ISPsy40
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012179 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae |
DNA section
IS Length : 2644 bp
Ends
IR Length : 24
IRL : TGGGGATTCCACGTGCACTTGGACACCCATTCCACGAATACTTGGACAGT
IRR : TGCGGATTCCACGACACTTGGACACTCAGCCCACGATCATTTGGACACTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGGGGATTCCACGTGCACTTGGACACCCATTCCACGAATACTTGGACAGTGATTCCACGCTGACTTGGACACTCATTCCACGGCAACTTGGACACTGATT
CCACGAGCATCTGGACAGTGATTTCTCACTGACCAGCCCCAAGCTCAGGCAGGCAGCAACGCAGGATTATTCACTACCATCGACCTCTTTTTTCGAAGCA
AAGGGGTCGTCGTGGAGCGTTTATCCATGCGTAAAGTCCGAGAGGTACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAAATCGCCGCCAGCCT
ACGCATCAGCAGCGGCAGTGCCGGCAATTACCTGCATCGGTTCAACGCCTGCGGTTTGAGTTGGCCTACGTCATTGTCCGATGCCGAGCTGGAGCGGCTT
TTATTCCCACCAGCTCCAACCGTGCCAAGCGATCAAAGGCCGATGCCTGACTGGGCGTGGGTACACGCTGAGTCGCGCCGTCCCGGCGTCACCCTGGCGC
TGCTCTGGCAGGAATATCGACTCGCCCACCCGCAAGGCTTTCAATACAGCTGGTTCTGCGAGCACTACCGCCTCTGGGCCGCCAAAGTCGATGTGGTCAT
GCGCCAGGAACACCGTGCCGGCGAAAAGCTGTTCGTCGATTACGCAGGACAGACCGCCCCAATCATCGACAGGAGCACTGGGGAGATCCGTCAGGCTCAG
ATCTTCGTCGCTGTCCTCGGCGCATCCAGTTACACCTTCGCCGAGGCCACCTGGTCGCAGAAACTGCCCGACTGGCTGGGCTCGCACGTCCGATGCTTTG
CTTTTTTCGGCGGCACAACGCAGATCCTGGTGCCCGATAATCTGCGCAGTGGCGTGACTAAAGCGCACCGTTACGAGCCGGATATCAACCCCAGCTACCG
CGATCTGGCTGAGCATTACGGCGTCGCCGTTTTGCCTGCTCGCTCGCGCAAGCCCAAGGACAAAGCCAAGGTCGAAGTCGGTGTTCAAGTGGTCGAGCGC
TGGATCCTCGCGGTGCTGCGCAACCGCCAGTTCTTCTCGCTCGGAGAACTCAACACAGCAATCAGCCTGCTACTCGAACGCCTCAATCACAAGCCCTTCA
AAAAGCTGCCCGGCTCGCGCCGGTCAGCCTTCGAAAGCATCGACCAACCTGCGCTGCAAGGGCTACCGGAGCATCCGTACGTCTACGCCGAATGGAAAAA
AGTGCGAGTCCATATCGACTATCACGTTGAGGTCGATGGCCACTTTTACTCGGTGCCGTACCAGTTGGTGAGGCACCAACTCGAAGTACGACTCACCGCC
CAGACCGTCGAGTGCTTCCACGCCAACCAGCGCGTGGCCAGCCACCTTCGCTCGCAGCACAAAGGCCGGCACACCACCCAAACCGAGCACATGCCCAAGA
GCCACCGCGAGCACGCCGAATGGACTCCACAGCGGTTGATCCGCTGGGCAGAACAGACCGGGCCTAACACCGCTGGCGTCATCGCCTACATCCTCGAGCG
CCGAATCCATCCGCAACACGGCTTCCGCGCCTGCCTGGGCATCCTGCGCCTGAGCAAACAGCACGGCGAAGCGCGGCTGGAAGCCGCGTGCCAGCGTGCG
CTGGCACTGGGCGCATGCAGTTACAAAAGCCTCGAATCGATCCTGCGCCAAGGGCTGGAAAAGCTACCGCTGTCCCAGCAAAACCTCCCGCTGCTGCCCG
ACGAGCACATCAACCTGCGCGGCCCTGGCTACTACCACTGACCTGAAAAAGGAGCTTCGAAATGCTACCGAATCCAACGCTCGACAAGCTGCAAACCCTG
CGCCTGCACGGCATGATCAAGGCGCTTGGCGAACAACACGCAACACCTGACATCAACGATCTCAGCTTCGACGAGCGCCTTGGCCTGATGGTCGACCGCG
AGCTGACCGAGCGCGAAGACGCCCGCATGACCACTCGCCTCAAAGCCGCGCGACTGCGCCACAACGCCTGCCTGGAAGACATCGACTACCGCAGCCCACG
CGGCCTGGACAAGGCCTTGATCCTGCAACTCGGCAGCGGCCAATGGCTGCGCGATGGCCTGAACCTGATCATCGGCGGGCCAACTGGTGTAGGCAAAACC
TGGCTCGCCTGCGCGCTGGCCCACAAGGCCTGCCGCGACGGCTACAGCGTCCGTTACCTGCGTCTACCGCGCTTGATGGAGGAGCTGGGCCTGGCCCACG
GCGACGGCCGCTTCGCCAAGCTGATGGCTGGCTACGCCAAGACTGACCTGCTGATCCTGGACGACTGGGGCCTGGCACCGTTTACCGCCGCCCAACGGCG
CGACATGCTTGAGCTGCTGGATGACCGCTACGGCAACCGCTCGACGCTGGTCACCAGCCAGATGCCGGTGGACAAATGGCATGCGCTGATCGGCGATCCG
ACCTTGGGCGACGCGATCCTCGACCGGCTGGTACATAACGCTTATCGGATCGAACTGAAGGGTGAATCGATGCGCAGGCGCGCAACAAAATTGACGTCGG
CAGGTGCTTCAGACTAACAATGCAAACCTGCGTCGCTGCGCTCCGACTGCCTGTCCAAGTGGACGTGGGGCAGGTGTCCAAGTGAGCTTGGAATGAGTGT
CCAAATGATCGTGGGCTGAGTGTCCAAGTGTCGTGGAATCCGCA
CCACGAGCATCTGGACAGTGATTTCTCACTGACCAGCCCCAAGCTCAGGCAGGCAGCAACGCAGGATTATTCACTACCATCGACCTCTTTTTTCGAAGCA
AAGGGGTCGTCGTGGAGCGTTTATCCATGCGTAAAGTCCGAGAGGTACTACGCCTAAAGTTCGACGCCGGCCTGTCCGTGCGCAAAATCGCCGCCAGCCT
ACGCATCAGCAGCGGCAGTGCCGGCAATTACCTGCATCGGTTCAACGCCTGCGGTTTGAGTTGGCCTACGTCATTGTCCGATGCCGAGCTGGAGCGGCTT
TTATTCCCACCAGCTCCAACCGTGCCAAGCGATCAAAGGCCGATGCCTGACTGGGCGTGGGTACACGCTGAGTCGCGCCGTCCCGGCGTCACCCTGGCGC
TGCTCTGGCAGGAATATCGACTCGCCCACCCGCAAGGCTTTCAATACAGCTGGTTCTGCGAGCACTACCGCCTCTGGGCCGCCAAAGTCGATGTGGTCAT
GCGCCAGGAACACCGTGCCGGCGAAAAGCTGTTCGTCGATTACGCAGGACAGACCGCCCCAATCATCGACAGGAGCACTGGGGAGATCCGTCAGGCTCAG
ATCTTCGTCGCTGTCCTCGGCGCATCCAGTTACACCTTCGCCGAGGCCACCTGGTCGCAGAAACTGCCCGACTGGCTGGGCTCGCACGTCCGATGCTTTG
CTTTTTTCGGCGGCACAACGCAGATCCTGGTGCCCGATAATCTGCGCAGTGGCGTGACTAAAGCGCACCGTTACGAGCCGGATATCAACCCCAGCTACCG
CGATCTGGCTGAGCATTACGGCGTCGCCGTTTTGCCTGCTCGCTCGCGCAAGCCCAAGGACAAAGCCAAGGTCGAAGTCGGTGTTCAAGTGGTCGAGCGC
TGGATCCTCGCGGTGCTGCGCAACCGCCAGTTCTTCTCGCTCGGAGAACTCAACACAGCAATCAGCCTGCTACTCGAACGCCTCAATCACAAGCCCTTCA
AAAAGCTGCCCGGCTCGCGCCGGTCAGCCTTCGAAAGCATCGACCAACCTGCGCTGCAAGGGCTACCGGAGCATCCGTACGTCTACGCCGAATGGAAAAA
AGTGCGAGTCCATATCGACTATCACGTTGAGGTCGATGGCCACTTTTACTCGGTGCCGTACCAGTTGGTGAGGCACCAACTCGAAGTACGACTCACCGCC
CAGACCGTCGAGTGCTTCCACGCCAACCAGCGCGTGGCCAGCCACCTTCGCTCGCAGCACAAAGGCCGGCACACCACCCAAACCGAGCACATGCCCAAGA
GCCACCGCGAGCACGCCGAATGGACTCCACAGCGGTTGATCCGCTGGGCAGAACAGACCGGGCCTAACACCGCTGGCGTCATCGCCTACATCCTCGAGCG
CCGAATCCATCCGCAACACGGCTTCCGCGCCTGCCTGGGCATCCTGCGCCTGAGCAAACAGCACGGCGAAGCGCGGCTGGAAGCCGCGTGCCAGCGTGCG
CTGGCACTGGGCGCATGCAGTTACAAAAGCCTCGAATCGATCCTGCGCCAAGGGCTGGAAAAGCTACCGCTGTCCCAGCAAAACCTCCCGCTGCTGCCCG
ACGAGCACATCAACCTGCGCGGCCCTGGCTACTACCACTGACCTGAAAAAGGAGCTTCGAAATGCTACCGAATCCAACGCTCGACAAGCTGCAAACCCTG
CGCCTGCACGGCATGATCAAGGCGCTTGGCGAACAACACGCAACACCTGACATCAACGATCTCAGCTTCGACGAGCGCCTTGGCCTGATGGTCGACCGCG
AGCTGACCGAGCGCGAAGACGCCCGCATGACCACTCGCCTCAAAGCCGCGCGACTGCGCCACAACGCCTGCCTGGAAGACATCGACTACCGCAGCCCACG
CGGCCTGGACAAGGCCTTGATCCTGCAACTCGGCAGCGGCCAATGGCTGCGCGATGGCCTGAACCTGATCATCGGCGGGCCAACTGGTGTAGGCAAAACC
TGGCTCGCCTGCGCGCTGGCCCACAAGGCCTGCCGCGACGGCTACAGCGTCCGTTACCTGCGTCTACCGCGCTTGATGGAGGAGCTGGGCCTGGCCCACG
GCGACGGCCGCTTCGCCAAGCTGATGGCTGGCTACGCCAAGACTGACCTGCTGATCCTGGACGACTGGGGCCTGGCACCGTTTACCGCCGCCCAACGGCG
CGACATGCTTGAGCTGCTGGATGACCGCTACGGCAACCGCTCGACGCTGGTCACCAGCCAGATGCCGGTGGACAAATGGCATGCGCTGATCGGCGATCCG
ACCTTGGGCGACGCGATCCTCGACCGGCTGGTACATAACGCTTATCGGATCGAACTGAAGGGTGAATCGATGCGCAGGCGCGCAACAAAATTGACGTCGG
CAGGTGCTTCAGACTAACAATGCAAACCTGCGTCGCTGCGCTCCGACTGCCTGTCCAAGTGGACGTGGGGCAGGTGTCCAAGTGAGCTTGGAATGAGTGT
CCAAATGATCGTGGGCTGAGTGTCCAAGTGTCGTGGAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1515 bp | 504 aa | 227 | 1741 | + | No |
Chemistry : DDE
ORF sequence :
MRKVREVLRLKFDAGLSVRKIAASLRISSGSAGNYLHRFNACGLSWPTSLSDAELERLLFPPAPTVPSDQRPMPDWAWVHAESRRPGVTLALLWQEYRLA
HPQGFQYSWFCEHYRLWAAKVDVVMRQEHRAGEKLFVDYAGQTAPIIDRSTGEIRQAQIFVAVLGASSYTFAEATWSQKLPDWLGSHVRCFAFFGGTTQI
LVPDNLRSGVTKAHRYEPDINPSYRDLAEHYGVAVLPARSRKPKDKAKVEVGVQVVERWILAVLRNRQFFSLGELNTAISLLLERLNHKPFKKLPGSRRS
AFESIDQPALQGLPEHPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVRHQLEVRLTAQTVECFHANQRVASHLRSQHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLEKLPLSQQNLPLLPDEHINLRGP
GYYH
HPQGFQYSWFCEHYRLWAAKVDVVMRQEHRAGEKLFVDYAGQTAPIIDRSTGEIRQAQIFVAVLGASSYTFAEATWSQKLPDWLGSHVRCFAFFGGTTQI
LVPDNLRSGVTKAHRYEPDINPSYRDLAEHYGVAVLPARSRKPKDKAKVEVGVQVVERWILAVLRNRQFFSLGELNTAISLLLERLNHKPFKKLPGSRRS
AFESIDQPALQGLPEHPYVYAEWKKVRVHIDYHVEVDGHFYSVPYQLVRHQLEVRLTAQTVECFHANQRVASHLRSQHKGRHTTQTEHMPKSHREHAEWT
PQRLIRWAEQTGPNTAGVIAYILERRIHPQHGFRACLGILRLSKQHGEARLEAACQRALALGACSYKSLESILRQGLEKLPLSQQNLPLLPDEHINLRGP
GYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1762 | 2517 | + | No |
AG : IS21 helper
ORF sequence :
MLPNPTLDKLQTLRLHGMIKALGEQHATPDINDLSFDERLGLMVDRELTEREDARMTTRLKAARLRHNACLEDIDYRSPRGLDKALILQLGSGQWLRDGL
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTSAGASD
NLIIGGPTGVGKTWLACALAHKACRDGYSVRYLRLPRLMEELGLAHGDGRFAKLMAGYAKTDLLILDDWGLAPFTAAQRRDMLELLDDRYGNRSTLVTSQ
MPVDKWHALIGDPTLGDAILDRLVHNAYRIELKGESMRRRATKLTSAGASD
Blast result :
Comments
ISPsy40 is 95% (ORFA : the transposase) and 99% (ORFB : the helper of transposition) aa similar to ISPsy14.
References
1] Butler M. (2017) Direct submission to ISfinder
2] Butler M.I., Stockwell P.A., Black M.A., Day R.C., Lamont I.L. and Poulter R.T. (2013) PLoS ONE 8 (2), E57464
2] Butler M.I., Stockwell P.A., Black M.A., Day R.C., Lamont I.L. and Poulter R.T. (2013) PLoS ONE 8 (2), E57464