ISDssp6
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR695870 | ND | Desulfobacterium sp. | Desulfobacterium sp. Uncultured Desulfobacterium sp. |
DNA section
IS Length : 1046 bp
Ends
IR Length : 29/33
IRL : AATGGCCTATTGACTTAGCTGACCCAATTATTTATAATAAACATCATGAG
IRR : AATTGCCTATTGACTTAGCTGACCCGCTTTTTTGACATCAGCTCATCCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAAAGATATATT TATACG | TATAAG AAAATTAATAAT | 0 |
DNA sequence
AATGGCCTATTGACTTAGCTGACCCAATTATTTATAATAAACATCATGAGCAGCAATATTGGGGTTAAGCCAAATTATGGGGAAGTGAGTTGGTTGATTT
TCCAGGAAGACTTTCAGAGTGAAGATGACTGTTATGCCTGGCTGCTCAAAACTCGCTGGCCAGAAGGATTTATTTGTCCTAAATGCGGGAGTAAGGATTA
TTGGTCAATTTCAGCTCAACAACAATTGTATAAATGTAAAAGTTGCCGCAATAGGGTTTCTCTGACCTCGGGGACTATTTTTCACAAAACGAGAACACCT
TTACTAAAATGGTTTATGTTAATTTTTAGAATGGCTACTTCTAAAACCGGAGTATCCATAAATGAAATGGCGAGAGAACTGGAGATCAATGACTATAAGA
CAGTTTGGACAATGGCCCATAAGATACGAAAAGCCATGGCAGATCGAGATAACCAATACAAGTTGGCAGGGTTAGTAGAAATGGATGAATCTTTTTTCGG
TCCAAGCTTTTCAGGCAAAAGAGGCCGGGGAGCAGAGAAAAAAGAATTGGTTATTGTTGCAGTTTCCATTTGGAGAGATAAAGCAGGAAAAGAGCGGCCT
GGTTTTGCTCATGCGTTTGTAGTAGAAAAGGCAGATGCAGAGACTATCGAGAACATTTTAAAACGCCTTGATGTTTCAGCGGAAGAAAGGAAGCCTTTAA
TAGATGTCATCCGTTCAGATGGCTGGAGGAGCTATCAAACTGTTACAAAAAAGTTGGGAATAGTTCACCATAGGGCTGTTCTTATTGATCCAAAAGATTC
TATGAAATTGCTGCCCTGGACTCATAAGATAATTGCCAATGCAAAATCAGTTTTTGCAGGCCCGCATAGAGGCGTATCGAAAAAGCATCTCCAGAGCTAT
CTTTCAGAGGTATGCTATCGTTTCAATCGTAGGTTTTGGAATAAGGAAGTGTTCCATCGCTTATTATTTGCTTGCGCTACAACGACCACTATAACGAGGG
ATGAGCTGATGTCAAAAAAGCGGGTCAGCTAAGTCAATAGGCAATT
TCCAGGAAGACTTTCAGAGTGAAGATGACTGTTATGCCTGGCTGCTCAAAACTCGCTGGCCAGAAGGATTTATTTGTCCTAAATGCGGGAGTAAGGATTA
TTGGTCAATTTCAGCTCAACAACAATTGTATAAATGTAAAAGTTGCCGCAATAGGGTTTCTCTGACCTCGGGGACTATTTTTCACAAAACGAGAACACCT
TTACTAAAATGGTTTATGTTAATTTTTAGAATGGCTACTTCTAAAACCGGAGTATCCATAAATGAAATGGCGAGAGAACTGGAGATCAATGACTATAAGA
CAGTTTGGACAATGGCCCATAAGATACGAAAAGCCATGGCAGATCGAGATAACCAATACAAGTTGGCAGGGTTAGTAGAAATGGATGAATCTTTTTTCGG
TCCAAGCTTTTCAGGCAAAAGAGGCCGGGGAGCAGAGAAAAAAGAATTGGTTATTGTTGCAGTTTCCATTTGGAGAGATAAAGCAGGAAAAGAGCGGCCT
GGTTTTGCTCATGCGTTTGTAGTAGAAAAGGCAGATGCAGAGACTATCGAGAACATTTTAAAACGCCTTGATGTTTCAGCGGAAGAAAGGAAGCCTTTAA
TAGATGTCATCCGTTCAGATGGCTGGAGGAGCTATCAAACTGTTACAAAAAAGTTGGGAATAGTTCACCATAGGGCTGTTCTTATTGATCCAAAAGATTC
TATGAAATTGCTGCCCTGGACTCATAAGATAATTGCCAATGCAAAATCAGTTTTTGCAGGCCCGCATAGAGGCGTATCGAAAAAGCATCTCCAGAGCTAT
CTTTCAGAGGTATGCTATCGTTTCAATCGTAGGTTTTGGAATAAGGAAGTGTTCCATCGCTTATTATTTGCTTGCGCTACAACGACCACTATAACGAGGG
ATGAGCTGATGTCAAAAAAGCGGGTCAGCTAAGTCAATAGGCAATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
975 bp | 324 aa | 58 | 1032 | + | No |
Chemistry : DDE
ORF sequence :
MGVKPNYGEVSWLIFQEDFQSEDDCYAWLLKTRWPEGFICPKCGSKDYWSISAQQQLYKCKSCRNRVSLTSGTIFHKTRTPLLKWFMLIFRMATSKTGVS
INEMARELEINDYKTVWTMAHKIRKAMADRDNQYKLAGLVEMDESFFGPSFSGKRGRGAEKKELVIVAVSIWRDKAGKERPGFAHAFVVEKADAETIENI
LKRLDVSAEERKPLIDVIRSDGWRSYQTVTKKLGIVHHRAVLIDPKDSMKLLPWTHKIIANAKSVFAGPHRGVSKKHLQSYLSEVCYRFNRRFWNKEVFH
RLLFACATTTTITRDELMSKKRVS
INEMARELEINDYKTVWTMAHKIRKAMADRDNQYKLAGLVEMDESFFGPSFSGKRGRGAEKKELVIVAVSIWRDKAGKERPGFAHAFVVEKADAETIENI
LKRLDVSAEERKPLIDVIRSDGWRSYQTVTKKLGIVHHRAVLIDPKDSMKLLPWTHKIIANAKSVFAGPHRGVSKKHLQSYLSEVCYRFNRRFWNKEVFH
RLLFACATTTTITRDELMSKKRVS
Blast result :
Comments
ISDssp6 is 60% aa similar to ISCalsp1.
References
1] ISfinder annotation (2017).
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.