ISDssp6

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR695870 ND Desulfobacterium sp.
Desulfobacterium sp.
Uncultured Desulfobacterium sp.
DNA section
IS Length : 1046 bp

Ends


IR Length : 29/33

IRL : AATGGCCTATTGACTTAGCTGACCCAATTATTTATAATAAACATCATGAG
IRR : AATTGCCTATTGACTTAGCTGACCCGCTTTTTTGACATCAGCTCATCCCT

Insertion site


Left flankDirect repeatRight flankDR Length
TAAAAGATATATT TATACGTATAAG AAAATTAATAAT0

DNA sequence

AATGGCCTATTGACTTAGCTGACCCAATTATTTATAATAAACATCATGAGCAGCAATATTGGGGTTAAGCCAAATTATGGGGAAGTGAGTTGGTTGATTT
TCCAGGAAGACTTTCAGAGTGAAGATGACTGTTATGCCTGGCTGCTCAAAACTCGCTGGCCAGAAGGATTTATTTGTCCTAAATGCGGGAGTAAGGATTA
TTGGTCAATTTCAGCTCAACAACAATTGTATAAATGTAAAAGTTGCCGCAATAGGGTTTCTCTGACCTCGGGGACTATTTTTCACAAAACGAGAACACCT
TTACTAAAATGGTTTATGTTAATTTTTAGAATGGCTACTTCTAAAACCGGAGTATCCATAAATGAAATGGCGAGAGAACTGGAGATCAATGACTATAAGA
CAGTTTGGACAATGGCCCATAAGATACGAAAAGCCATGGCAGATCGAGATAACCAATACAAGTTGGCAGGGTTAGTAGAAATGGATGAATCTTTTTTCGG
TCCAAGCTTTTCAGGCAAAAGAGGCCGGGGAGCAGAGAAAAAAGAATTGGTTATTGTTGCAGTTTCCATTTGGAGAGATAAAGCAGGAAAAGAGCGGCCT
GGTTTTGCTCATGCGTTTGTAGTAGAAAAGGCAGATGCAGAGACTATCGAGAACATTTTAAAACGCCTTGATGTTTCAGCGGAAGAAAGGAAGCCTTTAA
TAGATGTCATCCGTTCAGATGGCTGGAGGAGCTATCAAACTGTTACAAAAAAGTTGGGAATAGTTCACCATAGGGCTGTTCTTATTGATCCAAAAGATTC
TATGAAATTGCTGCCCTGGACTCATAAGATAATTGCCAATGCAAAATCAGTTTTTGCAGGCCCGCATAGAGGCGTATCGAAAAAGCATCTCCAGAGCTAT
CTTTCAGAGGTATGCTATCGTTTCAATCGTAGGTTTTGGAATAAGGAAGTGTTCCATCGCTTATTATTTGCTTGCGCTACAACGACCACTATAACGAGGG
ATGAGCTGATGTCAAAAAAGCGGGTCAGCTAAGTCAATAGGCAATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
975 bp324 aa581032+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGVKPNYGEVSWLIFQEDFQSEDDCYAWLLKTRWPEGFICPKCGSKDYWSISAQQQLYKCKSCRNRVSLTSGTIFHKTRTPLLKWFMLIFRMATSKTGVS
INEMARELEINDYKTVWTMAHKIRKAMADRDNQYKLAGLVEMDESFFGPSFSGKRGRGAEKKELVIVAVSIWRDKAGKERPGFAHAFVVEKADAETIENI
LKRLDVSAEERKPLIDVIRSDGWRSYQTVTKKLGIVHHRAVLIDPKDSMKLLPWTHKIIANAKSVFAGPHRGVSKKHLQSYLSEVCYRFNRRFWNKEVFH
RLLFACATTTTITRDELMSKKRVS

 

Blast result :
Comments
ISDssp6 is 60% aa similar to ISCalsp1.
References
1] ISfinder annotation (2017).
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.