ISDsba1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MAXO01000493 | ND | Desulfuromonadales bacterium | Desulfuromonadales bacterium C00003096 |
DNA section
IS Length : 1057 bp
Ends
IR Length : 27
IRL : AATGCTTATTTACTTAGCTCCTAATTTCCTGTAAGAACCTGACTAAAGGG
IRR : AATGCTTATTTACTTAGCTCCTAATTTTGCCTCTCGCTGTTTTGGGCCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATATCGGCTGGA | TACAAAGATTTCC | 0 |
DNA sequence
AATGCTTATTTACTTAGCTCCTAATTTCCTGTAAGAACCTGACTAAAGGGATCATTAATGTCAGGACGGTACAAAAAACGGAGTCTGCTGGACTTTCAAA
AAAGCTTCAATACAGAAGAGGCGTGTGCAAAACACTTGGCCGAACAAAGATGGGCATTGGGCTTTGCATGCCCTCGATGTGGGCACGATCAGTTCTGGTT
TTTGGCCAAGCGGCGGCTTTTCGATTGTAAGCAATGCCGCTACCAAACTAGTATTACAGCAGGAACGATTTTGCACAAAACCCGAATACCTCTTATCAAA
TGGTATTGGCTTCTGTACCACATGGCCATGGATAAGATAGGCGTCTCCGTTGCAGAAATGCAGCGAATACTGGAGATACAGAATTACAAAACAGCATGGT
TGATGGCCCATAAAGTGCGTAAGGCAATGTCCGATAGGGATGCCCGTTACAGCCTTGCCGGTTTGATAGAGATGGACGAATCCCTTTTCGGACCGAGGGG
TACAAAGCCAGGACGAGGGAGCGAAACGAAAAGCACTGTTTTGTGTGCGGTATCTCTTTATCGAAATCGAAAAGGCGTAGAAAAGCCAGGCTTTGCTCAC
ATGCGAGTCGTAGACAATGCCTCAGCAGAAAGCATTGAGGATTTTTTGGAAAGACTTGGGTGTGGAACGACAACAAAGGAAGGACAGCAACTTTTGGAAG
CTATTCGAAGCGATGGTTGGAGATCCTATGGAAAAGTGGCCAAAGCCAAGAATTTGTTGCACTACAAAGTTGTCCTTCGCGATCCTAAAGCTGCGGGGAA
GCTCCTGCCTTGGGTACATCGGGTTATCTCGAACGTCAAAAATGTAATTGGCGGAACTCATCGAGGTGTATCTGATAAGCATTTGGAGAGTTACCTTTCA
GAAATTTGCTACCGCTTTAACCGTCGATTCTGGGAGATGGAACTCTTTGACCGACTCGTACAGGCGTGCGTGACCACGGAAACCCTGACTTATACGGATC
TTATGCACAGGCCCAAAACAGCGAGAGGCAAAATTAGGAGCTAAGTAAATAAGCATT
AAAGCTTCAATACAGAAGAGGCGTGTGCAAAACACTTGGCCGAACAAAGATGGGCATTGGGCTTTGCATGCCCTCGATGTGGGCACGATCAGTTCTGGTT
TTTGGCCAAGCGGCGGCTTTTCGATTGTAAGCAATGCCGCTACCAAACTAGTATTACAGCAGGAACGATTTTGCACAAAACCCGAATACCTCTTATCAAA
TGGTATTGGCTTCTGTACCACATGGCCATGGATAAGATAGGCGTCTCCGTTGCAGAAATGCAGCGAATACTGGAGATACAGAATTACAAAACAGCATGGT
TGATGGCCCATAAAGTGCGTAAGGCAATGTCCGATAGGGATGCCCGTTACAGCCTTGCCGGTTTGATAGAGATGGACGAATCCCTTTTCGGACCGAGGGG
TACAAAGCCAGGACGAGGGAGCGAAACGAAAAGCACTGTTTTGTGTGCGGTATCTCTTTATCGAAATCGAAAAGGCGTAGAAAAGCCAGGCTTTGCTCAC
ATGCGAGTCGTAGACAATGCCTCAGCAGAAAGCATTGAGGATTTTTTGGAAAGACTTGGGTGTGGAACGACAACAAAGGAAGGACAGCAACTTTTGGAAG
CTATTCGAAGCGATGGTTGGAGATCCTATGGAAAAGTGGCCAAAGCCAAGAATTTGTTGCACTACAAAGTTGTCCTTCGCGATCCTAAAGCTGCGGGGAA
GCTCCTGCCTTGGGTACATCGGGTTATCTCGAACGTCAAAAATGTAATTGGCGGAACTCATCGAGGTGTATCTGATAAGCATTTGGAGAGTTACCTTTCA
GAAATTTGCTACCGCTTTAACCGTCGATTCTGGGAGATGGAACTCTTTGACCGACTCGTACAGGCGTGCGTGACCACGGAAACCCTGACTTATACGGATC
TTATGCACAGGCCCAAAACAGCGAGAGGCAAAATTAGGAGCTAAGTAAATAAGCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 58 | 1044 | + | No |
Chemistry : DDE
ORF sequence :
MSGRYKKRSLLDFQKSFNTEEACAKHLAEQRWALGFACPRCGHDQFWFLAKRRLFDCKQCRYQTSITAGTILHKTRIPLIKWYWLLYHMAMDKIGVSVAE
MQRILEIQNYKTAWLMAHKVRKAMSDRDARYSLAGLIEMDESLFGPRGTKPGRGSETKSTVLCAVSLYRNRKGVEKPGFAHMRVVDNASAESIEDFLERL
GCGTTTKEGQQLLEAIRSDGWRSYGKVAKAKNLLHYKVVLRDPKAAGKLLPWVHRVISNVKNVIGGTHRGVSDKHLESYLSEICYRFNRRFWEMELFDRL
VQACVTTETLTYTDLMHRPKTARGKIRS
MQRILEIQNYKTAWLMAHKVRKAMSDRDARYSLAGLIEMDESLFGPRGTKPGRGSETKSTVLCAVSLYRNRKGVEKPGFAHMRVVDNASAESIEDFLERL
GCGTTTKEGQQLLEAIRSDGWRSYGKVAKAKNLLHYKVVLRDPKAAGKLLPWVHRVISNVKNVIGGTHRGVSDKHLESYLSEICYRFNRRFWEMELFDRL
VQACVTTETLTYTDLMHRPKTARGKIRS
Blast result :
Comments
ISDsba1 is 63% aa similar to ISCalsp1.
References
1] ISfinder annotation (2017)
2] Skennerton,C.T. and Orphan,V.J. (2016) Direct GenBank submission.
2] Skennerton,C.T. and Orphan,V.J. (2016) Direct GenBank submission.