ISDsba1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MAXO01000493 ND Desulfuromonadales bacterium
Desulfuromonadales bacterium C00003096
DNA section
IS Length : 1057 bp

Ends


IR Length : 27

IRL : AATGCTTATTTACTTAGCTCCTAATTTCCTGTAAGAACCTGACTAAAGGG
IRR : AATGCTTATTTACTTAGCTCCTAATTTTGCCTCTCGCTGTTTTGGGCCTG

Insertion site


Left flankDirect repeatRight flankDR Length
AATATCGGCTGGATACAAAGATTTCC0

DNA sequence

AATGCTTATTTACTTAGCTCCTAATTTCCTGTAAGAACCTGACTAAAGGGATCATTAATGTCAGGACGGTACAAAAAACGGAGTCTGCTGGACTTTCAAA
AAAGCTTCAATACAGAAGAGGCGTGTGCAAAACACTTGGCCGAACAAAGATGGGCATTGGGCTTTGCATGCCCTCGATGTGGGCACGATCAGTTCTGGTT
TTTGGCCAAGCGGCGGCTTTTCGATTGTAAGCAATGCCGCTACCAAACTAGTATTACAGCAGGAACGATTTTGCACAAAACCCGAATACCTCTTATCAAA
TGGTATTGGCTTCTGTACCACATGGCCATGGATAAGATAGGCGTCTCCGTTGCAGAAATGCAGCGAATACTGGAGATACAGAATTACAAAACAGCATGGT
TGATGGCCCATAAAGTGCGTAAGGCAATGTCCGATAGGGATGCCCGTTACAGCCTTGCCGGTTTGATAGAGATGGACGAATCCCTTTTCGGACCGAGGGG
TACAAAGCCAGGACGAGGGAGCGAAACGAAAAGCACTGTTTTGTGTGCGGTATCTCTTTATCGAAATCGAAAAGGCGTAGAAAAGCCAGGCTTTGCTCAC
ATGCGAGTCGTAGACAATGCCTCAGCAGAAAGCATTGAGGATTTTTTGGAAAGACTTGGGTGTGGAACGACAACAAAGGAAGGACAGCAACTTTTGGAAG
CTATTCGAAGCGATGGTTGGAGATCCTATGGAAAAGTGGCCAAAGCCAAGAATTTGTTGCACTACAAAGTTGTCCTTCGCGATCCTAAAGCTGCGGGGAA
GCTCCTGCCTTGGGTACATCGGGTTATCTCGAACGTCAAAAATGTAATTGGCGGAACTCATCGAGGTGTATCTGATAAGCATTTGGAGAGTTACCTTTCA
GAAATTTGCTACCGCTTTAACCGTCGATTCTGGGAGATGGAACTCTTTGACCGACTCGTACAGGCGTGCGTGACCACGGAAACCCTGACTTATACGGATC
TTATGCACAGGCCCAAAACAGCGAGAGGCAAAATTAGGAGCTAAGTAAATAAGCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
987 bp328 aa581044+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSGRYKKRSLLDFQKSFNTEEACAKHLAEQRWALGFACPRCGHDQFWFLAKRRLFDCKQCRYQTSITAGTILHKTRIPLIKWYWLLYHMAMDKIGVSVAE
MQRILEIQNYKTAWLMAHKVRKAMSDRDARYSLAGLIEMDESLFGPRGTKPGRGSETKSTVLCAVSLYRNRKGVEKPGFAHMRVVDNASAESIEDFLERL
GCGTTTKEGQQLLEAIRSDGWRSYGKVAKAKNLLHYKVVLRDPKAAGKLLPWVHRVISNVKNVIGGTHRGVSDKHLESYLSEICYRFNRRFWEMELFDRL
VQACVTTETLTYTDLMHRPKTARGKIRS

 

Blast result :
Comments
ISDsba1 is 63% aa similar to ISCalsp1.
References
1] ISfinder annotation (2017)
2] Skennerton,C.T. and Orphan,V.J. (2016) Direct GenBank submission.