ISNtsp5
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002552 | ND | Nitrosomonas sp. | Nitrosomonas sp. AL212 |
DNA section
IS Length : 970 bp
Ends
IR Length : 25/31
IRL : TATGCCTATGAACCATTTTCAGCTTAATTTGCCCTAAGCTGCAAGATCAA
IRR : TATGCCTCTATACCATTTTCAGTTTCACTTGAGTATGAGTCAGACACGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTGAGTAGGAAA | TAGTATTA | TATATAGTATTTAA | 8 |
TAGCTTGTACTCA | TAATTTTA | TGTAATGTTGCGGT | 8 |
TAATAACGATATT | TATTAATA | TGACAGAATCACGC | 8 |
GATACCGGAATCA | ATCTAGTT | TGATCCAGATCAAT | 8 |
CGCAGTTGATTCA | TTCATTAA | TGTCAATTGGACGT | 8 |
ACGCACATCGTCA | CTAAAATA | TATGGTTTGGGTAA | 8 |
CTAATCCTATTTA | AAGTATTT | TTCTATCAATATTC | 8 |
GATAAAAATGTCA | TTATTTAA | TGTGTTTGGTATAG | 8 |
TTTACATTGATTA | TTCTATTT | TTATTATTTGTATA | 8 |
ACATGGTGTATTA | AAAAATTA | TCAGAAAAGACGAT | 8 |
GATTGATGAGATA | AAAATATA | TGAATGGAGGAATT | 8 |
ACATATATACTAA | TAACCATA | TAAATTCTTATTTT | 8 |
GTGCTGACAGACA | TATATATA | TGGCTTTCTCCATT | 8 |
TTTTACAGAATCA | AACTGTTT | TGAAAGAGGATATT | 8 |
AGAGATAGAAATA | TAAAAATAAGAAAT | 0 | |
TACATTGCTTTCA | TTCCCGTT | TGACTTCATGTGTT | 8 |
TATTGTCAGATCA | AATCTGAA | TTACTACAAATAAT | 8 |
DNA sequence
TATGCCTATGAACCATTTTCAGCTTAATTTGCCCTAAGCTGCAAGATCAACAGGATAAGAGAGTAAGTGATGAAAGGCAAGGAACTGAATTTGTTGGACT
GGCAAAAGCATTACGGGACGGAGGAAGCCTGCGCTCAAGCATTATTTCAGCAACGCTGGCCGGAAGGATTTCGCTGCCCGTACTGCGGGCATGATCATGG
TTATGCGATAACAACCCGTCACAATTGGGAATGCAGTCGCTGCCACAAGCAAACATCGCTAACAGCAGGAACGTTGTTTCATTCAACCAATCTGCCGTTG
GTTAAGTGGTTTTGGGCAATTTACCTGTTATCTTCAGATAAAGGTGGTATTTCTGCGTTACGATTATCGAAGCAGATCAATGTATCGTGGATTACGGCCA
GCCGGATGTTGCGCAAGATTCGAATCGCCATGGGACACCGGGATAGCATCTATCGGTTAGAAGAATTGATTGAAATTGATGATGCGTTGATAGGAGGGCG
ACAAACTGGGGAAAAGCGTGGACGGGGCGCCGAAAGAAAAACGCCGATACTGGTGGCAGTTGAGAATCGAGGCAAGCGTGCCGGGTTTATTGCCATGCAG
CAAGTTTCAGGCATTAACCGGGAAGCGGTATCGCAATTTGTGAAACGGCATCTTTTACCTGATCAAGGGGTGCGCAGTGATGCGTTGCCCTCGCTGGCTG
AGATCGGAAAAACCCAGAACCATGACGCCCGAGTGACGCCACCCCATAAAGCTGGAGAATGGTTACCCTGGGTACATGTTGCCATTGGTAACCTTAAAGC
ATTCTTGCTTGGAACATACCACGGCGTAACGTCAAAATACTTGCAAGAGTATCTGAACGAATTTTGTTACCGTTTTAACCGAAGAGCATGGGAAGCTCAA
TTACCATCCAGACTTCTCAATGCGTGTCTGACTCATACTCAAGTGAAACTGAAAATGGTATAGAGGCATA
GGCAAAAGCATTACGGGACGGAGGAAGCCTGCGCTCAAGCATTATTTCAGCAACGCTGGCCGGAAGGATTTCGCTGCCCGTACTGCGGGCATGATCATGG
TTATGCGATAACAACCCGTCACAATTGGGAATGCAGTCGCTGCCACAAGCAAACATCGCTAACAGCAGGAACGTTGTTTCATTCAACCAATCTGCCGTTG
GTTAAGTGGTTTTGGGCAATTTACCTGTTATCTTCAGATAAAGGTGGTATTTCTGCGTTACGATTATCGAAGCAGATCAATGTATCGTGGATTACGGCCA
GCCGGATGTTGCGCAAGATTCGAATCGCCATGGGACACCGGGATAGCATCTATCGGTTAGAAGAATTGATTGAAATTGATGATGCGTTGATAGGAGGGCG
ACAAACTGGGGAAAAGCGTGGACGGGGCGCCGAAAGAAAAACGCCGATACTGGTGGCAGTTGAGAATCGAGGCAAGCGTGCCGGGTTTATTGCCATGCAG
CAAGTTTCAGGCATTAACCGGGAAGCGGTATCGCAATTTGTGAAACGGCATCTTTTACCTGATCAAGGGGTGCGCAGTGATGCGTTGCCCTCGCTGGCTG
AGATCGGAAAAACCCAGAACCATGACGCCCGAGTGACGCCACCCCATAAAGCTGGAGAATGGTTACCCTGGGTACATGTTGCCATTGGTAACCTTAAAGC
ATTCTTGCTTGGAACATACCACGGCGTAACGTCAAAATACTTGCAAGAGTATCTGAACGAATTTTGTTACCGTTTTAACCGAAGAGCATGGGAAGCTCAA
TTACCATCCAGACTTCTCAATGCGTGTCTGACTCATACTCAAGTGAAACTGAAAATGGTATAGAGGCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 70 | 963 | + | No |
Chemistry : DDE
ORF sequence :
MKGKELNLLDWQKHYGTEEACAQALFQQRWPEGFRCPYCGHDHGYAITTRHNWECSRCHKQTSLTAGTLFHSTNLPLVKWFWAIYLLSSDKGGISALRLS
KQINVSWITASRMLRKIRIAMGHRDSIYRLEELIEIDDALIGGRQTGEKRGRGAERKTPILVAVENRGKRAGFIAMQQVSGINREAVSQFVKRHLLPDQG
VRSDALPSLAEIGKTQNHDARVTPPHKAGEWLPWVHVAIGNLKAFLLGTYHGVTSKYLQEYLNEFCYRFNRRAWEAQLPSRLLNACLTHTQVKLKMV
KQINVSWITASRMLRKIRIAMGHRDSIYRLEELIEIDDALIGGRQTGEKRGRGAERKTPILVAVENRGKRAGFIAMQQVSGINREAVSQFVKRHLLPDQG
VRSDALPSLAEIGKTQNHDARVTPPHKAGEWLPWVHVAIGNLKAFLLGTYHGVTSKYLQEYLNEFCYRFNRRAWEAQLPSRLLNACLTHTQVKLKMV
Blast result :
Comments
ISNtsp5 is 75% aa similar to ISPpr5.
References
1] ISfinder annotation (2017).
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Suwa,Y., Klotz,M.G., Bollmann,A., Stein,L.Y., Laanbroek,H.J., Arp,D.J., Norton,J.M. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Suwa,Y., Klotz,M.G., Bollmann,A., Stein,L.Y., Laanbroek,H.J., Arp,D.J., Norton,J.M. and Woyke,T. (2011) Direct GenBank submission.