ISNtsp5

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002552 ND Nitrosomonas sp.
Nitrosomonas sp. AL212
DNA section
IS Length : 970 bp

Ends


IR Length : 25/31

IRL : TATGCCTATGAACCATTTTCAGCTTAATTTGCCCTAAGCTGCAAGATCAA
IRR : TATGCCTCTATACCATTTTCAGTTTCACTTGAGTATGAGTCAGACACGCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTGAGTAGGAAATAGTATTATATATAGTATTTAA8
TAGCTTGTACTCATAATTTTATGTAATGTTGCGGT8
TAATAACGATATTTATTAATATGACAGAATCACGC8
GATACCGGAATCAATCTAGTTTGATCCAGATCAAT8
CGCAGTTGATTCATTCATTAATGTCAATTGGACGT8
ACGCACATCGTCACTAAAATATATGGTTTGGGTAA8
CTAATCCTATTTAAAGTATTTTTCTATCAATATTC8
GATAAAAATGTCATTATTTAATGTGTTTGGTATAG8
TTTACATTGATTATTCTATTTTTATTATTTGTATA8
ACATGGTGTATTAAAAAATTATCAGAAAAGACGAT8
GATTGATGAGATAAAAATATATGAATGGAGGAATT8
ACATATATACTAATAACCATATAAATTCTTATTTT8
GTGCTGACAGACATATATATATGGCTTTCTCCATT8
TTTTACAGAATCAAACTGTTTTGAAAGAGGATATT8
AGAGATAGAAATATAAAAATAAGAAAT0
TACATTGCTTTCATTCCCGTTTGACTTCATGTGTT8
TATTGTCAGATCAAATCTGAATTACTACAAATAAT8

DNA sequence

TATGCCTATGAACCATTTTCAGCTTAATTTGCCCTAAGCTGCAAGATCAACAGGATAAGAGAGTAAGTGATGAAAGGCAAGGAACTGAATTTGTTGGACT
GGCAAAAGCATTACGGGACGGAGGAAGCCTGCGCTCAAGCATTATTTCAGCAACGCTGGCCGGAAGGATTTCGCTGCCCGTACTGCGGGCATGATCATGG
TTATGCGATAACAACCCGTCACAATTGGGAATGCAGTCGCTGCCACAAGCAAACATCGCTAACAGCAGGAACGTTGTTTCATTCAACCAATCTGCCGTTG
GTTAAGTGGTTTTGGGCAATTTACCTGTTATCTTCAGATAAAGGTGGTATTTCTGCGTTACGATTATCGAAGCAGATCAATGTATCGTGGATTACGGCCA
GCCGGATGTTGCGCAAGATTCGAATCGCCATGGGACACCGGGATAGCATCTATCGGTTAGAAGAATTGATTGAAATTGATGATGCGTTGATAGGAGGGCG
ACAAACTGGGGAAAAGCGTGGACGGGGCGCCGAAAGAAAAACGCCGATACTGGTGGCAGTTGAGAATCGAGGCAAGCGTGCCGGGTTTATTGCCATGCAG
CAAGTTTCAGGCATTAACCGGGAAGCGGTATCGCAATTTGTGAAACGGCATCTTTTACCTGATCAAGGGGTGCGCAGTGATGCGTTGCCCTCGCTGGCTG
AGATCGGAAAAACCCAGAACCATGACGCCCGAGTGACGCCACCCCATAAAGCTGGAGAATGGTTACCCTGGGTACATGTTGCCATTGGTAACCTTAAAGC
ATTCTTGCTTGGAACATACCACGGCGTAACGTCAAAATACTTGCAAGAGTATCTGAACGAATTTTGTTACCGTTTTAACCGAAGAGCATGGGAAGCTCAA
TTACCATCCAGACTTCTCAATGCGTGTCTGACTCATACTCAAGTGAAACTGAAAATGGTATAGAGGCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa70963+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKGKELNLLDWQKHYGTEEACAQALFQQRWPEGFRCPYCGHDHGYAITTRHNWECSRCHKQTSLTAGTLFHSTNLPLVKWFWAIYLLSSDKGGISALRLS
KQINVSWITASRMLRKIRIAMGHRDSIYRLEELIEIDDALIGGRQTGEKRGRGAERKTPILVAVENRGKRAGFIAMQQVSGINREAVSQFVKRHLLPDQG
VRSDALPSLAEIGKTQNHDARVTPPHKAGEWLPWVHVAIGNLKAFLLGTYHGVTSKYLQEYLNEFCYRFNRRAWEAQLPSRLLNACLTHTQVKLKMV

 

Blast result :
Comments
ISNtsp5 is 75% aa similar to ISPpr5.
References
1] ISfinder annotation (2017).
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Chertkov,O., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Suwa,Y., Klotz,M.G., Bollmann,A., Stein,L.Y., Laanbroek,H.J., Arp,D.J., Norton,J.M. and Woyke,T. (2011) Direct GenBank submission.