ISClba3
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LAKY01000054 | ND | Clostridiales bacterium | Clostridiales bacterium PH28_bin88 |
DNA section
IS Length : 998 bp
Ends
IR Length : 20/26
IRL : GATGACTATCAAGTTGTATCAGGAAATCCTTCCCTCAACCGAACGTATGT
IRR : GATGACTATAAAGTTAGATCCGCATAAGTGACAATTGGGCCATTCATGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTAGAGTTGCA | TAAACCAA | AATTCACTTTGT | 8 |
DNA sequence
GATGACTATCAAGTTGTATCAGGAAATCCTTCCCTCAACCGAACGTATGTGCTATAATCGACTTAGAACATACGTTCGAGGAGGATGAGCCCCGTGGCCC
AAAGAGAACCTATCAGCTTTATGGAGTTCCAACAGCGTTTCGTTAATGAAGAAGCCTGTTACCAGTACCTGTTCGACATGCGGTGGCCAGAGGGCTTCTG
TTGCCCGCGTTGTGGCCACAAAGGGTATTATTTTGTCTCGAAGCGCCGCATCTACCAATGCAAGTCGTGTAGTTATCAGGCTTCTCTCACTGCTGGAACT
GTTTTTCACAAGACTCATACCGCACTGCAAAAATGGTTTTGGGCCATATTTCTGGTGGCAACTGATAAGAGAGGATACTCGGCCCTCGCCTTGATGAAAA
TCATTGATGTTAGTTATCCCACTGCCTGGCTTATGCTGCAAAAGATTAGGGCTGCCATGTCTGAGCGCGATCAGATGTATCAGTTATCCGGCCTTATCCA
GTTGGACGAAGCTTTTTTCGGCGGTCCAGATGGCAAGCAAGGCCGGGGAACAGATAAGATGGCTGCATACGTGGCGGTTTCAACCACCGACGAGGGGAAA
CCCCTATACGCCAAAATAGAAGTAACTGAGCGCGTCAATAAGGAAACAGCTCTTGACTTCGTCACTCGTACTGTATCGCCGGGAAGTACTATTACCACCG
ACGGACTAAATGTATACCCCCAGCTAAAGGCCACAAGTTATGTGCACGACCGGGTTTTATCCTCTGAAGCAGAAGCTGATGAAAAACTGCGTTGGGTGCA
TACTCTGGTGTCCAACGCCAAGGCCTTTATAGCCGGTACGTATCATGGGCGTGACAAGAAACACTTACAGGCCTATCTGGATGAGTTTTGTTACCGTTTT
AACCGCCGGGCATGGCAACCGCAGCTCTTTGGTCGTCTTTTGTCCGCATGCATGAATGGCCCAATTGTCACTTATGCGGATCTAACTTTATAGTCATC
AAAGAGAACCTATCAGCTTTATGGAGTTCCAACAGCGTTTCGTTAATGAAGAAGCCTGTTACCAGTACCTGTTCGACATGCGGTGGCCAGAGGGCTTCTG
TTGCCCGCGTTGTGGCCACAAAGGGTATTATTTTGTCTCGAAGCGCCGCATCTACCAATGCAAGTCGTGTAGTTATCAGGCTTCTCTCACTGCTGGAACT
GTTTTTCACAAGACTCATACCGCACTGCAAAAATGGTTTTGGGCCATATTTCTGGTGGCAACTGATAAGAGAGGATACTCGGCCCTCGCCTTGATGAAAA
TCATTGATGTTAGTTATCCCACTGCCTGGCTTATGCTGCAAAAGATTAGGGCTGCCATGTCTGAGCGCGATCAGATGTATCAGTTATCCGGCCTTATCCA
GTTGGACGAAGCTTTTTTCGGCGGTCCAGATGGCAAGCAAGGCCGGGGAACAGATAAGATGGCTGCATACGTGGCGGTTTCAACCACCGACGAGGGGAAA
CCCCTATACGCCAAAATAGAAGTAACTGAGCGCGTCAATAAGGAAACAGCTCTTGACTTCGTCACTCGTACTGTATCGCCGGGAAGTACTATTACCACCG
ACGGACTAAATGTATACCCCCAGCTAAAGGCCACAAGTTATGTGCACGACCGGGTTTTATCCTCTGAAGCAGAAGCTGATGAAAAACTGCGTTGGGTGCA
TACTCTGGTGTCCAACGCCAAGGCCTTTATAGCCGGTACGTATCATGGGCGTGACAAGAAACACTTACAGGCCTATCTGGATGAGTTTTGTTACCGTTTT
AACCGCCGGGCATGGCAACCGCAGCTCTTTGGTCGTCTTTTGTCCGCATGCATGAATGGCCCAATTGTCACTTATGCGGATCTAACTTTATAGTCATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
900 bp | 299 aa | 94 | 993 | + | No |
Chemistry : DDE
ORF sequence :
MAQREPISFMEFQQRFVNEEACYQYLFDMRWPEGFCCPRCGHKGYYFVSKRRIYQCKSCSYQASLTAGTVFHKTHTALQKWFWAIFLVATDKRGYSALAL
MKIIDVSYPTAWLMLQKIRAAMSERDQMYQLSGLIQLDEAFFGGPDGKQGRGTDKMAAYVAVSTTDEGKPLYAKIEVTERVNKETALDFVTRTVSPGSTI
TTDGLNVYPQLKATSYVHDRVLSSEAEADEKLRWVHTLVSNAKAFIAGTYHGRDKKHLQAYLDEFCYRFNRRAWQPQLFGRLLSACMNGPIVTYADLTL
MKIIDVSYPTAWLMLQKIRAAMSERDQMYQLSGLIQLDEAFFGGPDGKQGRGTDKMAAYVAVSTTDEGKPLYAKIEVTERVNKETALDFVTRTVSPGSTI
TTDGLNVYPQLKATSYVHDRVLSSEAEADEKLRWVHTLVSNAKAFIAGTYHGRDKKHLQAYLDEFCYRFNRRAWQPQLFGRLLSACMNGPIVTYADLTL
Blast result :
Comments
ISClba3 is 67% aa similar to ISPlba3.
References
1] ISfinder annotation (2017).
2] Robbins,S. and Tyson,G. (2015) Direct GenBank submission.
2] Robbins,S. and Tyson,G. (2015) Direct GenBank submission.