ISClba3

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LAKY01000054 ND Clostridiales bacterium
Clostridiales bacterium PH28_bin88
DNA section
IS Length : 998 bp

Ends


IR Length : 20/26

IRL : GATGACTATCAAGTTGTATCAGGAAATCCTTCCCTCAACCGAACGTATGT
IRR : GATGACTATAAAGTTAGATCCGCATAAGTGACAATTGGGCCATTCATGCA

Insertion site


Left flankDirect repeatRight flankDR Length
AGTAGAGTTGCATAAACCAAAATTCACTTTGT8

DNA sequence

GATGACTATCAAGTTGTATCAGGAAATCCTTCCCTCAACCGAACGTATGTGCTATAATCGACTTAGAACATACGTTCGAGGAGGATGAGCCCCGTGGCCC
AAAGAGAACCTATCAGCTTTATGGAGTTCCAACAGCGTTTCGTTAATGAAGAAGCCTGTTACCAGTACCTGTTCGACATGCGGTGGCCAGAGGGCTTCTG
TTGCCCGCGTTGTGGCCACAAAGGGTATTATTTTGTCTCGAAGCGCCGCATCTACCAATGCAAGTCGTGTAGTTATCAGGCTTCTCTCACTGCTGGAACT
GTTTTTCACAAGACTCATACCGCACTGCAAAAATGGTTTTGGGCCATATTTCTGGTGGCAACTGATAAGAGAGGATACTCGGCCCTCGCCTTGATGAAAA
TCATTGATGTTAGTTATCCCACTGCCTGGCTTATGCTGCAAAAGATTAGGGCTGCCATGTCTGAGCGCGATCAGATGTATCAGTTATCCGGCCTTATCCA
GTTGGACGAAGCTTTTTTCGGCGGTCCAGATGGCAAGCAAGGCCGGGGAACAGATAAGATGGCTGCATACGTGGCGGTTTCAACCACCGACGAGGGGAAA
CCCCTATACGCCAAAATAGAAGTAACTGAGCGCGTCAATAAGGAAACAGCTCTTGACTTCGTCACTCGTACTGTATCGCCGGGAAGTACTATTACCACCG
ACGGACTAAATGTATACCCCCAGCTAAAGGCCACAAGTTATGTGCACGACCGGGTTTTATCCTCTGAAGCAGAAGCTGATGAAAAACTGCGTTGGGTGCA
TACTCTGGTGTCCAACGCCAAGGCCTTTATAGCCGGTACGTATCATGGGCGTGACAAGAAACACTTACAGGCCTATCTGGATGAGTTTTGTTACCGTTTT
AACCGCCGGGCATGGCAACCGCAGCTCTTTGGTCGTCTTTTGTCCGCATGCATGAATGGCCCAATTGTCACTTATGCGGATCTAACTTTATAGTCATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
900 bp299 aa94993+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQREPISFMEFQQRFVNEEACYQYLFDMRWPEGFCCPRCGHKGYYFVSKRRIYQCKSCSYQASLTAGTVFHKTHTALQKWFWAIFLVATDKRGYSALAL
MKIIDVSYPTAWLMLQKIRAAMSERDQMYQLSGLIQLDEAFFGGPDGKQGRGTDKMAAYVAVSTTDEGKPLYAKIEVTERVNKETALDFVTRTVSPGSTI
TTDGLNVYPQLKATSYVHDRVLSSEAEADEKLRWVHTLVSNAKAFIAGTYHGRDKKHLQAYLDEFCYRFNRRAWQPQLFGRLLSACMNGPIVTYADLTL

 

Blast result :
Comments
ISClba3 is 67% aa similar to ISPlba3.
References
1] ISfinder annotation (2017).
2] Robbins,S. and Tyson,G. (2015) Direct GenBank submission.