ISPaen6
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JFOM01000026 | ND | Paenibacillus sp. | Paenibacillus sp. LC231 |
DNA section
IS Length : 1018 bp
Ends
IR Length : 25/30
IRL : TTGAATATCAAGTTGCCTCAGCAACACGTACACGCACGAACATTTGTTTG
IRR : TTGAATATCAAGTTAGCTCCGCTAGACCTAAGCAGTCAGATCGCCGTAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTTGAGCCAGA | ATTCTAAAAT | AAATATGGAA | 10 |
DNA sequence
TTGAATATCAAGTTGCCTCAGCAACACGTACACGCACGAACATTTGTTTGATATAATAAGTACAAACGAATGTTCGGGAGTGAATGGTATGGCACAACAA
GAATTAATGACGTTGAAGAGGTTTCAAGAAAAGTTTCATTCGGAAGATGCATGCCGCGAGCATCTGTTCCAGATCCGATGGACAAACGGGTTCTTCTGCC
CGAAGTGCCAGCACAATGCGTTCTACTTTCTTGAAACTCGAAAGCTGTATCAATGCACGAACTGCAAGCATCAGGCTTCTGTTACCGCCGGCACGATAAT
GCATAAATCTCATACTCCTCTGCTGACCTGGTTTTGGGCGATTTTCCTTGTGGCGCATGATAAACGCGGTGTATCCGCCGTATTTCTTGCACGCGAACTG
GAAATCTCTTACCCGACTGCGTGGTTAATGCTCCACAAGATCCGTAAAGCCATGGGAGATCGCGATGCTCAGTACCAGTTGGCTGGTTTGGTTGAGCTGG
ATGACGCATTCTTCGGAGCTCCAACAGAAGGAGGCAAACGTGGTCGTGGCACGGACCAAACACCTGTGCTCGTTGGGGTATCGCTTAACAAACAAGGAGC
ACCGCAATACGTCAAAATGCAGGTAATTCCGGATGTCAAAGGCAAGACGCTCGTCGAATTTGCGAAGCAGCACATTGAACCGGGTTCGACGATCAGTAGC
GACGCCTATCGTTCGTACAATGCACTCGCAGAAGAATATAACCACCAACCGATTAAGTTCAATGTAAAGGATAATCCGGATCATCTGAAATGGCTTCACA
CGATGATTTCAAATGCGAAAGCCTTTATTGGCGGTACGTTCCACGGATTAGATTCCAAGCATCTGCAATCCTATTTGAACGAATTTTGCTTTCGCACCAA
TCGACGGCAGTTTGAAGGTCAGTTGTTTAATCGCCTGCTTGCCGCCTGTTTATCCACGGATACCGTTACCTACGGCGATCTGACTGCTTAGGTCTAGCGG
AGCTAACTTGATATTCAA
GAATTAATGACGTTGAAGAGGTTTCAAGAAAAGTTTCATTCGGAAGATGCATGCCGCGAGCATCTGTTCCAGATCCGATGGACAAACGGGTTCTTCTGCC
CGAAGTGCCAGCACAATGCGTTCTACTTTCTTGAAACTCGAAAGCTGTATCAATGCACGAACTGCAAGCATCAGGCTTCTGTTACCGCCGGCACGATAAT
GCATAAATCTCATACTCCTCTGCTGACCTGGTTTTGGGCGATTTTCCTTGTGGCGCATGATAAACGCGGTGTATCCGCCGTATTTCTTGCACGCGAACTG
GAAATCTCTTACCCGACTGCGTGGTTAATGCTCCACAAGATCCGTAAAGCCATGGGAGATCGCGATGCTCAGTACCAGTTGGCTGGTTTGGTTGAGCTGG
ATGACGCATTCTTCGGAGCTCCAACAGAAGGAGGCAAACGTGGTCGTGGCACGGACCAAACACCTGTGCTCGTTGGGGTATCGCTTAACAAACAAGGAGC
ACCGCAATACGTCAAAATGCAGGTAATTCCGGATGTCAAAGGCAAGACGCTCGTCGAATTTGCGAAGCAGCACATTGAACCGGGTTCGACGATCAGTAGC
GACGCCTATCGTTCGTACAATGCACTCGCAGAAGAATATAACCACCAACCGATTAAGTTCAATGTAAAGGATAATCCGGATCATCTGAAATGGCTTCACA
CGATGATTTCAAATGCGAAAGCCTTTATTGGCGGTACGTTCCACGGATTAGATTCCAAGCATCTGCAATCCTATTTGAACGAATTTTGCTTTCGCACCAA
TCGACGGCAGTTTGAAGGTCAGTTGTTTAATCGCCTGCTTGCCGCCTGTTTATCCACGGATACCGTTACCTACGGCGATCTGACTGCTTAGGTCTAGCGG
AGCTAACTTGATATTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 89 | 991 | + | No |
Chemistry : DDE
ORF sequence :
MAQQELMTLKRFQEKFHSEDACREHLFQIRWTNGFFCPKCQHNAFYFLETRKLYQCTNCKHQASVTAGTIMHKSHTPLLTWFWAIFLVAHDKRGVSAVFL
ARELEISYPTAWLMLHKIRKAMGDRDAQYQLAGLVELDDAFFGAPTEGGKRGRGTDQTPVLVGVSLNKQGAPQYVKMQVIPDVKGKTLVEFAKQHIEPGS
TISSDAYRSYNALAEEYNHQPIKFNVKDNPDHLKWLHTMISNAKAFIGGTFHGLDSKHLQSYLNEFCFRTNRRQFEGQLFNRLLAACLSTDTVTYGDLTA
ARELEISYPTAWLMLHKIRKAMGDRDAQYQLAGLVELDDAFFGAPTEGGKRGRGTDQTPVLVGVSLNKQGAPQYVKMQVIPDVKGKTLVEFAKQHIEPGS
TISSDAYRSYNALAEEYNHQPIKFNVKDNPDHLKWLHTMISNAKAFIGGTFHGLDSKHLQSYLNEFCFRTNRRQFEGQLFNRLLAACLSTDTVTYGDLTA
Blast result :
Comments
ISPaen6 is 70% aa similar to ISPlba3.
There is an empty site in Paenibacillus stellifer strain DSM 14472 (CP009286.1).
There is an empty site in Paenibacillus stellifer strain DSM 14472 (CP009286.1).
References
1] ISfinder annotation (2017).
2] Pawlowski,A.C., Wang,W., Koteva,K., Barton,H.A., McArthur,A.G. and Wright,G.D. (2016) Nat Commun 7, 13803.
2] Pawlowski,A.C., Wang,W., Koteva,K., Barton,H.A., McArthur,A.G. and Wright,G.D. (2016) Nat Commun 7, 13803.