ISPaen6

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JFOM01000026 ND Paenibacillus sp.
Paenibacillus sp. LC231
DNA section
IS Length : 1018 bp

Ends


IR Length : 25/30

IRL : TTGAATATCAAGTTGCCTCAGCAACACGTACACGCACGAACATTTGTTTG
IRR : TTGAATATCAAGTTAGCTCCGCTAGACCTAAGCAGTCAGATCGCCGTAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGTTGAGCCAGAATTCTAAAATAAATATGGAA10

DNA sequence

TTGAATATCAAGTTGCCTCAGCAACACGTACACGCACGAACATTTGTTTGATATAATAAGTACAAACGAATGTTCGGGAGTGAATGGTATGGCACAACAA
GAATTAATGACGTTGAAGAGGTTTCAAGAAAAGTTTCATTCGGAAGATGCATGCCGCGAGCATCTGTTCCAGATCCGATGGACAAACGGGTTCTTCTGCC
CGAAGTGCCAGCACAATGCGTTCTACTTTCTTGAAACTCGAAAGCTGTATCAATGCACGAACTGCAAGCATCAGGCTTCTGTTACCGCCGGCACGATAAT
GCATAAATCTCATACTCCTCTGCTGACCTGGTTTTGGGCGATTTTCCTTGTGGCGCATGATAAACGCGGTGTATCCGCCGTATTTCTTGCACGCGAACTG
GAAATCTCTTACCCGACTGCGTGGTTAATGCTCCACAAGATCCGTAAAGCCATGGGAGATCGCGATGCTCAGTACCAGTTGGCTGGTTTGGTTGAGCTGG
ATGACGCATTCTTCGGAGCTCCAACAGAAGGAGGCAAACGTGGTCGTGGCACGGACCAAACACCTGTGCTCGTTGGGGTATCGCTTAACAAACAAGGAGC
ACCGCAATACGTCAAAATGCAGGTAATTCCGGATGTCAAAGGCAAGACGCTCGTCGAATTTGCGAAGCAGCACATTGAACCGGGTTCGACGATCAGTAGC
GACGCCTATCGTTCGTACAATGCACTCGCAGAAGAATATAACCACCAACCGATTAAGTTCAATGTAAAGGATAATCCGGATCATCTGAAATGGCTTCACA
CGATGATTTCAAATGCGAAAGCCTTTATTGGCGGTACGTTCCACGGATTAGATTCCAAGCATCTGCAATCCTATTTGAACGAATTTTGCTTTCGCACCAA
TCGACGGCAGTTTGAAGGTCAGTTGTTTAATCGCCTGCTTGCCGCCTGTTTATCCACGGATACCGTTACCTACGGCGATCTGACTGCTTAGGTCTAGCGG
AGCTAACTTGATATTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
903 bp300 aa89991+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQQELMTLKRFQEKFHSEDACREHLFQIRWTNGFFCPKCQHNAFYFLETRKLYQCTNCKHQASVTAGTIMHKSHTPLLTWFWAIFLVAHDKRGVSAVFL
ARELEISYPTAWLMLHKIRKAMGDRDAQYQLAGLVELDDAFFGAPTEGGKRGRGTDQTPVLVGVSLNKQGAPQYVKMQVIPDVKGKTLVEFAKQHIEPGS
TISSDAYRSYNALAEEYNHQPIKFNVKDNPDHLKWLHTMISNAKAFIGGTFHGLDSKHLQSYLNEFCFRTNRRQFEGQLFNRLLAACLSTDTVTYGDLTA

 

Blast result :
Comments
ISPaen6 is 70% aa similar to ISPlba3.
There is an empty site in Paenibacillus stellifer strain DSM 14472 (CP009286.1).
References
1] ISfinder annotation (2017).
2] Pawlowski,A.C., Wang,W., Koteva,K., Barton,H.A., McArthur,A.G. and Wright,G.D. (2016) Nat Commun 7, 13803.