ISCalsp1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MESS01000119 ND Caldithrix sp.
Caldithrix sp. RBG_13_44_9
DNA section
IS Length : 1023 bp

Ends


IR Length : 20

IRL : ATGATTATTGCCTTAGCTCCTAAAAAAATAAGGCTAAATAGTTGTTGTTA
IRR : ATGATTATTGCCTTAGCTCCGAAAAAGTTATGGTTTGAGTTAACACACAA

Insertion site


Left flankDirect repeatRight flankDR Length
ACTCTTTTAAAATAAGATATAAAGAGCCTG10

DNA sequence

ATGATTATTGCCTTAGCTCCTAAAAAAATAAGGCTAAATAGTTGTTGTTAATAGTAATAAGGCACTTTATATTTGGTGTAATCATGTTCACTATATTTTA
AGGTGCTATTATGTATAAATCCATTGATTTTTTTAGGTTTCAAGAGATGTTTTCCAGTGATCATAAATGTTGGAATTACCTGGTCAAACGACGTTGGCCA
GTCGAATTTCAGTGCCCACACTGCGGTCATAACCGATACTATTTTCACCCCCAGCGGGCCCTCTTTGAGTGTAAAGCCTGTCGGTATCAGAGTTCGGTAA
CGGCCAATACGATTTTTCATAAAACGCGCACACCTCTGAAGAAATGGTTCTGGGCGATTTATCTGATGGTCCATCAAAAAAACGGTATCTCGACCTTGCA
ATTGCAGAAGTATTTGGGGATTAAAACATACAAAACCGTTTGGGTGATGGTGCATAAGATCCGCCAGGCGATGGCTGCCCGGGATTCGACCTACCAGCTC
TGTGGCTTGATTGAACTGGATGAGAGCTATTTTGGGGGAAAGGGGCATACCGGCAAGCGAGGCCGAGGCTCGGAGAACAAATCGCCAGTCCTGGTGGCGG
TGGAAGTTCCGGATAATAAACGACCTAAATTTGCCTGGTTTGGCCAAGTACCCAACCTGGAATCCGAGCAGATTGAGAAGGCTCTCAAGAAAAAGATTAA
AGATCTTTCCATTCTGAAAACCGATGCCTATAAGAGTTTCCTTTTTATCCCTCAGAAAGGTTATTATCATTATCCAAAGGTCATGAGTGATAATCAAAAG
ATTGCGGATCACCTGCCCTGGGTTCATATTCTGATCGGGAATGTTAAAAATGCGATCCGAGCGACTTTTCATGGTGTCAGTGCTAAACATTTGTCAAGAT
ACCTGGGTGAATATTCTTATCGGTTTAATCGACGATTCTTTGAACCACAATTATTTGATCGGCTCTTGAATGCTTGTGTGTTAACTCAAACCATAACTTT
TTCGGAGCTAAGGCAATAATCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
909 bp302 aa1111019+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYKSIDFFRFQEMFSSDHKCWNYLVKRRWPVEFQCPHCGHNRYYFHPQRALFECKACRYQSSVTANTIFHKTRTPLKKWFWAIYLMVHQKNGISTLQLQK
YLGIKTYKTVWVMVHKIRQAMAARDSTYQLCGLIELDESYFGGKGHTGKRGRGSENKSPVLVAVEVPDNKRPKFAWFGQVPNLESEQIEKALKKKIKDLS
ILKTDAYKSFLFIPQKGYYHYPKVMSDNQKIADHLPWVHILIGNVKNAIRATFHGVSAKHLSRYLGEYSYRFNRRFFEPQLFDRLLNACVLTQTITFSEL
RQ

 

Blast result :
Comments
ISCalsp1 is 63% aa similar to ISCku1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.