ISCalsp1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MESS01000119 | ND | Caldithrix sp. | Caldithrix sp. RBG_13_44_9 |
DNA section
IS Length : 1023 bp
Ends
IR Length : 20
IRL : ATGATTATTGCCTTAGCTCCTAAAAAAATAAGGCTAAATAGTTGTTGTTA
IRR : ATGATTATTGCCTTAGCTCCGAAAAAGTTATGGTTTGAGTTAACACACAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCTTTTAA | AATAAGATAT | AAAGAGCCTG | 10 |
DNA sequence
ATGATTATTGCCTTAGCTCCTAAAAAAATAAGGCTAAATAGTTGTTGTTAATAGTAATAAGGCACTTTATATTTGGTGTAATCATGTTCACTATATTTTA
AGGTGCTATTATGTATAAATCCATTGATTTTTTTAGGTTTCAAGAGATGTTTTCCAGTGATCATAAATGTTGGAATTACCTGGTCAAACGACGTTGGCCA
GTCGAATTTCAGTGCCCACACTGCGGTCATAACCGATACTATTTTCACCCCCAGCGGGCCCTCTTTGAGTGTAAAGCCTGTCGGTATCAGAGTTCGGTAA
CGGCCAATACGATTTTTCATAAAACGCGCACACCTCTGAAGAAATGGTTCTGGGCGATTTATCTGATGGTCCATCAAAAAAACGGTATCTCGACCTTGCA
ATTGCAGAAGTATTTGGGGATTAAAACATACAAAACCGTTTGGGTGATGGTGCATAAGATCCGCCAGGCGATGGCTGCCCGGGATTCGACCTACCAGCTC
TGTGGCTTGATTGAACTGGATGAGAGCTATTTTGGGGGAAAGGGGCATACCGGCAAGCGAGGCCGAGGCTCGGAGAACAAATCGCCAGTCCTGGTGGCGG
TGGAAGTTCCGGATAATAAACGACCTAAATTTGCCTGGTTTGGCCAAGTACCCAACCTGGAATCCGAGCAGATTGAGAAGGCTCTCAAGAAAAAGATTAA
AGATCTTTCCATTCTGAAAACCGATGCCTATAAGAGTTTCCTTTTTATCCCTCAGAAAGGTTATTATCATTATCCAAAGGTCATGAGTGATAATCAAAAG
ATTGCGGATCACCTGCCCTGGGTTCATATTCTGATCGGGAATGTTAAAAATGCGATCCGAGCGACTTTTCATGGTGTCAGTGCTAAACATTTGTCAAGAT
ACCTGGGTGAATATTCTTATCGGTTTAATCGACGATTCTTTGAACCACAATTATTTGATCGGCTCTTGAATGCTTGTGTGTTAACTCAAACCATAACTTT
TTCGGAGCTAAGGCAATAATCAT
AGGTGCTATTATGTATAAATCCATTGATTTTTTTAGGTTTCAAGAGATGTTTTCCAGTGATCATAAATGTTGGAATTACCTGGTCAAACGACGTTGGCCA
GTCGAATTTCAGTGCCCACACTGCGGTCATAACCGATACTATTTTCACCCCCAGCGGGCCCTCTTTGAGTGTAAAGCCTGTCGGTATCAGAGTTCGGTAA
CGGCCAATACGATTTTTCATAAAACGCGCACACCTCTGAAGAAATGGTTCTGGGCGATTTATCTGATGGTCCATCAAAAAAACGGTATCTCGACCTTGCA
ATTGCAGAAGTATTTGGGGATTAAAACATACAAAACCGTTTGGGTGATGGTGCATAAGATCCGCCAGGCGATGGCTGCCCGGGATTCGACCTACCAGCTC
TGTGGCTTGATTGAACTGGATGAGAGCTATTTTGGGGGAAAGGGGCATACCGGCAAGCGAGGCCGAGGCTCGGAGAACAAATCGCCAGTCCTGGTGGCGG
TGGAAGTTCCGGATAATAAACGACCTAAATTTGCCTGGTTTGGCCAAGTACCCAACCTGGAATCCGAGCAGATTGAGAAGGCTCTCAAGAAAAAGATTAA
AGATCTTTCCATTCTGAAAACCGATGCCTATAAGAGTTTCCTTTTTATCCCTCAGAAAGGTTATTATCATTATCCAAAGGTCATGAGTGATAATCAAAAG
ATTGCGGATCACCTGCCCTGGGTTCATATTCTGATCGGGAATGTTAAAAATGCGATCCGAGCGACTTTTCATGGTGTCAGTGCTAAACATTTGTCAAGAT
ACCTGGGTGAATATTCTTATCGGTTTAATCGACGATTCTTTGAACCACAATTATTTGATCGGCTCTTGAATGCTTGTGTGTTAACTCAAACCATAACTTT
TTCGGAGCTAAGGCAATAATCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 111 | 1019 | + | No |
Chemistry : DDE
ORF sequence :
MYKSIDFFRFQEMFSSDHKCWNYLVKRRWPVEFQCPHCGHNRYYFHPQRALFECKACRYQSSVTANTIFHKTRTPLKKWFWAIYLMVHQKNGISTLQLQK
YLGIKTYKTVWVMVHKIRQAMAARDSTYQLCGLIELDESYFGGKGHTGKRGRGSENKSPVLVAVEVPDNKRPKFAWFGQVPNLESEQIEKALKKKIKDLS
ILKTDAYKSFLFIPQKGYYHYPKVMSDNQKIADHLPWVHILIGNVKNAIRATFHGVSAKHLSRYLGEYSYRFNRRFFEPQLFDRLLNACVLTQTITFSEL
RQ
YLGIKTYKTVWVMVHKIRQAMAARDSTYQLCGLIELDESYFGGKGHTGKRGRGSENKSPVLVAVEVPDNKRPKFAWFGQVPNLESEQIEKALKKKIKDLS
ILKTDAYKSFLFIPQKGYYHYPKVMSDNQKIADHLPWVHILIGNVKNAIRATFHGVSAKHLSRYLGEYSYRFNRRFFEPQLFDRLLNACVLTQTITFSEL
RQ
Blast result :
Comments
ISCalsp1 is 63% aa similar to ISCku1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.