ISPlba3

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MHXS01000066 ND Planctomycetes bacterium
Planctomycetes bacterium GWB2_41_19
DNA section
IS Length : 957 bp

Ends


IR Length : 27

IRL : GATGGCTATTGAGTTAACTCACCAAAGTCTATAGAATATCGTCATGGCAC
IRR : GATGGCTATTGAGTTAACTCACCAAAGGTAATGGTTTCACAATTCATACA

Insertion site


Left flankDirect repeatRight flankDR Length
TAACTTCTCATAAAGTAATGCCGCCTGT8

DNA sequence

GATGGCTATTGAGTTAACTCACCAAAGTCTATAGAATATCGTCATGGCACAACAAAGCCCATTGACGCTTTTCGATTTTCATAAACAGTTTCGAGATGAA
GAGGACTGCAAGGAATATCTTTTCAAGATACGATGGCCTAATGGATATTGCTGTCCTCGGTGCCAGGGAGATCAATATTTCATGATAAAGGGTAGAGAGC
TTTTTAAATGCAAGAGATGTTATTACCAGACATCTCTGACCGCTGGCACGGTTCTTCACCGAACCAGAACTCCATTGCTTGTGTGGTTTTGGGCTATTTT
TCTTATTTCTTGTGATAAGCGAGGGCATTCCACCCTTTCGCTCTCGAAGGAACTTGGAGTGAGTTACTGGGTCTCTTGGACTTTGCTCCAAAAGATTCGC
TCCGCTATGGGCAAACAAGATGGTCAATACAAACTCCGTGGTGTTGTTGAAGTAGACGAAGCCTATCTTGGGTACAAGACGGAGAAGCAAAACAACAAAC
GAGGCAGGGGAACAGAAAAGGCCAAGGTTTTGGTTGCTGTTTCCACGGACGAGAAGAAAAAACATCCGCGATTCGCAAAGATGAAAGCCGTGAATCGTCT
TACCACAGAAGTTGTTATCGATTTTGTCAAATCTCATTTTGAGGAAAACTGTTTGGTTCAAACAGATGGTTTGAACATATATAATGCGTTGAAGGATAAT
GTAACCAAACACGAAATATTTCCAATCGTGTCCGGAGAAGCACCACTGCCTTGGGTTCATACAATTATTTCCAACGCCAAGGCGTTTGTTCTTGGAACTT
ATCATGGTATCGGGCCAAAACATTTGCAGGTATACCTCGATGAATTCTGTTATCGCTTCAACCGCCGCTTTTGGGAAAACCAATTATTTAATAGAATGCT
AGCGGCATGTATGAATTGTGAAACCATTACCTTTGGTGAGTTAACTCAATAGCCATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
909 bp302 aa44952+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQQSPLTLFDFHKQFRDEEDCKEYLFKIRWPNGYCCPRCQGDQYFMIKGRELFKCKRCYYQTSLTAGTVLHRTRTPLLVWFWAIFLISCDKRGHSTLSL
SKELGVSYWVSWTLLQKIRSAMGKQDGQYKLRGVVEVDEAYLGYKTEKQNNKRGRGTEKAKVLVAVSTDEKKKHPRFAKMKAVNRLTTEVVIDFVKSHFE
ENCLVQTDGLNIYNALKDNVTKHEIFPIVSGEAPLPWVHTIISNAKAFVLGTYHGIGPKHLQVYLDEFCYRFNRRFWENQLFNRMLAACMNCETITFGEL
TQ

 

Blast result :
Comments
ISPlba3 is 69% aa similar to ISCku1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.