ISPlba3
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MHXS01000066 | ND | Planctomycetes bacterium | Planctomycetes bacterium GWB2_41_19 |
DNA section
IS Length : 957 bp
Ends
IR Length : 27
IRL : GATGGCTATTGAGTTAACTCACCAAAGTCTATAGAATATCGTCATGGCAC
IRR : GATGGCTATTGAGTTAACTCACCAAAGGTAATGGTTTCACAATTCATACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAACTTCTCA | TAAAGTAA | TGCCGCCTGT | 8 |
DNA sequence
GATGGCTATTGAGTTAACTCACCAAAGTCTATAGAATATCGTCATGGCACAACAAAGCCCATTGACGCTTTTCGATTTTCATAAACAGTTTCGAGATGAA
GAGGACTGCAAGGAATATCTTTTCAAGATACGATGGCCTAATGGATATTGCTGTCCTCGGTGCCAGGGAGATCAATATTTCATGATAAAGGGTAGAGAGC
TTTTTAAATGCAAGAGATGTTATTACCAGACATCTCTGACCGCTGGCACGGTTCTTCACCGAACCAGAACTCCATTGCTTGTGTGGTTTTGGGCTATTTT
TCTTATTTCTTGTGATAAGCGAGGGCATTCCACCCTTTCGCTCTCGAAGGAACTTGGAGTGAGTTACTGGGTCTCTTGGACTTTGCTCCAAAAGATTCGC
TCCGCTATGGGCAAACAAGATGGTCAATACAAACTCCGTGGTGTTGTTGAAGTAGACGAAGCCTATCTTGGGTACAAGACGGAGAAGCAAAACAACAAAC
GAGGCAGGGGAACAGAAAAGGCCAAGGTTTTGGTTGCTGTTTCCACGGACGAGAAGAAAAAACATCCGCGATTCGCAAAGATGAAAGCCGTGAATCGTCT
TACCACAGAAGTTGTTATCGATTTTGTCAAATCTCATTTTGAGGAAAACTGTTTGGTTCAAACAGATGGTTTGAACATATATAATGCGTTGAAGGATAAT
GTAACCAAACACGAAATATTTCCAATCGTGTCCGGAGAAGCACCACTGCCTTGGGTTCATACAATTATTTCCAACGCCAAGGCGTTTGTTCTTGGAACTT
ATCATGGTATCGGGCCAAAACATTTGCAGGTATACCTCGATGAATTCTGTTATCGCTTCAACCGCCGCTTTTGGGAAAACCAATTATTTAATAGAATGCT
AGCGGCATGTATGAATTGTGAAACCATTACCTTTGGTGAGTTAACTCAATAGCCATC
GAGGACTGCAAGGAATATCTTTTCAAGATACGATGGCCTAATGGATATTGCTGTCCTCGGTGCCAGGGAGATCAATATTTCATGATAAAGGGTAGAGAGC
TTTTTAAATGCAAGAGATGTTATTACCAGACATCTCTGACCGCTGGCACGGTTCTTCACCGAACCAGAACTCCATTGCTTGTGTGGTTTTGGGCTATTTT
TCTTATTTCTTGTGATAAGCGAGGGCATTCCACCCTTTCGCTCTCGAAGGAACTTGGAGTGAGTTACTGGGTCTCTTGGACTTTGCTCCAAAAGATTCGC
TCCGCTATGGGCAAACAAGATGGTCAATACAAACTCCGTGGTGTTGTTGAAGTAGACGAAGCCTATCTTGGGTACAAGACGGAGAAGCAAAACAACAAAC
GAGGCAGGGGAACAGAAAAGGCCAAGGTTTTGGTTGCTGTTTCCACGGACGAGAAGAAAAAACATCCGCGATTCGCAAAGATGAAAGCCGTGAATCGTCT
TACCACAGAAGTTGTTATCGATTTTGTCAAATCTCATTTTGAGGAAAACTGTTTGGTTCAAACAGATGGTTTGAACATATATAATGCGTTGAAGGATAAT
GTAACCAAACACGAAATATTTCCAATCGTGTCCGGAGAAGCACCACTGCCTTGGGTTCATACAATTATTTCCAACGCCAAGGCGTTTGTTCTTGGAACTT
ATCATGGTATCGGGCCAAAACATTTGCAGGTATACCTCGATGAATTCTGTTATCGCTTCAACCGCCGCTTTTGGGAAAACCAATTATTTAATAGAATGCT
AGCGGCATGTATGAATTGTGAAACCATTACCTTTGGTGAGTTAACTCAATAGCCATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 44 | 952 | + | No |
Chemistry : DDE
ORF sequence :
MAQQSPLTLFDFHKQFRDEEDCKEYLFKIRWPNGYCCPRCQGDQYFMIKGRELFKCKRCYYQTSLTAGTVLHRTRTPLLVWFWAIFLISCDKRGHSTLSL
SKELGVSYWVSWTLLQKIRSAMGKQDGQYKLRGVVEVDEAYLGYKTEKQNNKRGRGTEKAKVLVAVSTDEKKKHPRFAKMKAVNRLTTEVVIDFVKSHFE
ENCLVQTDGLNIYNALKDNVTKHEIFPIVSGEAPLPWVHTIISNAKAFVLGTYHGIGPKHLQVYLDEFCYRFNRRFWENQLFNRMLAACMNCETITFGEL
TQ
SKELGVSYWVSWTLLQKIRSAMGKQDGQYKLRGVVEVDEAYLGYKTEKQNNKRGRGTEKAKVLVAVSTDEKKKHPRFAKMKAVNRLTTEVVIDFVKSHFE
ENCLVQTDGLNIYNALKDNVTKHEIFPIVSGEAPLPWVHTIISNAKAFVLGTYHGIGPKHLQVYLDEFCYRFNRRFWENQLFNRMLAACMNCETITFGEL
TQ
Blast result :
Comments
ISPlba3 is 69% aa similar to ISCku1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.