ISPvsp2

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ALJQ01000002 ND Prevotella sp.
Prevotella sp. MSX73
DNA section
IS Length : 1076 bp

Ends


IR Length : 23/25

IRL : AAAGAATATCCGCAATCATCCAAATTTAACAGAGTTTGCACTGCCATTAT
IRR : AATGAATATCCCCAATCATCCAAATCAGTAAATTCAATGTTTGAAACTCG

Insertion site


Left flankDirect repeatRight flankDR Length
TAAAAGAATAAAGAAAACTTTTATAT0

DNA sequence

AAAGAATATCCGCAATCATCCAAATTTAACAGAGTTTGCACTGCCATTATTGTACTTGGCGCAGACTTTGTAGCTGTATTATTGATTATCAGAAAGGAGT
TACTATGAATCTGACTGATTTCTACAAGACTTATCCGGACGAGGAAGCCTGTGAGCGTGCTCTCAGGGAATATCGCGAATGCAACACCCTTTATTGCCCG
GAATGTGGCGGTCTGCACCTCAGTTGGAATCCAAGTCACAGGTCTTGGACATGTACGGATTGCGATCATGAGACGACTCTTCGTTCAGCTACCGTGATGC
AGGGCAAACTTCCGGTTTTCGACTGGTTCGTGGCAATGTTTCTGATTGCAGGCACCAAGCGGGCCATTTCCGCTTTGGAGGTACAGCGCCGGCTTGGAAG
GAAGCGGTATCAACCCGTCTGGGAAATGATGCATAAACTGCGTGACGTGATGGGAAAGCGGGACGGTCTCTACCGGCTGTTTGACCAGGTGGAACTCGAC
GAGGGCTTCTTCACCACGGAGACGCCTGACAGTGAAAAAGGGCATCCTCTCAAACGCGGGCACGGAAGCCAGCGGAAGACGGCCGTGCTTGTCATGGCGG
AGAGTTCTGTCCCCGCAGATATGCCAGCCAAGAAGTACAGTACGTGTAAAAAGGTCGGTCACATCAAGATGATGGTCATACCTGACTTGAAAGCTGCAAC
GGAGGAAGATTGGATAAAGAGGTCAGTGGATGCGAAGGCGGAGGCAACGACTGATGCCGCCGATTCTTATTCAACACTCGTCAGGAATGGTGCGGTTGCC
GGACATGAAACTTATGTCATGAAGGACAAGGCCATGGTCGGCAGAGTACTCCCGTGGGTACACATATCCATCAGCAATGCCAAACGTAGCATTCTTGACA
CGTATCACGATATCAAAGCAGACTTCCTGCAGCTCTATCTCAATGAGTTCTGCTATAAGTTCAACCGGAGATATTTCAGCTTCTACCTTTTTGAAAAGCT
TGAACTCTGCGCATGTACTAATAGAACGAGTTTCAAACATTGAATTTACTGATTTGGATGATTGGGGATATTCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa1051043+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLTDFYKTYPDEEACERALREYRECNTLYCPECGGLHLSWNPSHRSWTCTDCDHETTLRSATVMQGKLPVFDWFVAMFLIAGTKRAISALEVQRRLGRK
RYQPVWEMMHKLRDVMGKRDGLYRLFDQVELDEGFFTTETPDSEKGHPLKRGHGSQRKTAVLVMAESSVPADMPAKKYSTCKKVGHIKMMVIPDLKAATE
EDWIKRSVDAKAEATTDAADSYSTLVRNGAVAGHETYVMKDKAMVGRVLPWVHISISNAKRSILDTYHDIKADFLQLYLNEFCYKFNRRYFSFYLFEKLE
LCACTNRTSFKH

 

Blast result :
Comments
ISPvsp2 is 66% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017)
2] Durkin,A.S., McCorrison,J., Torralba,M., Gillis,M., Methe,B., Sutton,G. and Nelson,K.E. (2012) Direct GenBank submission.