ISPvsp2
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ALJQ01000002 | ND | Prevotella sp. | Prevotella sp. MSX73 |
DNA section
IS Length : 1076 bp
Ends
IR Length : 23/25
IRL : AAAGAATATCCGCAATCATCCAAATTTAACAGAGTTTGCACTGCCATTAT
IRR : AATGAATATCCCCAATCATCCAAATCAGTAAATTCAATGTTTGAAACTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAAAGAATAAAGAA | AACTTTTATAT | 0 |
DNA sequence
AAAGAATATCCGCAATCATCCAAATTTAACAGAGTTTGCACTGCCATTATTGTACTTGGCGCAGACTTTGTAGCTGTATTATTGATTATCAGAAAGGAGT
TACTATGAATCTGACTGATTTCTACAAGACTTATCCGGACGAGGAAGCCTGTGAGCGTGCTCTCAGGGAATATCGCGAATGCAACACCCTTTATTGCCCG
GAATGTGGCGGTCTGCACCTCAGTTGGAATCCAAGTCACAGGTCTTGGACATGTACGGATTGCGATCATGAGACGACTCTTCGTTCAGCTACCGTGATGC
AGGGCAAACTTCCGGTTTTCGACTGGTTCGTGGCAATGTTTCTGATTGCAGGCACCAAGCGGGCCATTTCCGCTTTGGAGGTACAGCGCCGGCTTGGAAG
GAAGCGGTATCAACCCGTCTGGGAAATGATGCATAAACTGCGTGACGTGATGGGAAAGCGGGACGGTCTCTACCGGCTGTTTGACCAGGTGGAACTCGAC
GAGGGCTTCTTCACCACGGAGACGCCTGACAGTGAAAAAGGGCATCCTCTCAAACGCGGGCACGGAAGCCAGCGGAAGACGGCCGTGCTTGTCATGGCGG
AGAGTTCTGTCCCCGCAGATATGCCAGCCAAGAAGTACAGTACGTGTAAAAAGGTCGGTCACATCAAGATGATGGTCATACCTGACTTGAAAGCTGCAAC
GGAGGAAGATTGGATAAAGAGGTCAGTGGATGCGAAGGCGGAGGCAACGACTGATGCCGCCGATTCTTATTCAACACTCGTCAGGAATGGTGCGGTTGCC
GGACATGAAACTTATGTCATGAAGGACAAGGCCATGGTCGGCAGAGTACTCCCGTGGGTACACATATCCATCAGCAATGCCAAACGTAGCATTCTTGACA
CGTATCACGATATCAAAGCAGACTTCCTGCAGCTCTATCTCAATGAGTTCTGCTATAAGTTCAACCGGAGATATTTCAGCTTCTACCTTTTTGAAAAGCT
TGAACTCTGCGCATGTACTAATAGAACGAGTTTCAAACATTGAATTTACTGATTTGGATGATTGGGGATATTCATT
TACTATGAATCTGACTGATTTCTACAAGACTTATCCGGACGAGGAAGCCTGTGAGCGTGCTCTCAGGGAATATCGCGAATGCAACACCCTTTATTGCCCG
GAATGTGGCGGTCTGCACCTCAGTTGGAATCCAAGTCACAGGTCTTGGACATGTACGGATTGCGATCATGAGACGACTCTTCGTTCAGCTACCGTGATGC
AGGGCAAACTTCCGGTTTTCGACTGGTTCGTGGCAATGTTTCTGATTGCAGGCACCAAGCGGGCCATTTCCGCTTTGGAGGTACAGCGCCGGCTTGGAAG
GAAGCGGTATCAACCCGTCTGGGAAATGATGCATAAACTGCGTGACGTGATGGGAAAGCGGGACGGTCTCTACCGGCTGTTTGACCAGGTGGAACTCGAC
GAGGGCTTCTTCACCACGGAGACGCCTGACAGTGAAAAAGGGCATCCTCTCAAACGCGGGCACGGAAGCCAGCGGAAGACGGCCGTGCTTGTCATGGCGG
AGAGTTCTGTCCCCGCAGATATGCCAGCCAAGAAGTACAGTACGTGTAAAAAGGTCGGTCACATCAAGATGATGGTCATACCTGACTTGAAAGCTGCAAC
GGAGGAAGATTGGATAAAGAGGTCAGTGGATGCGAAGGCGGAGGCAACGACTGATGCCGCCGATTCTTATTCAACACTCGTCAGGAATGGTGCGGTTGCC
GGACATGAAACTTATGTCATGAAGGACAAGGCCATGGTCGGCAGAGTACTCCCGTGGGTACACATATCCATCAGCAATGCCAAACGTAGCATTCTTGACA
CGTATCACGATATCAAAGCAGACTTCCTGCAGCTCTATCTCAATGAGTTCTGCTATAAGTTCAACCGGAGATATTTCAGCTTCTACCTTTTTGAAAAGCT
TGAACTCTGCGCATGTACTAATAGAACGAGTTTCAAACATTGAATTTACTGATTTGGATGATTGGGGATATTCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 105 | 1043 | + | No |
Chemistry : DDE
ORF sequence :
MNLTDFYKTYPDEEACERALREYRECNTLYCPECGGLHLSWNPSHRSWTCTDCDHETTLRSATVMQGKLPVFDWFVAMFLIAGTKRAISALEVQRRLGRK
RYQPVWEMMHKLRDVMGKRDGLYRLFDQVELDEGFFTTETPDSEKGHPLKRGHGSQRKTAVLVMAESSVPADMPAKKYSTCKKVGHIKMMVIPDLKAATE
EDWIKRSVDAKAEATTDAADSYSTLVRNGAVAGHETYVMKDKAMVGRVLPWVHISISNAKRSILDTYHDIKADFLQLYLNEFCYKFNRRYFSFYLFEKLE
LCACTNRTSFKH
RYQPVWEMMHKLRDVMGKRDGLYRLFDQVELDEGFFTTETPDSEKGHPLKRGHGSQRKTAVLVMAESSVPADMPAKKYSTCKKVGHIKMMVIPDLKAATE
EDWIKRSVDAKAEATTDAADSYSTLVRNGAVAGHETYVMKDKAMVGRVLPWVHISISNAKRSILDTYHDIKADFLQLYLNEFCYKFNRRYFSFYLFEKLE
LCACTNRTSFKH
Blast result :
Comments
ISPvsp2 is 66% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017)
2] Durkin,A.S., McCorrison,J., Torralba,M., Gillis,M., Methe,B., Sutton,G. and Nelson,K.E. (2012) Direct GenBank submission.
2] Durkin,A.S., McCorrison,J., Torralba,M., Gillis,M., Methe,B., Sutton,G. and Nelson,K.E. (2012) Direct GenBank submission.