ISBaba6
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012155 | ND | Bacteroidetes bacterium | Bacteroidetes bacterium UKL13-3 |
DNA section
IS Length : 1072 bp
Ends
IR Length : 24/26
IRL : TATGCTTGTCGGGAACTTTACCACAAAAACATTAGAACGTAAATAAATTA
IRR : AATGCTTGTCGGGAACTTTGCCACAAGTTTTTTAATTCCATTGGTATAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTACACTAAAT | AAATAATT | ACATTTTGAT | 8 |
DNA sequence
TATGCTTGTCGGGAACTTTACCACAAAAACATTAGAACGTAAATAAATTACGTAGTTCAGGTCGTAAATTCGCCTCAAAATATAGAAAATATGAGGTTGC
TAGAGTTTTATAATTCATTTCCAACAGAAGAATCTTGTAAAAAGGATTTTAAATTAATGAGAGAAAAAGTTGGTATTACTTGTAAAGTTTGTGGTGGTTG
CGCACACTACTGGCTTAAATCAAAAGAAATGTATCAATGTAAGTTAAACAGTTGTAGGTTTAGAACTTCATTAAAGAGTGGAACTGTCATGGAAAACAGT
AAACTTTCTTTTCATATATGGTATAAAGCAATGCATCTAATAACAGCAACAAAAAATAATATTTCAGCAGTCGAGGTTCAACGCCAGTTAGGAATAAAAA
ATTATGAACCTGTATTTGAGATGCTTAATAAACTTAGATTAATCATGGGGAAACGAGATGAGCAATACACTTTAGATGGAATAGTAGAATTTGACGAAGG
ATTTTTTTCGAATTCAGAAATTCTTAAAGAGAATGAATTTACTAACCAAAAAGAAGAACTTAAACGAGGTAAAGGTTCTCAAAAGAAATCAGCTATTGCT
GTTCTTCATTCCACCTCAAAAGTAGAGCTAAACTTAAAGTCTAAATCAAAACACAAGTCTGATCGTAAACCAAAGTTTTTAAAGATGTACCAGCTCGCTT
TTGTGAATTCTAAAGAAATTTCACAAACAATCAAAAAATCTATCTCTAAAAAGGCAGAACTAATAACAGATAAAGCAAAGTATTATAACGATTTACAAGA
TAAAGTAACAAAACATACTCCTTACGATTCTAAAAAAGTGAATATATTGAAAGTTCTTCCCTGGGTCCACAAAGCTATATCTAATATAAAAGGAACGTTA
TGGAACATCTATAAGGGTGTAAGTAATGATTATATGCAAAACTATTTAAGTGAGTATTGTTTTAAATACAACAGGAGAAGTTTCGGAGTAAATGTTTTCA
ATAGACTTGTTCTAGCTTCAGCATTATACCAATGGAATTAAAAAACTTGTGGCAAAGTTCCCGACAAGCATT
TAGAGTTTTATAATTCATTTCCAACAGAAGAATCTTGTAAAAAGGATTTTAAATTAATGAGAGAAAAAGTTGGTATTACTTGTAAAGTTTGTGGTGGTTG
CGCACACTACTGGCTTAAATCAAAAGAAATGTATCAATGTAAGTTAAACAGTTGTAGGTTTAGAACTTCATTAAAGAGTGGAACTGTCATGGAAAACAGT
AAACTTTCTTTTCATATATGGTATAAAGCAATGCATCTAATAACAGCAACAAAAAATAATATTTCAGCAGTCGAGGTTCAACGCCAGTTAGGAATAAAAA
ATTATGAACCTGTATTTGAGATGCTTAATAAACTTAGATTAATCATGGGGAAACGAGATGAGCAATACACTTTAGATGGAATAGTAGAATTTGACGAAGG
ATTTTTTTCGAATTCAGAAATTCTTAAAGAGAATGAATTTACTAACCAAAAAGAAGAACTTAAACGAGGTAAAGGTTCTCAAAAGAAATCAGCTATTGCT
GTTCTTCATTCCACCTCAAAAGTAGAGCTAAACTTAAAGTCTAAATCAAAACACAAGTCTGATCGTAAACCAAAGTTTTTAAAGATGTACCAGCTCGCTT
TTGTGAATTCTAAAGAAATTTCACAAACAATCAAAAAATCTATCTCTAAAAAGGCAGAACTAATAACAGATAAAGCAAAGTATTATAACGATTTACAAGA
TAAAGTAACAAAACATACTCCTTACGATTCTAAAAAAGTGAATATATTGAAAGTTCTTCCCTGGGTCCACAAAGCTATATCTAATATAAAAGGAACGTTA
TGGAACATCTATAAGGGTGTAAGTAATGATTATATGCAAAACTATTTAAGTGAGTATTGTTTTAAATACAACAGGAGAAGTTTCGGAGTAAATGTTTTCA
ATAGACTTGTTCTAGCTTCAGCATTATACCAATGGAATTAAAAAACTTGTGGCAAAGTTCCCGACAAGCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 91 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MRLLEFYNSFPTEESCKKDFKLMREKVGITCKVCGGCAHYWLKSKEMYQCKLNSCRFRTSLKSGTVMENSKLSFHIWYKAMHLITATKNNISAVEVQRQL
GIKNYEPVFEMLNKLRLIMGKRDEQYTLDGIVEFDEGFFSNSEILKENEFTNQKEELKRGKGSQKKSAIAVLHSTSKVELNLKSKSKHKSDRKPKFLKMY
QLAFVNSKEISQTIKKSISKKAELITDKAKYYNDLQDKVTKHTPYDSKKVNILKVLPWVHKAISNIKGTLWNIYKGVSNDYMQNYLSEYCFKYNRRSFGV
NVFNRLVLASALYQWN
GIKNYEPVFEMLNKLRLIMGKRDEQYTLDGIVEFDEGFFSNSEILKENEFTNQKEELKRGKGSQKKSAIAVLHSTSKVELNLKSKSKHKSDRKPKFLKMY
QLAFVNSKEISQTIKKSISKKAELITDKAKYYNDLQDKVTKHTPYDSKKVNILKVLPWVHKAISNIKGTLWNIYKGVSNDYMQNYLSEYCFKYNRRSFGV
NVFNRLVLASALYQWN
Blast result :
Comments
ISBaba6 is 65% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017)
2] Driscoll,C.B. (2015) Direct GenBank submission.
2] Driscoll,C.B. (2015) Direct GenBank submission.