ISBaba6

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP012155 ND Bacteroidetes bacterium
Bacteroidetes bacterium UKL13-3
DNA section
IS Length : 1072 bp

Ends


IR Length : 24/26

IRL : TATGCTTGTCGGGAACTTTACCACAAAAACATTAGAACGTAAATAAATTA
IRR : AATGCTTGTCGGGAACTTTGCCACAAGTTTTTTAATTCCATTGGTATAAT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTACACTAAATAAATAATTACATTTTGAT8

DNA sequence

TATGCTTGTCGGGAACTTTACCACAAAAACATTAGAACGTAAATAAATTACGTAGTTCAGGTCGTAAATTCGCCTCAAAATATAGAAAATATGAGGTTGC
TAGAGTTTTATAATTCATTTCCAACAGAAGAATCTTGTAAAAAGGATTTTAAATTAATGAGAGAAAAAGTTGGTATTACTTGTAAAGTTTGTGGTGGTTG
CGCACACTACTGGCTTAAATCAAAAGAAATGTATCAATGTAAGTTAAACAGTTGTAGGTTTAGAACTTCATTAAAGAGTGGAACTGTCATGGAAAACAGT
AAACTTTCTTTTCATATATGGTATAAAGCAATGCATCTAATAACAGCAACAAAAAATAATATTTCAGCAGTCGAGGTTCAACGCCAGTTAGGAATAAAAA
ATTATGAACCTGTATTTGAGATGCTTAATAAACTTAGATTAATCATGGGGAAACGAGATGAGCAATACACTTTAGATGGAATAGTAGAATTTGACGAAGG
ATTTTTTTCGAATTCAGAAATTCTTAAAGAGAATGAATTTACTAACCAAAAAGAAGAACTTAAACGAGGTAAAGGTTCTCAAAAGAAATCAGCTATTGCT
GTTCTTCATTCCACCTCAAAAGTAGAGCTAAACTTAAAGTCTAAATCAAAACACAAGTCTGATCGTAAACCAAAGTTTTTAAAGATGTACCAGCTCGCTT
TTGTGAATTCTAAAGAAATTTCACAAACAATCAAAAAATCTATCTCTAAAAAGGCAGAACTAATAACAGATAAAGCAAAGTATTATAACGATTTACAAGA
TAAAGTAACAAAACATACTCCTTACGATTCTAAAAAAGTGAATATATTGAAAGTTCTTCCCTGGGTCCACAAAGCTATATCTAATATAAAAGGAACGTTA
TGGAACATCTATAAGGGTGTAAGTAATGATTATATGCAAAACTATTTAAGTGAGTATTGTTTTAAATACAACAGGAGAAGTTTCGGAGTAAATGTTTTCA
ATAGACTTGTTCTAGCTTCAGCATTATACCAATGGAATTAAAAAACTTGTGGCAAAGTTCCCGACAAGCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa911041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRLLEFYNSFPTEESCKKDFKLMREKVGITCKVCGGCAHYWLKSKEMYQCKLNSCRFRTSLKSGTVMENSKLSFHIWYKAMHLITATKNNISAVEVQRQL
GIKNYEPVFEMLNKLRLIMGKRDEQYTLDGIVEFDEGFFSNSEILKENEFTNQKEELKRGKGSQKKSAIAVLHSTSKVELNLKSKSKHKSDRKPKFLKMY
QLAFVNSKEISQTIKKSISKKAELITDKAKYYNDLQDKVTKHTPYDSKKVNILKVLPWVHKAISNIKGTLWNIYKGVSNDYMQNYLSEYCFKYNRRSFGV
NVFNRLVLASALYQWN

 

Blast result :
Comments
ISBaba6 is 65% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017)
2] Driscoll,C.B. (2015) Direct GenBank submission.