ISPvsp1
- Family IS1595
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CAYW010000122 | ND | Prevotella sp. | Prevotella sp. CAG:1185 |
DNA section
IS Length : 1090 bp
Ends
IR Length : 20/23
IRL : TATGAATGTCCGCAAACGTCCAAATTAGCAAAGTTTAAACAGGCTCTGAG
IRR : AATGAATGTCCGCAAATATCCAATTAGTAAATTCGATGTTTAAACTCAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATGAGCCGTT | AAATATA | TTCAACAGAT | 7 |
DNA sequence
TATGAATGTCCGCAAACGTCCAAATTAGCAAAGTTTAAACAGGCTCTGAGATGCCAATGCAGGCATAGGAACAGAATTTGCAGGCATTCCATGTAAAACA
ATTGAAAGGAAACACAATGAATCTGCTTGACTTCTACCGTCAATATCCTGACGAAAGCTCCTGCGAGGAGGCTCTCCGTCGTTTCCGTGAACGCCACGGT
CTTTTCTGTAGCCGCTGCGGCGGTTTGCGTTTGAGTTGGAATCCGAGCCACCGTTCTTGGACCTGCATGGACTGTAAGCATGAGATGACCTTGCGTTCCG
GTACTGTGATGCAGGGAAGCAACCTGCCCATCCGCGACTGGTTCGCCGCCATGTACCTTCTGACGGCGACCAAACGTGCCATATCCTCCAAGGAAATCCA
ACGCCAACTGGGGCGCAAGCGTTACCAGCCCGTATGGGAAATGGTGCACAAGCTTCGTGACGTGATGGGCAAGCGTGACTCACGCTATAATCTTCATGGA
GATGTGGAGATAGACGAAGGGTTCTTCTCCACCGAGACGCCTGAGGCTCAGAAAGACTGCCCGCTCAAACGTGGACGTGGAAGCCAGCGCAAGACATCCG
TCCTTGTCATGGCTGAAAGCAGTTTCCCGGACACTCCTTCCGATAAGAAGCGGAGTACCCCTAAAATCGTGGGACACATAAAGATGGAGGTAATAGACGA
TTTGAAGGCTTCCACCGAAACTCCCAGGATAAAACAGGCGACAGACGGGAAGGCAAATGCCACTACGGACGGTTCCAGCACATACGCATCCCTTGAAAAG
GACGGGGCAGTGGCTTCCCACAAGGCCGTTGTCATGGATGACAAGAAAAAACTCGGAAAGGTTCTACCTTGGGTACATATCGCCATCAGCAACGCCAAGA
GGAGCATCCTTGACACCTACCATGACATAAAGGCGGAATTCCTGCAACTCTACCTTAACGAATTCTGCTACAAGTTCAACCGAAGGTATTTTGGTTTTAG
GCTCTTTGAGAGGTTGGAACTCTGTGCTTGCACTTATAGAGCTGAGTTTAAACATCGAATTTACTAATTGGATATTTGCGGACATTCATT
ATTGAAAGGAAACACAATGAATCTGCTTGACTTCTACCGTCAATATCCTGACGAAAGCTCCTGCGAGGAGGCTCTCCGTCGTTTCCGTGAACGCCACGGT
CTTTTCTGTAGCCGCTGCGGCGGTTTGCGTTTGAGTTGGAATCCGAGCCACCGTTCTTGGACCTGCATGGACTGTAAGCATGAGATGACCTTGCGTTCCG
GTACTGTGATGCAGGGAAGCAACCTGCCCATCCGCGACTGGTTCGCCGCCATGTACCTTCTGACGGCGACCAAACGTGCCATATCCTCCAAGGAAATCCA
ACGCCAACTGGGGCGCAAGCGTTACCAGCCCGTATGGGAAATGGTGCACAAGCTTCGTGACGTGATGGGCAAGCGTGACTCACGCTATAATCTTCATGGA
GATGTGGAGATAGACGAAGGGTTCTTCTCCACCGAGACGCCTGAGGCTCAGAAAGACTGCCCGCTCAAACGTGGACGTGGAAGCCAGCGCAAGACATCCG
TCCTTGTCATGGCTGAAAGCAGTTTCCCGGACACTCCTTCCGATAAGAAGCGGAGTACCCCTAAAATCGTGGGACACATAAAGATGGAGGTAATAGACGA
TTTGAAGGCTTCCACCGAAACTCCCAGGATAAAACAGGCGACAGACGGGAAGGCAAATGCCACTACGGACGGTTCCAGCACATACGCATCCCTTGAAAAG
GACGGGGCAGTGGCTTCCCACAAGGCCGTTGTCATGGATGACAAGAAAAAACTCGGAAAGGTTCTACCTTGGGTACATATCGCCATCAGCAACGCCAAGA
GGAGCATCCTTGACACCTACCATGACATAAAGGCGGAATTCCTGCAACTCTACCTTAACGAATTCTGCTACAAGTTCAACCGAAGGTATTTTGGTTTTAG
GCTCTTTGAGAGGTTGGAACTCTGTGCTTGCACTTATAGAGCTGAGTTTAAACATCGAATTTACTAATTGGATATTTGCGGACATTCATT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 951 bp | 316 aa | 117 | 1067 | + | No |
Chemistry : DDE
ORF sequence :
MNLLDFYRQYPDESSCEEALRRFRERHGLFCSRCGGLRLSWNPSHRSWTCMDCKHEMTLRSGTVMQGSNLPIRDWFAAMYLLTATKRAISSKEIQRQLGR
KRYQPVWEMVHKLRDVMGKRDSRYNLHGDVEIDEGFFSTETPEAQKDCPLKRGRGSQRKTSVLVMAESSFPDTPSDKKRSTPKIVGHIKMEVIDDLKAST
ETPRIKQATDGKANATTDGSSTYASLEKDGAVASHKAVVMDDKKKLGKVLPWVHIAISNAKRSILDTYHDIKAEFLQLYLNEFCYKFNRRYFGFRLFERL
ELCACTYRAEFKHRIY
KRYQPVWEMVHKLRDVMGKRDSRYNLHGDVEIDEGFFSTETPEAQKDCPLKRGRGSQRKTSVLVMAESSFPDTPSDKKRSTPKIVGHIKMEVIDDLKAST
ETPRIKQATDGKANATTDGSSTYASLEKDGAVASHKAVVMDDKKKLGKVLPWVHIAISNAKRSILDTYHDIKAEFLQLYLNEFCYKFNRRYFGFRLFERL
ELCACTYRAEFKHRIY
Blast result :
Comments
ISPvsp1 is 70% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017).
2] Nielsen,H.B., Almeida,M., Juncker,A.S., Rasmussen,S., Li,J., Sunagawa,S., Plichta,D., Gautier,L., Le Chatelier,E., Peletier,E., Bonde,I., Nielsen,T., Manichanh,C., Arumugam,M., Batto,J., Santos,M.B.Q.D., Blom,N., Borruel,N., Burgdorf,K.S., Boumezbeur,F., Casellas,F., Dore,J., Guarner,F., Hansen,T., Hildebrand,F., Kaas,R.S., Kennedy,S., Kristiansen,K., Kultima,J.R., Leonard,P., Levenez,F., Lund,O., Moumen,B., Le Paslier,D., Pons,N., Pedersen,O., Prifti,E., Qin,J., Raes,J., Tap,J., Tims,S., Ussery,D.W., Yamada,T., MetaHit,consortium., Renault,P., Sicheritz-Ponten,T., Bork,P., Wang,J., Brunak,S. and Ehrlich,S.D. (2012) Direct GenBank submission.
2] Nielsen,H.B., Almeida,M., Juncker,A.S., Rasmussen,S., Li,J., Sunagawa,S., Plichta,D., Gautier,L., Le Chatelier,E., Peletier,E., Bonde,I., Nielsen,T., Manichanh,C., Arumugam,M., Batto,J., Santos,M.B.Q.D., Blom,N., Borruel,N., Burgdorf,K.S., Boumezbeur,F., Casellas,F., Dore,J., Guarner,F., Hansen,T., Hildebrand,F., Kaas,R.S., Kennedy,S., Kristiansen,K., Kultima,J.R., Leonard,P., Levenez,F., Lund,O., Moumen,B., Le Paslier,D., Pons,N., Pedersen,O., Prifti,E., Qin,J., Raes,J., Tap,J., Tims,S., Ussery,D.W., Yamada,T., MetaHit,consortium., Renault,P., Sicheritz-Ponten,T., Bork,P., Wang,J., Brunak,S. and Ehrlich,S.D. (2012) Direct GenBank submission.