ISPbu1
- Family IS1595
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AEPD01000037 | ND | Prevotella buccae | Prevotella buccae ATCC 33574 |
DNA section
IS Length : 1061 bp
Ends
IR Length : 21/25
IRL : AATAATCATCCGCATTTTGGTGTTATTTAACTCTGTGGATTTGGCTGTGT
IRR : TATGATTATCCGCATTTTGGTGATACATACCCATACATTCGATGTTCGAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATAGTTGTGAATAAAACGAA | AACGTAATATAAGGTTGTTG | 0 |
DNA sequence
AATAATCATCCGCATTTTGGTGTTATTTAACTCTGTGGATTTGGCTGTGTGCCCAAATGTTGGTATCTTTATTGAAAATTGTTCATAGATATGAAATTGT
TAGAGTTCACGAAACGTTTTCCCGATGAGGAATCATGTGAGTTGCATTTGAAGCAAGAGCGTGAGAAAGCAGGTGTGGTTTGCAGTCATTATGGCTATAC
GCATCACAGATGGGACAAGTACAATAAATGCTGGGTATGCAGCAAATGTGGGCATCACACCACCTTGCGTAGCGGAACTGTCATGCACGGCTCCAAATTG
CCGTTGATGTACTGGTTTACCGCTATCCACCTGATGACCTCAACAAAGAAGATTTTTTCGGCTTTTGAAATGCAACGTCAGCTTGGACACAAGCGTTACC
AGGCCATTTGGGAAATGATGCACAAACTACGTTCCGTAATGGGATTGCGCGATGGCAAGTACAACCTGGACGGTGTGATTGAACTGGACGAGGGGTTCTT
CACTTGTGATGACAAACGGAATGATGGTCAGAAGAAGGATCATTTAAAGTCCGGTCTGGGCAGCGAAAGGAAGGTCTCTGTGCTTGTTATGGCAGAGAGC
GAGCCATGTGAACCAAAGAAGAAAGGGCAGAAATGTCGTAAGGTGGGTCACTTGAATATGAAGGTGATGAAGGATCTGAAGCCAGAGACGGTAAACAAGC
TTGTCGGCGAAGGGCTTTCCAAGGGAGCAAAGATAGACTCAGACGCATATCCGTCACATGGCCAGCTTGAAAAAGTAGTTTCCGAGGTTAATGCAAAGGT
TGTAAAACCGAAAGACACACCGAAGGCTCTTCCATGGGTTCACACGGCCATAGCAAATGCAAAGAGCCTGTTCAGGGATATGTTTCACGGCATCAAGGAC
GAATTCCTGCAAGAATATCTCAACGAGTTCTGTTACAATTTTAACCGCAGATATTTCGGGGATAGAGTGTTTGACAGACTTGTCATAGCTGCTGTGTCCT
ACAAACCGAATTTCGAACATCGAATGTATGGGTATGTATCACCAAAATGCGGATAATCATA
TAGAGTTCACGAAACGTTTTCCCGATGAGGAATCATGTGAGTTGCATTTGAAGCAAGAGCGTGAGAAAGCAGGTGTGGTTTGCAGTCATTATGGCTATAC
GCATCACAGATGGGACAAGTACAATAAATGCTGGGTATGCAGCAAATGTGGGCATCACACCACCTTGCGTAGCGGAACTGTCATGCACGGCTCCAAATTG
CCGTTGATGTACTGGTTTACCGCTATCCACCTGATGACCTCAACAAAGAAGATTTTTTCGGCTTTTGAAATGCAACGTCAGCTTGGACACAAGCGTTACC
AGGCCATTTGGGAAATGATGCACAAACTACGTTCCGTAATGGGATTGCGCGATGGCAAGTACAACCTGGACGGTGTGATTGAACTGGACGAGGGGTTCTT
CACTTGTGATGACAAACGGAATGATGGTCAGAAGAAGGATCATTTAAAGTCCGGTCTGGGCAGCGAAAGGAAGGTCTCTGTGCTTGTTATGGCAGAGAGC
GAGCCATGTGAACCAAAGAAGAAAGGGCAGAAATGTCGTAAGGTGGGTCACTTGAATATGAAGGTGATGAAGGATCTGAAGCCAGAGACGGTAAACAAGC
TTGTCGGCGAAGGGCTTTCCAAGGGAGCAAAGATAGACTCAGACGCATATCCGTCACATGGCCAGCTTGAAAAAGTAGTTTCCGAGGTTAATGCAAAGGT
TGTAAAACCGAAAGACACACCGAAGGCTCTTCCATGGGTTCACACGGCCATAGCAAATGCAAAGAGCCTGTTCAGGGATATGTTTCACGGCATCAAGGAC
GAATTCCTGCAAGAATATCTCAACGAGTTCTGTTACAATTTTAACCGCAGATATTTCGGGGATAGAGTGTTTGACAGACTTGTCATAGCTGCTGTGTCCT
ACAAACCGAATTTCGAACATCGAATGTATGGGTATGTATCACCAAAATGCGGATAATCATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 966 bp | 321 aa | 91 | 1056 | + | No |
Chemistry : DDE
ORF sequence :
MKLLEFTKRFPDEESCELHLKQEREKAGVVCSHYGYTHHRWDKYNKCWVCSKCGHHTTLRSGTVMHGSKLPLMYWFTAIHLMTSTKKIFSAFEMQRQLGH
KRYQAIWEMMHKLRSVMGLRDGKYNLDGVIELDEGFFTCDDKRNDGQKKDHLKSGLGSERKVSVLVMAESEPCEPKKKGQKCRKVGHLNMKVMKDLKPET
VNKLVGEGLSKGAKIDSDAYPSHGQLEKVVSEVNAKVVKPKDTPKALPWVHTAIANAKSLFRDMFHGIKDEFLQEYLNEFCYNFNRRYFGDRVFDRLVIA
AVSYKPNFEHRMYGYVSPKCG
KRYQAIWEMMHKLRSVMGLRDGKYNLDGVIELDEGFFTCDDKRNDGQKKDHLKSGLGSERKVSVLVMAESEPCEPKKKGQKCRKVGHLNMKVMKDLKPET
VNKLVGEGLSKGAKIDSDAYPSHGQLEKVVSEVNAKVVKPKDTPKALPWVHTAIANAKSLFRDMFHGIKDEFLQEYLNEFCYNFNRRYFGDRVFDRLVIA
AVSYKPNFEHRMYGYVSPKCG
Blast result :
Comments
ISPbu1 is 68% aa similar to ISCrsp1.
References
1] ISfinder annotation (2017)
2] Muzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S. and Gibbs,R. (2010) Direct GenBank submission.
2] Muzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S. and Gibbs,R. (2010) Direct GenBank submission.