ISOdsp1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002544 ND Odoribacter splanchnicus
Odoribacter splanchnicus DSM 20712
DNA section
IS Length : 1100 bp

Ends


IR Length : 22/24

IRL : AATGATTATCCGTATAATGTCCGTTAATTTATTTAACATCATACGAATGT
IRR : AATGATTATCCGCATGATGTCCGTCTATAAATTTTCGACCTAAAGTCGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTGGATGGAAAAATATTTTATGATTAAAACAG7
TCTATGCTCATTTAAAGAATTATGAAGAGTTC7
TGCATATATAATTCAATTATCTTAAAAATGGT7
AGTCTAGCATTAAAAATAATTTCCTTCCCCAA7
AACACGAGGGAAAAATTATTCAATTATCTGAA7

DNA sequence

AATGATTATCCGTATAATGTCCGTTAATTTATTTAACATCATACGAATGTTTTAATGATAAATATTTATACAAAAATATTTGCGTATTTTGCTGAAATTC
AGTATATTCATAATGTTGTTTTAATCCGAAATATCATTATGAACATACTAAATTTCATGCAACGGTTCCCCGATGAAGCATCTTGCATTGCTTATCTGAA
GGAACAGAGGGAACAATCAGGTATTGTCTGCAAACATTGTGGCTGTACGGAACATCGCTGGGATGCCAATAAACTTGTTTTTGAGTGCAAGCACTGCCAT
CATAGGCAATCATTACGCTCCGGAACTGTTATGGAACATAGCAAGCTGCCTTTCCGTTACTGGATAGCAGCCATGTTCCTGCTAACAAGCACTAAGAAAT
CCTTTTCAACAGAGGAAATCCGTCGCCAGTTAGGTCACAAACGTTATCAACCCATCTGGGAGATGGTCTGCAAGCTTCGGGATGTCATGGGAAAGCGTGA
TGAACGCTACCGCCTGACCGGTTCTGTAGAACTGGACGAAGGTTTCTTCACTGTGGAGCTTCAAGAAGAAGAAAAGGACAAACCGTTGAAAAGAGGTCGT
GGCAGTCAAAGGAAAGCCAGGATTCTGGTCATGGTTGAAAGCTCCTATTCTACGAAAACTCCCAAGAGAGGAAGACCCAATAAAGCAGTCGGACACCTCA
AAATGCAGGTCATATCAGATTTGGGGTCGAAGACAATTACCAAGGTTGTCAAAGAGCAACTGGAGCCGTCAGTAGAACTGACTACAGACGATTCCACATC
ATATATCAAGTTTGATAAACTCGTCAAGAGCCATAAGGCGGTCACTTCCGGCAAAGAAGCGGTTAAAGTCTTCCTGCCCTGGGTGCATATTGCAATAAGC
AATGCCAAAAGGCTTCTGTTGGACGTTCATCATAAGCTTAAAAACGAATACTTACAATACTATCTGAATGAGTTCTGCTATAAATTCAACAGACGCTATC
TCGATGAAAAACTATTTGATAGACTCGCTTTCACAGCTATCAACTATAACACCGACTTTAGGTCGAAAATTTATAGACGGACATCATGCGGATAATCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1391095+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNILNFMQRFPDEASCIAYLKEQREQSGIVCKHCGCTEHRWDANKLVFECKHCHHRQSLRSGTVMEHSKLPFRYWIAAMFLLTSTKKSFSTEEIRRQLGH
KRYQPIWEMVCKLRDVMGKRDERYRLTGSVELDEGFFTVELQEEEKDKPLKRGRGSQRKARILVMVESSYSTKTPKRGRPNKAVGHLKMQVISDLGSKTI
TKVVKEQLEPSVELTTDDSTSYIKFDKLVKSHKAVTSGKEAVKVFLPWVHIAISNAKRLLLDVHHKLKNEYLQYYLNEFCYKFNRRYLDEKLFDRLAFTA
INYNTDFRSKIYRRTSCG

 

Blast result :
Comments
ISOdsp1 is 69% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Goker,M., Gronow,S., Zeytun,A., Nolan,M., Lucas,S., Lapidus,A., Hammon,N., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Ovchinikova,G., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Brambilla,E.M., Rohde,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Eisen,J.A., Kyrpides,N.C. and Klenk,H.P. (2011) Stand Genomic Sci 4 (2), 200-209.