ISRps1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AWXR01000010 ND Rhodonellum psychrophilum
Rhodonellum psychrophilum GCM71
Rhodonellum psychrophilum DSM 17998
DNA section
IS Length : 1042 bp

Ends


IR Length : 22/26

IRL : TATGCATATCCGCAATGACACCAGTAGCCAAATAAATATAAAGTGACAGC
IRR : TATGATTATCCGCAATCATACCAGTAAGGATAAATTGAAGCAATGATGAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTAAAAATATTTATTTTTATTATTTTAGACTCAAGGAA8

DNA sequence

TATGCATATCCGCAATGACACCAGTAGCCAAATAAATATAAAGTGACAGCTAGTGACAATTGCTATTTGTGATCATTCAATCTATATAAATTGGGTCAAA
ATAAACGGTTTTGACTATGAATATTATCAATTTCATCAATCGCTTCCCGGATGAATCAGCTTGTATTGAATTCATTAAGTATCAAAGGCTTGAGCAGGGA
GTAATTTGTAAAAGATGTTCATGTTCCAAGCACTACTGGCTTGAAAACAAGAATTCTTTCCAGTGCTCCTCCTGTGGTTTCCGAACCAGTATTAAGAGCG
GAACCGTGATGGAACACAGTAACCTTCCAATTCGTGTCTGGATGCTTGCCATTACCTTCATATCTGCCACAAAGAAAAGTTTCAGTGCTGCAGAGCTTCA
AAGGCAACTGGGCTTAAAGCGATATGAGCCTGTTTTCAGGATGTACCATAAAATCAGGGTTGTAATGGGTAAACGGGATGATATCTACAGGCTTGAAGAT
ATGGTTGAATATGACGAAGCCTTTGTTGGAAAGGCAGTCAACAATAAAACCAAAAACAAGCTCAAACGAGGCAGGGGAAGCCAAAAACAGTCTAAAGTAG
CTGTCATGGCTGAATCAACAGTATTGGAGGATCCTGACTCGGGAAAGCTTGAAAAGAGCTGTAGATATTTCAAGATAAAGAAGATAAAGAACTTGGAGGC
TAAAACAGCACAGGCCTTAATCAAAGAATTCATTGATAAAAGCACTGTCCTTCAAACAGATAAGAGTACCACCTTTTCAGATCTGAGTGATTGTATTGAT
GTTCATGTCAGAGAAACCTCTGGAACAGATCAGGGCAACTTCAACCTTAAATGGGTTCACATTGCCATCAGTAACTTAAAGAAACATCTGCAAACATACC
ATATGATATCTGAGAGGATGATGCAGAACTATCTCGATGAGTTTTGCTATAAGCTCAACAGAAGATATTTTGGTCAAAGATTTTTTGACAGGCTCATCAT
TGCTTCAATTTATCCTTACTGGTATGATTGCGGATAATCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp306 aa1171037+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIINFINRFPDESACIEFIKYQRLEQGVICKRCSCSKHYWLENKNSFQCSSCGFRTSIKSGTVMEHSNLPIRVWMLAITFISATKKSFSAAELQRQLGL
KRYEPVFRMYHKIRVVMGKRDDIYRLEDMVEYDEAFVGKAVNNKTKNKLKRGRGSQKQSKVAVMAESTVLEDPDSGKLEKSCRYFKIKKIKNLEAKTAQA
LIKEFIDKSTVLQTDKSTTFSDLSDCIDVHVRETSGTDQGNFNLKWVHIAISNLKKHLQTYHMISERMMQNYLDEFCYKLNRRYFGQRFFDRLIIASIYP
YWYDCG

 

Blast result :
Comments
ISRps1 is 80% aa similar to ISBeba1.
References
1] ISfinder annotation (2017)
2] Hauptmann,A.L., Glaring,M.A., Hallin,P.F., Prieme,A. and Stougaard,P. (2013) Genome Announc 1 (6), e01014-13.