ISRps1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AWXR01000010 | ND | Rhodonellum psychrophilum | Rhodonellum psychrophilum GCM71 Rhodonellum psychrophilum DSM 17998 |
DNA section
IS Length : 1042 bp
Ends
IR Length : 22/26
IRL : TATGCATATCCGCAATGACACCAGTAGCCAAATAAATATAAAGTGACAGC
IRR : TATGATTATCCGCAATCATACCAGTAAGGATAAATTGAAGCAATGATGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTAAAAATATTTAT | TTTTATTA | TTTTAGACTCAAGGAA | 8 |
DNA sequence
TATGCATATCCGCAATGACACCAGTAGCCAAATAAATATAAAGTGACAGCTAGTGACAATTGCTATTTGTGATCATTCAATCTATATAAATTGGGTCAAA
ATAAACGGTTTTGACTATGAATATTATCAATTTCATCAATCGCTTCCCGGATGAATCAGCTTGTATTGAATTCATTAAGTATCAAAGGCTTGAGCAGGGA
GTAATTTGTAAAAGATGTTCATGTTCCAAGCACTACTGGCTTGAAAACAAGAATTCTTTCCAGTGCTCCTCCTGTGGTTTCCGAACCAGTATTAAGAGCG
GAACCGTGATGGAACACAGTAACCTTCCAATTCGTGTCTGGATGCTTGCCATTACCTTCATATCTGCCACAAAGAAAAGTTTCAGTGCTGCAGAGCTTCA
AAGGCAACTGGGCTTAAAGCGATATGAGCCTGTTTTCAGGATGTACCATAAAATCAGGGTTGTAATGGGTAAACGGGATGATATCTACAGGCTTGAAGAT
ATGGTTGAATATGACGAAGCCTTTGTTGGAAAGGCAGTCAACAATAAAACCAAAAACAAGCTCAAACGAGGCAGGGGAAGCCAAAAACAGTCTAAAGTAG
CTGTCATGGCTGAATCAACAGTATTGGAGGATCCTGACTCGGGAAAGCTTGAAAAGAGCTGTAGATATTTCAAGATAAAGAAGATAAAGAACTTGGAGGC
TAAAACAGCACAGGCCTTAATCAAAGAATTCATTGATAAAAGCACTGTCCTTCAAACAGATAAGAGTACCACCTTTTCAGATCTGAGTGATTGTATTGAT
GTTCATGTCAGAGAAACCTCTGGAACAGATCAGGGCAACTTCAACCTTAAATGGGTTCACATTGCCATCAGTAACTTAAAGAAACATCTGCAAACATACC
ATATGATATCTGAGAGGATGATGCAGAACTATCTCGATGAGTTTTGCTATAAGCTCAACAGAAGATATTTTGGTCAAAGATTTTTTGACAGGCTCATCAT
TGCTTCAATTTATCCTTACTGGTATGATTGCGGATAATCATA
ATAAACGGTTTTGACTATGAATATTATCAATTTCATCAATCGCTTCCCGGATGAATCAGCTTGTATTGAATTCATTAAGTATCAAAGGCTTGAGCAGGGA
GTAATTTGTAAAAGATGTTCATGTTCCAAGCACTACTGGCTTGAAAACAAGAATTCTTTCCAGTGCTCCTCCTGTGGTTTCCGAACCAGTATTAAGAGCG
GAACCGTGATGGAACACAGTAACCTTCCAATTCGTGTCTGGATGCTTGCCATTACCTTCATATCTGCCACAAAGAAAAGTTTCAGTGCTGCAGAGCTTCA
AAGGCAACTGGGCTTAAAGCGATATGAGCCTGTTTTCAGGATGTACCATAAAATCAGGGTTGTAATGGGTAAACGGGATGATATCTACAGGCTTGAAGAT
ATGGTTGAATATGACGAAGCCTTTGTTGGAAAGGCAGTCAACAATAAAACCAAAAACAAGCTCAAACGAGGCAGGGGAAGCCAAAAACAGTCTAAAGTAG
CTGTCATGGCTGAATCAACAGTATTGGAGGATCCTGACTCGGGAAAGCTTGAAAAGAGCTGTAGATATTTCAAGATAAAGAAGATAAAGAACTTGGAGGC
TAAAACAGCACAGGCCTTAATCAAAGAATTCATTGATAAAAGCACTGTCCTTCAAACAGATAAGAGTACCACCTTTTCAGATCTGAGTGATTGTATTGAT
GTTCATGTCAGAGAAACCTCTGGAACAGATCAGGGCAACTTCAACCTTAAATGGGTTCACATTGCCATCAGTAACTTAAAGAAACATCTGCAAACATACC
ATATGATATCTGAGAGGATGATGCAGAACTATCTCGATGAGTTTTGCTATAAGCTCAACAGAAGATATTTTGGTCAAAGATTTTTTGACAGGCTCATCAT
TGCTTCAATTTATCCTTACTGGTATGATTGCGGATAATCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 117 | 1037 | + | No |
Chemistry : DDE
ORF sequence :
MNIINFINRFPDESACIEFIKYQRLEQGVICKRCSCSKHYWLENKNSFQCSSCGFRTSIKSGTVMEHSNLPIRVWMLAITFISATKKSFSAAELQRQLGL
KRYEPVFRMYHKIRVVMGKRDDIYRLEDMVEYDEAFVGKAVNNKTKNKLKRGRGSQKQSKVAVMAESTVLEDPDSGKLEKSCRYFKIKKIKNLEAKTAQA
LIKEFIDKSTVLQTDKSTTFSDLSDCIDVHVRETSGTDQGNFNLKWVHIAISNLKKHLQTYHMISERMMQNYLDEFCYKLNRRYFGQRFFDRLIIASIYP
YWYDCG
KRYEPVFRMYHKIRVVMGKRDDIYRLEDMVEYDEAFVGKAVNNKTKNKLKRGRGSQKQSKVAVMAESTVLEDPDSGKLEKSCRYFKIKKIKNLEAKTAQA
LIKEFIDKSTVLQTDKSTTFSDLSDCIDVHVRETSGTDQGNFNLKWVHIAISNLKKHLQTYHMISERMMQNYLDEFCYKLNRRYFGQRFFDRLIIASIYP
YWYDCG
Blast result :
Comments
ISRps1 is 80% aa similar to ISBeba1.
References
1] ISfinder annotation (2017)
2] Hauptmann,A.L., Glaring,M.A., Hallin,P.F., Prieme,A. and Stougaard,P. (2013) Genome Announc 1 (6), e01014-13.
2] Hauptmann,A.L., Glaring,M.A., Hallin,P.F., Prieme,A. and Stougaard,P. (2013) Genome Announc 1 (6), e01014-13.