ISPba1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNQW01000079 | ND | Porphyromonadaceae bacterium | Porphyromonadaceae bacterium KH3R12 |
DNA section
IS Length : 1086 bp
Ends
IR Length : 21/24
IRL : AATGATTATCCGCAGTTCTTCCTAAAGAATTTAGCGGGAAAAAGTTATAA
IRR : AATGATTATCCGCAATAGTTCCTATTATAAATTCTTGATTTGAAATCGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGAAACTGT | TTAAATTT | TACCGAAATA | 8 |
DNA sequence
AATGATTATCCGCAGTTCTTCCTAAAGAATTTAGCGGGAAAAAGTTATAAATAAGTTTCAAAAAATGTTTGCACAATTCATTGATATTCATTATATTTAC
ATCAATAACAATAAAATAATTCGAGCTATGAATATCCTGGATTTTGCCATAAATTACCCCGATGAGGAGTCCTGTCGGAAAAAATTCAAAGAACAAAGAG
ACCAAATGGGAGTAACCTGTCGGCATTGCAATTGTAAAGAACATTATTGGCTGGAAAACAAGCAGGCCTATGAATGCAAGCGTTGTCGCGCACGCCAAAC
CTTGCGTTCAGGCACTGTCATGCAACACTCCAACCTGCCTTACCGTTACTGGTTCGTCGCCATGCACCTGCTCACAGCCACCAAAGGTTCCTTCTCTACG
GCTGAACTGCAACGCCAATTAGGACACAAGCGCTATCAGCCGATATGGGAAATGGTCAATAAACTGCGTGACGTGATGGGCAAGCGTGATGATGAGTACA
CTCTTGAAGGTGCCATCGAGCTGGACGATGCCTTCTTTTCCACGGAAATATCCCTTGAAGACAGGGATAAACCGTTGAAACGCGGCCGCGGCAGTCAGAA
AAAAACCAAAGTATTGGTAATGGCTGAAAGCAAAACCGTTGAAAACCCCAAACCGGGTAAGAAACCCAAGAAGGTCAGATACCTGAAAATGAAAGTAATC
AACGATTTGAAGTCCGATACAATCACAAAGAATGTCAAAGAACACATCGAGAACACGGCGGATTTAACCACCGATGATTCGACTTCCTATACACAATTAA
AAGAACATGTCCATTCGCATACGGCATCTGTCATCCCACCCAAGGAGCTCCCCAGTGTCCTGCCCTGGGTCCATACGGCAATAAGTAATGCCAAGCGACA
ATTATTGGGCGTATATTACAAAATGAAACCCGAATACTTACAATATTATCTAAATCAGTTCTGTTACAAGTTCAACAGGCGTTATTTCGGTGAGAAGCAG
TTTGACAGGCTTCTGGTAGCTGCCCTCACTTACACGCCCGATTTCAAATCAAGAATTTATAATAGGAACTATTGCGGATAATCATT
ATCAATAACAATAAAATAATTCGAGCTATGAATATCCTGGATTTTGCCATAAATTACCCCGATGAGGAGTCCTGTCGGAAAAAATTCAAAGAACAAAGAG
ACCAAATGGGAGTAACCTGTCGGCATTGCAATTGTAAAGAACATTATTGGCTGGAAAACAAGCAGGCCTATGAATGCAAGCGTTGTCGCGCACGCCAAAC
CTTGCGTTCAGGCACTGTCATGCAACACTCCAACCTGCCTTACCGTTACTGGTTCGTCGCCATGCACCTGCTCACAGCCACCAAAGGTTCCTTCTCTACG
GCTGAACTGCAACGCCAATTAGGACACAAGCGCTATCAGCCGATATGGGAAATGGTCAATAAACTGCGTGACGTGATGGGCAAGCGTGATGATGAGTACA
CTCTTGAAGGTGCCATCGAGCTGGACGATGCCTTCTTTTCCACGGAAATATCCCTTGAAGACAGGGATAAACCGTTGAAACGCGGCCGCGGCAGTCAGAA
AAAAACCAAAGTATTGGTAATGGCTGAAAGCAAAACCGTTGAAAACCCCAAACCGGGTAAGAAACCCAAGAAGGTCAGATACCTGAAAATGAAAGTAATC
AACGATTTGAAGTCCGATACAATCACAAAGAATGTCAAAGAACACATCGAGAACACGGCGGATTTAACCACCGATGATTCGACTTCCTATACACAATTAA
AAGAACATGTCCATTCGCATACGGCATCTGTCATCCCACCCAAGGAGCTCCCCAGTGTCCTGCCCTGGGTCCATACGGCAATAAGTAATGCCAAGCGACA
ATTATTGGGCGTATATTACAAAATGAAACCCGAATACTTACAATATTATCTAAATCAGTTCTGTTACAAGTTCAACAGGCGTTATTTCGGTGAGAAGCAG
TTTGACAGGCTTCTGGTAGCTGCCCTCACTTACACGCCCGATTTCAAATCAAGAATTTATAATAGGAACTATTGCGGATAATCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 65 | 1081 | + | No |
Chemistry : DDE
ORF sequence :
MFAQFIDIHYIYINNNKIIRAMNILDFAINYPDEESCRKKFKEQRDQMGVTCRHCNCKEHYWLENKQAYECKRCRARQTLRSGTVMQHSNLPYRYWFVAM
HLLTATKGSFSTAELQRQLGHKRYQPIWEMVNKLRDVMGKRDDEYTLEGAIELDDAFFSTEISLEDRDKPLKRGRGSQKKTKVLVMAESKTVENPKPGKK
PKKVRYLKMKVINDLKSDTITKNVKEHIENTADLTTDDSTSYTQLKEHVHSHTASVIPPKELPSVLPWVHTAISNAKRQLLGVYYKMKPEYLQYYLNQFC
YKFNRRYFGEKQFDRLLVAALTYTPDFKSRIYNRNYCG
HLLTATKGSFSTAELQRQLGHKRYQPIWEMVNKLRDVMGKRDDEYTLEGAIELDDAFFSTEISLEDRDKPLKRGRGSQKKTKVLVMAESKTVENPKPGKK
PKKVRYLKMKVINDLKSDTITKNVKEHIENTADLTTDDSTSYTQLKEHVHSHTASVIPPKELPSVLPWVHTAISNAKRQLLGVYYKMKPEYLQYYLNQFC
YKFNRRYFGEKQFDRLLVAALTYTPDFKSRIYNRNYCG
Blast result :
Comments
ISPba1 is 78% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.