ISPba1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNQW01000079 ND Porphyromonadaceae bacterium
Porphyromonadaceae bacterium KH3R12
DNA section
IS Length : 1086 bp

Ends


IR Length : 21/24

IRL : AATGATTATCCGCAGTTCTTCCTAAAGAATTTAGCGGGAAAAAGTTATAA
IRR : AATGATTATCCGCAATAGTTCCTATTATAAATTCTTGATTTGAAATCGGG

Insertion site


Left flankDirect repeatRight flankDR Length
AAGAAACTGTTTAAATTTTACCGAAATA8

DNA sequence

AATGATTATCCGCAGTTCTTCCTAAAGAATTTAGCGGGAAAAAGTTATAAATAAGTTTCAAAAAATGTTTGCACAATTCATTGATATTCATTATATTTAC
ATCAATAACAATAAAATAATTCGAGCTATGAATATCCTGGATTTTGCCATAAATTACCCCGATGAGGAGTCCTGTCGGAAAAAATTCAAAGAACAAAGAG
ACCAAATGGGAGTAACCTGTCGGCATTGCAATTGTAAAGAACATTATTGGCTGGAAAACAAGCAGGCCTATGAATGCAAGCGTTGTCGCGCACGCCAAAC
CTTGCGTTCAGGCACTGTCATGCAACACTCCAACCTGCCTTACCGTTACTGGTTCGTCGCCATGCACCTGCTCACAGCCACCAAAGGTTCCTTCTCTACG
GCTGAACTGCAACGCCAATTAGGACACAAGCGCTATCAGCCGATATGGGAAATGGTCAATAAACTGCGTGACGTGATGGGCAAGCGTGATGATGAGTACA
CTCTTGAAGGTGCCATCGAGCTGGACGATGCCTTCTTTTCCACGGAAATATCCCTTGAAGACAGGGATAAACCGTTGAAACGCGGCCGCGGCAGTCAGAA
AAAAACCAAAGTATTGGTAATGGCTGAAAGCAAAACCGTTGAAAACCCCAAACCGGGTAAGAAACCCAAGAAGGTCAGATACCTGAAAATGAAAGTAATC
AACGATTTGAAGTCCGATACAATCACAAAGAATGTCAAAGAACACATCGAGAACACGGCGGATTTAACCACCGATGATTCGACTTCCTATACACAATTAA
AAGAACATGTCCATTCGCATACGGCATCTGTCATCCCACCCAAGGAGCTCCCCAGTGTCCTGCCCTGGGTCCATACGGCAATAAGTAATGCCAAGCGACA
ATTATTGGGCGTATATTACAAAATGAAACCCGAATACTTACAATATTATCTAAATCAGTTCTGTTACAAGTTCAACAGGCGTTATTTCGGTGAGAAGCAG
TTTGACAGGCTTCTGGTAGCTGCCCTCACTTACACGCCCGATTTCAAATCAAGAATTTATAATAGGAACTATTGCGGATAATCATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa651081+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFAQFIDIHYIYINNNKIIRAMNILDFAINYPDEESCRKKFKEQRDQMGVTCRHCNCKEHYWLENKQAYECKRCRARQTLRSGTVMQHSNLPYRYWFVAM
HLLTATKGSFSTAELQRQLGHKRYQPIWEMVNKLRDVMGKRDDEYTLEGAIELDDAFFSTEISLEDRDKPLKRGRGSQKKTKVLVMAESKTVENPKPGKK
PKKVRYLKMKVINDLKSDTITKNVKEHIENTADLTTDDSTSYTQLKEHVHSHTASVIPPKELPSVLPWVHTAISNAKRQLLGVYYKMKPEYLQYYLNQFC
YKFNRRYFGEKQFDRLLVAALTYTPDFKSRIYNRNYCG

 

Blast result :
Comments
ISPba1 is 78% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.