ISBaba5
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MNXO01000026 | ND | Bacteroidetes bacterium | Bacteroidetes bacterium CG2_30_32_10 |
DNA section
IS Length : 997 bp
Ends
IR Length : 28/35
IRL : AATGAATGTCCGTTATATTCCCTAAATTTATTATTTTTGTAAAAAAACAA
IRR : TATGAATGTCCGCCAACTTACCTAAATTTATTTTTGTAACTTACACAAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCTAATTTTATTTTT | TAAAATTTAGTTCATT | 0 |
DNA sequence
AATGAATGTCCGTTATATTCCCTAAATTTATTATTTTTGTAAAAAAACAAATTATGAATCTACTCAATTTTATAACTCAGTTTCCAGATGAAGATACTTG
TAAAAATAAATTCAAGGAAATACGAGATACAGAAGGTGTGATATGTGCTCATTGTGGAGGCAAAGACCATTATTGGAAAAAAGATAAATGGCAATATGAG
TGTAAGAAATGTAAAACCAGAACTACCTTAAGAAGTGGAACAGTGATGCATGGTTCTAAATTGCCATTTCGCTATTGGTTTGTTGCTATGCATTTACTTA
CATCAACCAAAAAGAGTTTTTCTGCACTTGAATTACAGAGGCAACTTGGACATAAACGCTATGAACCTATTTGGAAAATGCTTCATAAATTAAGAGAGGC
AATGGGTAAAAGAGATGATAATTACACTCTATCAGGTCAAATAGAATTAGATGAAGGTTTTTTTTCAACTGAAATAGCAATTGAAGGAAAAAACAACCCA
CTAAAAAGAGGAAGAGGAAGCCAAAAGAAGACCAAAGTTCTTGTTATGGTTGAAAGCAAGGAAGTTGAAGGAGAAAACACAAAAAGAGGGAAACCTCGTA
TAGTTGGGCATTTGAAAATGCAAGTTATTGACAATCTGAAATCAGAAACCATAACGCCTGTTGTGGAAAGTAATATATTGAAAGATTCATTAATAAATAC
CGACGATTCTACATCCTATAATAAATTACACGAAATAGTTAACGAACATAAATCACAAGTAATTCCAAAAGAAAAAGTTGGAGTAATTCTTCCTTGGGTA
CATATTACTATTAGTAATGCAAAGAGATTATTTATTGATATTTATCATGACATCAAACCTAAATATTTACAGAGCTACTTAAATGAATTCTGCTATAAGT
TTAATCGAAGATATTTTGGTGAATTCTTATTTGATAGGCTTTTGGTTGCTTGTGTAAGTTACAAAAATAAATTTAGGTAAGTTGGCGGACATTCATA
TAAAAATAAATTCAAGGAAATACGAGATACAGAAGGTGTGATATGTGCTCATTGTGGAGGCAAAGACCATTATTGGAAAAAAGATAAATGGCAATATGAG
TGTAAGAAATGTAAAACCAGAACTACCTTAAGAAGTGGAACAGTGATGCATGGTTCTAAATTGCCATTTCGCTATTGGTTTGTTGCTATGCATTTACTTA
CATCAACCAAAAAGAGTTTTTCTGCACTTGAATTACAGAGGCAACTTGGACATAAACGCTATGAACCTATTTGGAAAATGCTTCATAAATTAAGAGAGGC
AATGGGTAAAAGAGATGATAATTACACTCTATCAGGTCAAATAGAATTAGATGAAGGTTTTTTTTCAACTGAAATAGCAATTGAAGGAAAAAACAACCCA
CTAAAAAGAGGAAGAGGAAGCCAAAAGAAGACCAAAGTTCTTGTTATGGTTGAAAGCAAGGAAGTTGAAGGAGAAAACACAAAAAGAGGGAAACCTCGTA
TAGTTGGGCATTTGAAAATGCAAGTTATTGACAATCTGAAATCAGAAACCATAACGCCTGTTGTGGAAAGTAATATATTGAAAGATTCATTAATAAATAC
CGACGATTCTACATCCTATAATAAATTACACGAAATAGTTAACGAACATAAATCACAAGTAATTCCAAAAGAAAAAGTTGGAGTAATTCTTCCTTGGGTA
CATATTACTATTAGTAATGCAAAGAGATTATTTATTGATATTTATCATGACATCAAACCTAAATATTTACAGAGCTACTTAAATGAATTCTGCTATAAGT
TTAATCGAAGATATTTTGGTGAATTCTTATTTGATAGGCTTTTGGTTGCTTGTGTAAGTTACAAAAATAAATTTAGGTAAGTTGGCGGACATTCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
927 bp | 308 aa | 54 | 980 | + | No |
Chemistry : DDE
ORF sequence :
MNLLNFITQFPDEDTCKNKFKEIRDTEGVICAHCGGKDHYWKKDKWQYECKKCKTRTTLRSGTVMHGSKLPFRYWFVAMHLLTSTKKSFSALELQRQLGH
KRYEPIWKMLHKLREAMGKRDDNYTLSGQIELDEGFFSTEIAIEGKNNPLKRGRGSQKKTKVLVMVESKEVEGENTKRGKPRIVGHLKMQVIDNLKSETI
TPVVESNILKDSLINTDDSTSYNKLHEIVNEHKSQVIPKEKVGVILPWVHITISNAKRLFIDIYHDIKPKYLQSYLNEFCYKFNRRYFGEFLFDRLLVAC
VSYKNKFR
KRYEPIWKMLHKLREAMGKRDDNYTLSGQIELDEGFFSTEIAIEGKNNPLKRGRGSQKKTKVLVMVESKEVEGENTKRGKPRIVGHLKMQVIDNLKSETI
TPVVESNILKDSLINTDDSTSYNKLHEIVNEHKSQVIPKEKVGVILPWVHITISNAKRLFIDIYHDIKPKYLQSYLNEFCYKFNRRYFGEFLFDRLLVAC
VSYKNKFR
Blast result :
Comments
ISBaba5 is 81% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ Microbiol. doi: 10.1111/1462-2920.13362.
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ Microbiol. doi: 10.1111/1462-2920.13362.