ISBaba5

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MNXO01000026 ND Bacteroidetes bacterium
Bacteroidetes bacterium CG2_30_32_10
DNA section
IS Length : 997 bp

Ends


IR Length : 28/35

IRL : AATGAATGTCCGTTATATTCCCTAAATTTATTATTTTTGTAAAAAAACAA
IRR : TATGAATGTCCGCCAACTTACCTAAATTTATTTTTGTAACTTACACAAGC

Insertion site


Left flankDirect repeatRight flankDR Length
AACCTAATTTTATTTTTTAAAATTTAGTTCATT0

DNA sequence

AATGAATGTCCGTTATATTCCCTAAATTTATTATTTTTGTAAAAAAACAAATTATGAATCTACTCAATTTTATAACTCAGTTTCCAGATGAAGATACTTG
TAAAAATAAATTCAAGGAAATACGAGATACAGAAGGTGTGATATGTGCTCATTGTGGAGGCAAAGACCATTATTGGAAAAAAGATAAATGGCAATATGAG
TGTAAGAAATGTAAAACCAGAACTACCTTAAGAAGTGGAACAGTGATGCATGGTTCTAAATTGCCATTTCGCTATTGGTTTGTTGCTATGCATTTACTTA
CATCAACCAAAAAGAGTTTTTCTGCACTTGAATTACAGAGGCAACTTGGACATAAACGCTATGAACCTATTTGGAAAATGCTTCATAAATTAAGAGAGGC
AATGGGTAAAAGAGATGATAATTACACTCTATCAGGTCAAATAGAATTAGATGAAGGTTTTTTTTCAACTGAAATAGCAATTGAAGGAAAAAACAACCCA
CTAAAAAGAGGAAGAGGAAGCCAAAAGAAGACCAAAGTTCTTGTTATGGTTGAAAGCAAGGAAGTTGAAGGAGAAAACACAAAAAGAGGGAAACCTCGTA
TAGTTGGGCATTTGAAAATGCAAGTTATTGACAATCTGAAATCAGAAACCATAACGCCTGTTGTGGAAAGTAATATATTGAAAGATTCATTAATAAATAC
CGACGATTCTACATCCTATAATAAATTACACGAAATAGTTAACGAACATAAATCACAAGTAATTCCAAAAGAAAAAGTTGGAGTAATTCTTCCTTGGGTA
CATATTACTATTAGTAATGCAAAGAGATTATTTATTGATATTTATCATGACATCAAACCTAAATATTTACAGAGCTACTTAAATGAATTCTGCTATAAGT
TTAATCGAAGATATTTTGGTGAATTCTTATTTGATAGGCTTTTGGTTGCTTGTGTAAGTTACAAAAATAAATTTAGGTAAGTTGGCGGACATTCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa54980+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLLNFITQFPDEDTCKNKFKEIRDTEGVICAHCGGKDHYWKKDKWQYECKKCKTRTTLRSGTVMHGSKLPFRYWFVAMHLLTSTKKSFSALELQRQLGH
KRYEPIWKMLHKLREAMGKRDDNYTLSGQIELDEGFFSTEIAIEGKNNPLKRGRGSQKKTKVLVMVESKEVEGENTKRGKPRIVGHLKMQVIDNLKSETI
TPVVESNILKDSLINTDDSTSYNKLHEIVNEHKSQVIPKEKVGVILPWVHITISNAKRLFIDIYHDIKPKYLQSYLNEFCYKFNRRYFGEFLFDRLLVAC
VSYKNKFR

 

Blast result :
Comments
ISBaba5 is 81% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ Microbiol. doi: 10.1111/1462-2920.13362.