ISBeba1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003281 ND Belliella baltica
Belliella baltica DSM 15883
DNA section
IS Length : 1040 bp

Ends


IR Length : 23/28

IRL : TATGAATATCCGCCTACGTACAAGTAGGCAAATTTTATACTTTGACAATA
IRR : TATGATTATCCGCTTGTATACAAGTAGGGGCAAATGCTTGCAATAACCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTATATTATATTTATGAAACTTTAATTAATAATTATGAAAAACG8
TTTTTATTATCTTAAATAATTATTTATTAATAAAACATGAAAAAA8
GTTAAATTTAAAAGCTTATTAGAGAATAAAGATTAGAAATTTTAA8
CAACTTAATTAACTCAATTAACCAGTTAACCTCTTAAGCCATTTA8
TTTCCAGATCATTTATAATTAAAGTATCTTTATCAATAGACCAAA8

DNA sequence

TATGAATATCCGCCTACGTACAAGTAGGCAAATTTTATACTTTGACAATACGTGTCAATAACTTTCAGGGCTGTATTTTAAGTGTTTAATTGGCTTGAAA
TAAAGAAAGAAGCCATGACTATCCTACAATTCAATGAAAGATATCCAGATGAGGCAAGTTGCATTCATTTCTTTAAGGAACAAAGAGAAAGGGAAGGCAT
TATTTGTAAGAAATGTAAGTCCAGAGAACACTACTGGCTTAATTCTCTCAATATGTTTCAATGTAAACATTGTGAATTTAGGACAGGCCTGAAGAATGGT
ACCGTTATGGAAAACAGCAAGTTGCCATTAAGGATCTGGTTGCTTGCAATGACACTTGTAAGTGCAACCAAGAAGGGGTTTAGCTGCCTGGAACTCCAGA
GGCAGATGGGGCATAGTAGATACGAGACTGTTTTCAGGCTGTACCACAAGCTCCGAGAAGCAATGGGTAAACGTGATAGCCAATATAAACTAGAGGATAT
GGTTGAATATGATGAGGCTTTTGTAAGCAAGGCAACAAAATCTTCGGAAAGGATGAAGCTGAAGAAAGGACGCGGAAGTCAAAAACAAGCTTCCGTTGCT
GTCATGGCTGAATCATCTATTCTTGAAGACTTAATTACCGGAGAAAAGGACAAAAGCTGCAGATATTTCAAGATGGTCAAAATAGATAACTTGAAGGCAA
AAACAGCCGAAAAACTGATAAAAGGCCTGATTGACAAGAAAGCTGTGGTTCAGACTGATGAAAGTACGACTTATTCTAACCTAGAAGATTGTATCGATGT
CCATGTAAGCGAACTATCCTCCACAAAAGAAGGTAAGTTCAATCTCAAATGGGTACATATAGCAATAAGTAACCTCAAAAGAGATCTGCAGAAGTACCAT
ATGGTTTCAGAAAAGATGCTTCAAAACTATCTCAATGAATTCTGTTACAAACTAAACCGAAGATACTTTGGTGAAAAACTATTTGACAGATTGGTTATTG
CAAGCATTTGCCCCTACTTGTATACAAGCGGATAATCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp306 aa1151035+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTILQFNERYPDEASCIHFFKEQREREGIICKKCKSREHYWLNSLNMFQCKHCEFRTGLKNGTVMENSKLPLRIWLLAMTLVSATKKGFSCLELQRQMGH
SRYETVFRLYHKLREAMGKRDSQYKLEDMVEYDEAFVSKATKSSERMKLKKGRGSQKQASVAVMAESSILEDLITGEKDKSCRYFKMVKIDNLKAKTAEK
LIKGLIDKKAVVQTDESTTYSNLEDCIDVHVSELSSTKEGKFNLKWVHIAISNLKRDLQKYHMVSEKMLQNYLNEFCYKLNRRYFGEKLFDRLVIASICP
YLYTSG

 

Blast result :
Comments
ISBeba1 is 69% aa similar to ISBbi1.
References
1] ISfinder annotation (2017)
2] Lucas,S., Copeland,A., Lapidus,A., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Davenport,K., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Ovchinnikova,G., Zeytun,A., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Pomrenke,H., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2012) Direct GenBank submission.