ISBeba1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003281 | ND | Belliella baltica | Belliella baltica DSM 15883 |
DNA section
IS Length : 1040 bp
Ends
IR Length : 23/28
IRL : TATGAATATCCGCCTACGTACAAGTAGGCAAATTTTATACTTTGACAATA
IRR : TATGATTATCCGCTTGTATACAAGTAGGGGCAAATGCTTGCAATAACCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATATTATATTTATGA | AACTTTAA | TTAATAATTATGAAAAACG | 8 |
TTTTTATTATCTTAAATA | ATTATTTA | TTAATAAAACATGAAAAAA | 8 |
GTTAAATTTAAAAGCTTA | TTAGAGAA | TAAAGATTAGAAATTTTAA | 8 |
CAACTTAATTAACTCAAT | TAACCAGT | TAACCTCTTAAGCCATTTA | 8 |
TTTCCAGATCATTTATAA | TTAAAGTA | TCTTTATCAATAGACCAAA | 8 |
DNA sequence
TATGAATATCCGCCTACGTACAAGTAGGCAAATTTTATACTTTGACAATACGTGTCAATAACTTTCAGGGCTGTATTTTAAGTGTTTAATTGGCTTGAAA
TAAAGAAAGAAGCCATGACTATCCTACAATTCAATGAAAGATATCCAGATGAGGCAAGTTGCATTCATTTCTTTAAGGAACAAAGAGAAAGGGAAGGCAT
TATTTGTAAGAAATGTAAGTCCAGAGAACACTACTGGCTTAATTCTCTCAATATGTTTCAATGTAAACATTGTGAATTTAGGACAGGCCTGAAGAATGGT
ACCGTTATGGAAAACAGCAAGTTGCCATTAAGGATCTGGTTGCTTGCAATGACACTTGTAAGTGCAACCAAGAAGGGGTTTAGCTGCCTGGAACTCCAGA
GGCAGATGGGGCATAGTAGATACGAGACTGTTTTCAGGCTGTACCACAAGCTCCGAGAAGCAATGGGTAAACGTGATAGCCAATATAAACTAGAGGATAT
GGTTGAATATGATGAGGCTTTTGTAAGCAAGGCAACAAAATCTTCGGAAAGGATGAAGCTGAAGAAAGGACGCGGAAGTCAAAAACAAGCTTCCGTTGCT
GTCATGGCTGAATCATCTATTCTTGAAGACTTAATTACCGGAGAAAAGGACAAAAGCTGCAGATATTTCAAGATGGTCAAAATAGATAACTTGAAGGCAA
AAACAGCCGAAAAACTGATAAAAGGCCTGATTGACAAGAAAGCTGTGGTTCAGACTGATGAAAGTACGACTTATTCTAACCTAGAAGATTGTATCGATGT
CCATGTAAGCGAACTATCCTCCACAAAAGAAGGTAAGTTCAATCTCAAATGGGTACATATAGCAATAAGTAACCTCAAAAGAGATCTGCAGAAGTACCAT
ATGGTTTCAGAAAAGATGCTTCAAAACTATCTCAATGAATTCTGTTACAAACTAAACCGAAGATACTTTGGTGAAAAACTATTTGACAGATTGGTTATTG
CAAGCATTTGCCCCTACTTGTATACAAGCGGATAATCATA
TAAAGAAAGAAGCCATGACTATCCTACAATTCAATGAAAGATATCCAGATGAGGCAAGTTGCATTCATTTCTTTAAGGAACAAAGAGAAAGGGAAGGCAT
TATTTGTAAGAAATGTAAGTCCAGAGAACACTACTGGCTTAATTCTCTCAATATGTTTCAATGTAAACATTGTGAATTTAGGACAGGCCTGAAGAATGGT
ACCGTTATGGAAAACAGCAAGTTGCCATTAAGGATCTGGTTGCTTGCAATGACACTTGTAAGTGCAACCAAGAAGGGGTTTAGCTGCCTGGAACTCCAGA
GGCAGATGGGGCATAGTAGATACGAGACTGTTTTCAGGCTGTACCACAAGCTCCGAGAAGCAATGGGTAAACGTGATAGCCAATATAAACTAGAGGATAT
GGTTGAATATGATGAGGCTTTTGTAAGCAAGGCAACAAAATCTTCGGAAAGGATGAAGCTGAAGAAAGGACGCGGAAGTCAAAAACAAGCTTCCGTTGCT
GTCATGGCTGAATCATCTATTCTTGAAGACTTAATTACCGGAGAAAAGGACAAAAGCTGCAGATATTTCAAGATGGTCAAAATAGATAACTTGAAGGCAA
AAACAGCCGAAAAACTGATAAAAGGCCTGATTGACAAGAAAGCTGTGGTTCAGACTGATGAAAGTACGACTTATTCTAACCTAGAAGATTGTATCGATGT
CCATGTAAGCGAACTATCCTCCACAAAAGAAGGTAAGTTCAATCTCAAATGGGTACATATAGCAATAAGTAACCTCAAAAGAGATCTGCAGAAGTACCAT
ATGGTTTCAGAAAAGATGCTTCAAAACTATCTCAATGAATTCTGTTACAAACTAAACCGAAGATACTTTGGTGAAAAACTATTTGACAGATTGGTTATTG
CAAGCATTTGCCCCTACTTGTATACAAGCGGATAATCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 115 | 1035 | + | No |
Chemistry : DDE
ORF sequence :
MTILQFNERYPDEASCIHFFKEQREREGIICKKCKSREHYWLNSLNMFQCKHCEFRTGLKNGTVMENSKLPLRIWLLAMTLVSATKKGFSCLELQRQMGH
SRYETVFRLYHKLREAMGKRDSQYKLEDMVEYDEAFVSKATKSSERMKLKKGRGSQKQASVAVMAESSILEDLITGEKDKSCRYFKMVKIDNLKAKTAEK
LIKGLIDKKAVVQTDESTTYSNLEDCIDVHVSELSSTKEGKFNLKWVHIAISNLKRDLQKYHMVSEKMLQNYLNEFCYKLNRRYFGEKLFDRLVIASICP
YLYTSG
SRYETVFRLYHKLREAMGKRDSQYKLEDMVEYDEAFVSKATKSSERMKLKKGRGSQKQASVAVMAESSILEDLITGEKDKSCRYFKMVKIDNLKAKTAEK
LIKGLIDKKAVVQTDESTTYSNLEDCIDVHVSELSSTKEGKFNLKWVHIAISNLKRDLQKYHMVSEKMLQNYLNEFCYKLNRRYFGEKLFDRLVIASICP
YLYTSG
Blast result :
Comments
ISBeba1 is 69% aa similar to ISBbi1.
References
1] ISfinder annotation (2017)
2] Lucas,S., Copeland,A., Lapidus,A., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Davenport,K., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Ovchinnikova,G., Zeytun,A., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Pomrenke,H., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2012) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Davenport,K., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Ovchinnikova,G., Zeytun,A., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Pomrenke,H., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2012) Direct GenBank submission.