ISCdo1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LDJX01000005 ND Croceitalea dokdonensis
Croceitalea dokdonensis DOKDO 023
DNA section
IS Length : 991 bp

Ends


IR Length : 18/23

IRL : TTGAATATCCGTAATTACACCTATATTTTGTATATTGTGCTGAAATAGCA
IRR : TTGAATATTCGTTTTCATACCTAATTAGAATTGATTGCGGTGATAATCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTATATGTAATTGCATATAAATAAATGATAAATTACCATA8

DNA sequence

TTGAATATCCGTAATTACACCTATATTTTGTATATTGTGCTGAAATAGCACTATATAAAGCTATGAATTTATTCACGTTTACCGCTCATTTTGGAGATGA
AAACACCTGCCGACAGCACTTTAAGGAACAACGGGATGCTCAAGGCGTGGTATGCAAGAAATGTGGAAGCGTAGCGCACTACTGGAAAAAGGATAAATGC
AGCTACGAGTGTAAATCTTGTAAATTCAGAACCTCTCTTCGTAGCGGAACGATCATGCAAAATTCCAACCTACCATTTTTGGTATGGTATCGTGCCATGT
TTTTGATGAGCACCACCAAGAAAGGTTTTTCAGCAAAAGAGATGCAACGTCAATTAGGGCTAAAACGTTATGAGCCAGTATGGGCCATGGTCCACAAGCT
GCGCAAAGCCATGGGAGATAGGGATGCCAGCTATACCTTAGAGGGTATGATAGAGATGGACGAAGGATATTTTACTATTGAATCCTCTGAGGTTGAGCAG
AAGAAAGGCAAGCGTGGTAGAGGCGCGGCAGGCAAACAAAACGTTGCGGTCATGGCAGAGAGCACCCAGCTTGAAGACCCAAGAACGGGCAACAAATCCA
GTCAGGTCAGATACTTTAAAGCCAAAGTGTTACAAAGTCATCAATCCAATGAAATCAATGAAACCATTGAAGAATCGCTGGATGAAAAGTCTATCGTGCT
CACCGATAAAAGTACCTCTTATGTGGATATTGCGGATTACGTAGAGATGCACGTTATGGAAAAATCCAGTGAAGAATCCACCAAAGAGACCTTAAAATGG
GTTCATATATTTATCCGTAACGCTAAAAGAAACCTACTGGGCAACTATCATAAAATAAAGGGTAAGTATCTGCAGGCGTATCTCAACGAATTTGTCTATA
AACTCAACAGACGATACTTCGGAGAGAAACTATTTGATAGATTGATTATCACCGCAATCAATTCTAATTAGGTATGAAAACGAATATTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
909 bp302 aa63971+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLFTFTAHFGDENTCRQHFKEQRDAQGVVCKKCGSVAHYWKKDKCSYECKSCKFRTSLRSGTIMQNSNLPFLVWYRAMFLMSTTKKGFSAKEMQRQLGL
KRYEPVWAMVHKLRKAMGDRDASYTLEGMIEMDEGYFTIESSEVEQKKGKRGRGAAGKQNVAVMAESTQLEDPRTGNKSSQVRYFKAKVLQSHQSNEINE
TIEESLDEKSIVLTDKSTSYVDIADYVEMHVMEKSSEESTKETLKWVHIFIRNAKRNLLGNYHKIKGKYLQAYLNEFVYKLNRRYFGEKLFDRLIITAIN
SN

 

Blast result :
Comments
ISCdo1 is 87% aa similar to ISAlg2.
References
1] ISfinder annotation (2017)
2] Kwon,S.-K., Lee,H.K., Kwak,M.-J. and Kim,J.F. (2015) Direct GenBank submission.