ISMod1
- Family IS1595
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AGZL01000013 | ND | Myroides odoratimimus | Myroides odoratimimus CCUG 12700 |
DNA section
IS Length : 989 bp
Ends
IR Length : 19/25
IRL : AATGTATCTCCGTTTAATGACATAATGGTATATTTGCATTCTAAAAGAGA
IRR : TATGTATCTCCGTTTTTAGTCATAAGCAGTAATATTGGCAATAATAAGCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CATAAATAGA | TAATATTA | TGATCGGTCA | 8 |
DNA sequence
AATGTATCTCCGTTTAATGACATAATGGTATATTTGCATTCTAAAAGAGAGAAATCATATGGCCAATCTATTTACCTTTTCAGCCGAATTTACAAGTGAA
GAAGCATGCCGTTTGCACTTTAAAGAACAACGCGACAAATTAGGAGTCACTTGTCAAAGGTGTGGTCATGACGCCCACTATTGGATTCAAAGTAGATGGA
GTTATAAATGTAAGAAATGTCGTTCTCGTATGACTTTAAAAAGTGGAACAATAATGGAATATTCTAAGTTATCTTTTCTAATATGGTATAAAACAATGTT
CTTAATGACAGCGACCAAGAAAGGCTTTTCTACTTTAGAAATTCAGAAGCAATTAGGACTAAAAAGATATGAGCCAGTATGGGCAATGGTACATAAACTT
CGCAAGGCAATGGGCAATAGAGATAGCAAATATACTTTAGAAGGAATGTTAGAGATGGATCAGGGGTATTTTAAAGTAGAAACATCTGAAATAGAGAAGT
CTAAAACAAAAAGTGGTCGTGGCTCTACAGGTGTCCAAAATGTTGCAATTATGGCAGAGAGTACAGCTTTAGAGGACATAAAAACTGGTGAAAAACAAAA
TCATGTACGCTTTTTTAAAGCTGTTGTTTTAGAAGATCATAAAGCTGAAGGTGTTAATGAAATGATTAAGAAAAATATTCAAGAAAGTAGTATTGTCTTA
ACTGACAAGAGTACTTCTTATGTAGATATTTCAGATTTTGTTCAGATACATATCACTGAAAAATCATCAGAACAAACAACAAAAGAAACTCTTAAATGGG
TACATATAGCTATCAGTAATGCCAAAAGAAATCTACTGGGAAATTACCATAAAATTAAACGAAAATATCTTCAAGCGTACTTAGATGAATTCGTTTATAA
ACCTTAATAGAAGGTACTTTGGTGATAAGCTCTTTGATAGGCTTATTATTGCCAATATTACTGCTTATGACTAAAAACGGAGATACATA
GAAGCATGCCGTTTGCACTTTAAAGAACAACGCGACAAATTAGGAGTCACTTGTCAAAGGTGTGGTCATGACGCCCACTATTGGATTCAAAGTAGATGGA
GTTATAAATGTAAGAAATGTCGTTCTCGTATGACTTTAAAAAGTGGAACAATAATGGAATATTCTAAGTTATCTTTTCTAATATGGTATAAAACAATGTT
CTTAATGACAGCGACCAAGAAAGGCTTTTCTACTTTAGAAATTCAGAAGCAATTAGGACTAAAAAGATATGAGCCAGTATGGGCAATGGTACATAAACTT
CGCAAGGCAATGGGCAATAGAGATAGCAAATATACTTTAGAAGGAATGTTAGAGATGGATCAGGGGTATTTTAAAGTAGAAACATCTGAAATAGAGAAGT
CTAAAACAAAAAGTGGTCGTGGCTCTACAGGTGTCCAAAATGTTGCAATTATGGCAGAGAGTACAGCTTTAGAGGACATAAAAACTGGTGAAAAACAAAA
TCATGTACGCTTTTTTAAAGCTGTTGTTTTAGAAGATCATAAAGCTGAAGGTGTTAATGAAATGATTAAGAAAAATATTCAAGAAAGTAGTATTGTCTTA
ACTGACAAGAGTACTTCTTATGTAGATATTTCAGATTTTGTTCAGATACATATCACTGAAAAATCATCAGAACAAACAACAAAAGAAACTCTTAAATGGG
TACATATAGCTATCAGTAATGCCAAAAGAAATCTACTGGGAAATTACCATAAAATTAAACGAAAATATCTTCAAGCGTACTTAGATGAATTCGTTTATAA
ACCTTAATAGAAGGTACTTTGGTGATAAGCTCTTTGATAGGCTTATTATTGCCAATATTACTGCTTATGACTAAAAACGGAGATACATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 849 bp | 282 aa | 59 | 907 | + | No |
Chemistry : DDE
ORF sequence :
MANLFTFSAEFTSEEACRLHFKEQRDKLGVTCQRCGHDAHYWIQSRWSYKCKKCRSRMTLKSGTIMEYSKLSFLIWYKTMFLMTATKKGFSTLEIQKQLG
LKRYEPVWAMVHKLRKAMGNRDSKYTLEGMLEMDQGYFKVETSEIEKSKTKSGRGSTGVQNVAIMAESTALEDIKTGEKQNHVRFFKAVVLEDHKAEGVN
EMIKKNIQESSIVLTDKSTSYVDISDFVQIHITEKSSEQTTKETLKWVHIAISNAKRNLLGNYHKIKRKYLQAYLDEFVYKP
LKRYEPVWAMVHKLRKAMGNRDSKYTLEGMLEMDQGYFKVETSEIEKSKTKSGRGSTGVQNVAIMAESTALEDIKTGEKQNHVRFFKAVVLEDHKAEGVN
EMIKKNIQESSIVLTDKSTSYVDISDFVQIHITEKSSEQTTKETLKWVHIAISNAKRNLLGNYHKIKRKYLQAYLDEFVYKP
Blast result :
Comments
ISMod1 is 87% aa similar to ISAlg2.
References
1] ISfinder annotation (2017)
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Huys,G., Walker,B., Young,S., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Ireland,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2013) Direct GenBank submission.
2] Earl,A., Ward,D., Feldgarden,M., Gevers,D., Huys,G., Walker,B., Young,S., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A.M., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Ireland,A., Larimer,J., McCowan,C., Murphy,C., Pearson,M., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B. (2013) Direct GenBank submission.