ISSgsp1

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HE578057 ND Shigella sp.
Citrobacter freundii
Shigella sp. MO17 plasmid pMO17_54
Enterobacter hormaechei subsp. hormaechei
DNA section
IS Length : 2438 bp

Ends


IR Length : 21/22

IRL : GTAAGCGTCCAGCGAGAGCCGTCTGGTCATAATCTGATGTATTCGACAAA
IRR : GTAAGCGTCCAGCGAGAACCGTATTGACGGGGATGCGTTATTCAATTGGC

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGGCGTTGGCCTCAACACGATTTTAC8
TATACATCTGGATGAAAAGGGTATCAGC8
CCAGTACCAGGGGGGATCAGGGCTTGTT8

DNA sequence

GTAAGCGTCCAGCGAGAGCCGTCTGGTCATAATCTGATGTATTCGACAAAGTGGTGTACACCAAATAGTGGTGGGAACCAAAGTGTCAGATATGCAGAAA
AATGTGACTTCCGGCAGGCGTAAAGGCTGCCCTAATTATTCTCCTGAGTTTAAGCAGCAGCTCGTTGCCGCCTCCTGCGAGCCCGGGATATCCATCTCAA
AACTGGCGCTCGAAAATGGCATTAACGCCAATCTGCTATTTAAATGGCGCCAGCAGTGGCGCGAGGGAAAGCTGCTATTACCTTCACCTGAGAGTCCTCA
TTTACTCCCTGTGACTCTCGATGCCACCGCCGTACAGCCAGAACCGCCCGCAGAGGACCCAGAGCTCAGTATCAGCTGTGAGGTAACGTTCCGGCACGGG
ACGCTTCGCCTCAACGGTACTGTCAGCGAAAAGCTCCTGACTCTGCTGATACAGGAACTGAAGCGATGATCCCGTTACCTTCCGGGACCAAAATCTGGCT
GGTTGCCGGCATTACCGACATGCGAAACGGCTTCAATGGTCTGGCCGCAAAGGTGCAGATGGCGCTGAAAGACGATCCGATGTCCGGCCACGTCTTCATC
TTCCGGGGCCGCAGCGGCAGCCAGGTAAAACTGCTGTGGTCTACCGGAGACGGGCTGTGCCTGCTGACCAAAAGACTGGAGCGTGGGCGCTTCGCCTGGC
CGTCAGCCCGTGATGGCAAAGTGTTCCTGACACCGGCACAGCTGGCAATGCTGCTGGAAGGCATCGACTGGCGACAGCCGAAACGGTTGATGACCTCCCT
GACTATGCTGTAGGTCTCTTTATCCTGGTTGTCGCAGAATAAGCCTGGTAAAATGCGGGCTTATGAACGACACCTCTTCTGACGACATCCTTCTGCTGAA
ACAGTGCCTGGCTGAACAGGAAGCGTTGATCCACGCCCTGCAGGAAAAGCTGGCCGACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAACTGGATAAG
CTTCGCCGGATGAACTTCGGTAGCCGTTCCGAAAAGATCTCCCGCCGTATCGCACAGATGGAAGCCGACCTGAACCGGCTTCAGAAAGAGAGCGATACGC
TGACCGGTCGGGTGGATGACCCGGCCGTGCAACGCCCGTTGCGCCAGACCCGTACCCGCAAACCGTTCCCCGAATCACTCCCCCGTGACGAAAAGCGACT
GCTGCCAGCAGAGCCGTGTTGCCCGGACTGTGGCGGTGCGTTGAGCTACCTGGGTGAAGATACCGCTGAACAACTGGAGCTGATGCGCAGCGCCTTCCGG
GTTATCCGGACCGTGCGGGAAAAACATGCCTGTACTCAGTGCGATGCCATCGTGCAGGCCCCCGCGCCTTCACGTCCCATCGAGCGGGGTATCGCCGGAC
CGGGGCTGCTGGCCCGCGTGCTGAGTTCAAAGTATGCAGAACATACCCCGCTGTACCGGCAGTCAGAAATATACAGCCGCCAGGGCGTGGAGCTGAGCCG
CTCACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCACCGCTGGAAGAGGCGCTTCAGGGCTATGTCCTGACCGACGGTAAACTCCATGCC
GATGACACCCCGGTCCAGGTGCTGCTGCCGGGCAATAAGAAGACGAAGACCGGGCGGTTGTGGACGTATGTTCGTGATGACCGCAACGCTGGATCAGCAG
TCGCGCCGGCGGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCACCCTCAGACCCATCTTGCAGGGTTCAGTGGTGTGCTGCAGGCGGATGCGTA
CGCCGGGTTCAACGAGCTGTACCGCGATGGCCAGATAACGGAAGCCGCCTGCTGGGCTCACGCCCGCCGTAAAATCCACGATGTGCACGTCCGCACACCG
TCGGCGCTGACGGATGAAGCCCTGAAGCGTATCGGCGAGCTGTATGCCGTTGAAGCGGAGATAAGGGGAATGCCGGCGGAGCAACGCCTTGCTGAACGTC
AGCAAAAAGCTAAACCACAGTTGAAAGCCCTGGAAAGCTGGCTGCGTGAAAAGATGAAAACGCTGTCGCGACACTCGGAGCTGGCGAAGGCGTTCACGTA
CGCCCTGAACCAGTGGCCGGCACTGACGTACTATGCGGAAGATGGCTGGGCCGAAGCCGATAACAACATCGCTGAAAATGCGCTACGGCTGGTCAGTCTG
GGGCGTAAAAACTGGCTGTTCTTCGGCTCTGACCACGGTGGTGAGCGAGGAGCGCTGCTGTACAGCCTGATCGGGACGTGCAAACTGAATGGCGTGGATC
CAGAAAGCTACCTCCGTCACGTCCTTAACGTCATAGCGGACTGGCCAGTCAACCGGGTCAGCGAACTGCTCCCCTGGCGCGTAGCACTGCCAATTGAATA
ACGCATCCCCGTCAATACGGTTCTCGCTGGACGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
378 bp125 aa92469+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MQKNVTSGRRKGCPNYSPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSPESPHLLPVTLDATAVQPEPPAEDPELSISCEVTF
RHGTLRLNGTVSEKLLTLLIQELKR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
294 bp97 aa520813+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MRNGFNGLAAKVQMALKDDPMSGHVFIFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLLEGIDWRQPKRLMTSLTML

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1539 bp512 aa8632401+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDTSSDDILLLKQCLAEQEALIHALQEKLADREREIDHLQAQLDKLRRMNFGSRSEKISRRIAQMEADLNRLQKESDTLTGRVDDPAVQRPLRQTRTRK
PFPESLPRDEKRLLPAEPCCPDCGGALSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLSSKYAEHTPLYRQ
SEIYSRQGVELSRSLLSGWVDACCRLLSPLEEALQGYVLTDGKLHADDTPVQVLLPGNKKTKTGRLWTYVRDDRNAGSAVAPAVWFAYSPDRKGIHPQTH
LAGFSGVLQADAYAGFNELYRDGQITEAACWAHARRKIHDVHVRTPSALTDEALKRIGELYAVEAEIRGMPAEQRLAERQQKAKPQLKALESWLREKMKT
LSRHSELAKAFTYALNQWPALTYYAEDGWAEADNNIAENALRLVSLGRKNWLFFGSDHGGERGALLYSLIGTCKLNGVDPESYLRHVLNVIADWPVNRVS
ELLPWRVALPIE

 

Blast result :
Comments
ISSgsp1 is 91% (orfA), 98% (orfB) and 96% (orfC) aa similar to ISEc8.
References
1] ISfinder (2017) Direct submission
2] Norman A. (2011) Direct submission to GenBank