ISChpi1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JPRJ01000002 ND Chryseobacterium piperi
Chryseobacterium piperi CTM
DNA section
IS Length : 987 bp

Ends


IR Length : 20/25

IRL : ACGAATATCCGTATTATTGCCTAAATATTTATTATCTCAGTATTCTTCAA
IRR : ATGAATATCCGTTTTTTAACCTAAAGCTGTAATGTTAGCAATGACAAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
ACTCTTAGTAATCTCAAATATTTGAGTTTATAGCTAAAAA0

DNA sequence

ACGAATATCCGTATTATTGCCTAAATATTTATTATCTCAGTATTCTTCAATAAATTACCGATGACTATATTCCATTTCACCGTTCATTTTGGAAGCGAAA
CAGACTGTCGTAATCACTTTAAGGCCCAAAGAAATAAAATAGGAATATCATGCAGGAAGTGTGGTCATAGGGATCATTATTGGAAAAGCGATAAATGGAG
TTACGAATGTAAAGCTTGTCAATACAGAACATCTCTTCGCTGTGGTACCATCATGGAAAACTCAAAACTTGGTTTTTTGATTTGGTATCAGGCGATGCTT
CTCATGAGTTGTACCAAGAAAGGTTTTTCGGCCAAGGAAATCCAGAAGCAACTAGGAATGAAAAGATATGAACCGGTATGGTTGATGGTACAGAAGCTCA
GAAGGGCTATGGGTAATAGGGATTCCCGTTACACCTTGGAAGGAATGATAGAATTTGATGAAGCTTATTTTAGCATTGCCGCTTCAGAGATTGAAAAAGA
AAAAGGTATTCGGGGAAAGGGAGCAATCGGAAAACAGAATGTTGCTGTCATGGCTGAATCTATACCACTGGAAGATATGGAAAACGGGAAGTCTTCTAAA
CATTGCCGTTACTTTAAAGCTATCGTTTTGGACACCCATAAGTCTAATGAGATCAATGATACTATTAGACAATCTTTAAATGAAGAATGTATCGTATTTA
CAGACAAAAGTAAGTCTTATGTAGATATAGCAGACTTTGTCGAACTTCATATTATGGAAAAATCATCAATGCAGACTACCAAAGAAACTTTGAAATGGGT
TCATATAGCCATAAATAATGCTAAAAGAAATCTCTTGGGGAACTATCATAAAATCGAAAGAAAGTATTTACAACTTTATCTTGACGAATTTGTTTACAAG
CTCAATCGAAGATATTTCGGTGAACAACTATTTGATAGGCTTGTCATTGCTAACATTACAGCTTTAGGTTAAAAAACGGATATTCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
912 bp303 aa61972+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTIFHFTVHFGSETDCRNHFKAQRNKIGISCRKCGHRDHYWKSDKWSYECKACQYRTSLRCGTIMENSKLGFLIWYQAMLLMSCTKKGFSAKEIQKQLGM
KRYEPVWLMVQKLRRAMGNRDSRYTLEGMIEFDEAYFSIAASEIEKEKGIRGKGAIGKQNVAVMAESIPLEDMENGKSSKHCRYFKAIVLDTHKSNEIND
TIRQSLNEECIVFTDKSKSYVDIADFVELHIMEKSSMQTTKETLKWVHIAINNAKRNLLGNYHKIERKYLQLYLDEFVYKLNRRYFGEQLFDRLVIANIT
ALG

 

Blast result :
Comments
ISChpi1 is 86% aa similar to ISCgr1.
References
1] ISfinder annotation (2017)
2] Pipes,S.E., Stropko,S.J. and Newman,J.D. (2014) Direct GenBank submission.