ISChpi1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JPRJ01000002 | ND | Chryseobacterium piperi | Chryseobacterium piperi CTM |
DNA section
IS Length : 987 bp
Ends
IR Length : 20/25
IRL : ACGAATATCCGTATTATTGCCTAAATATTTATTATCTCAGTATTCTTCAA
IRR : ATGAATATCCGTTTTTTAACCTAAAGCTGTAATGTTAGCAATGACAAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCTTAGTAATCTCAAATA | TTTGAGTTTATAGCTAAAAA | 0 |
DNA sequence
ACGAATATCCGTATTATTGCCTAAATATTTATTATCTCAGTATTCTTCAATAAATTACCGATGACTATATTCCATTTCACCGTTCATTTTGGAAGCGAAA
CAGACTGTCGTAATCACTTTAAGGCCCAAAGAAATAAAATAGGAATATCATGCAGGAAGTGTGGTCATAGGGATCATTATTGGAAAAGCGATAAATGGAG
TTACGAATGTAAAGCTTGTCAATACAGAACATCTCTTCGCTGTGGTACCATCATGGAAAACTCAAAACTTGGTTTTTTGATTTGGTATCAGGCGATGCTT
CTCATGAGTTGTACCAAGAAAGGTTTTTCGGCCAAGGAAATCCAGAAGCAACTAGGAATGAAAAGATATGAACCGGTATGGTTGATGGTACAGAAGCTCA
GAAGGGCTATGGGTAATAGGGATTCCCGTTACACCTTGGAAGGAATGATAGAATTTGATGAAGCTTATTTTAGCATTGCCGCTTCAGAGATTGAAAAAGA
AAAAGGTATTCGGGGAAAGGGAGCAATCGGAAAACAGAATGTTGCTGTCATGGCTGAATCTATACCACTGGAAGATATGGAAAACGGGAAGTCTTCTAAA
CATTGCCGTTACTTTAAAGCTATCGTTTTGGACACCCATAAGTCTAATGAGATCAATGATACTATTAGACAATCTTTAAATGAAGAATGTATCGTATTTA
CAGACAAAAGTAAGTCTTATGTAGATATAGCAGACTTTGTCGAACTTCATATTATGGAAAAATCATCAATGCAGACTACCAAAGAAACTTTGAAATGGGT
TCATATAGCCATAAATAATGCTAAAAGAAATCTCTTGGGGAACTATCATAAAATCGAAAGAAAGTATTTACAACTTTATCTTGACGAATTTGTTTACAAG
CTCAATCGAAGATATTTCGGTGAACAACTATTTGATAGGCTTGTCATTGCTAACATTACAGCTTTAGGTTAAAAAACGGATATTCAT
CAGACTGTCGTAATCACTTTAAGGCCCAAAGAAATAAAATAGGAATATCATGCAGGAAGTGTGGTCATAGGGATCATTATTGGAAAAGCGATAAATGGAG
TTACGAATGTAAAGCTTGTCAATACAGAACATCTCTTCGCTGTGGTACCATCATGGAAAACTCAAAACTTGGTTTTTTGATTTGGTATCAGGCGATGCTT
CTCATGAGTTGTACCAAGAAAGGTTTTTCGGCCAAGGAAATCCAGAAGCAACTAGGAATGAAAAGATATGAACCGGTATGGTTGATGGTACAGAAGCTCA
GAAGGGCTATGGGTAATAGGGATTCCCGTTACACCTTGGAAGGAATGATAGAATTTGATGAAGCTTATTTTAGCATTGCCGCTTCAGAGATTGAAAAAGA
AAAAGGTATTCGGGGAAAGGGAGCAATCGGAAAACAGAATGTTGCTGTCATGGCTGAATCTATACCACTGGAAGATATGGAAAACGGGAAGTCTTCTAAA
CATTGCCGTTACTTTAAAGCTATCGTTTTGGACACCCATAAGTCTAATGAGATCAATGATACTATTAGACAATCTTTAAATGAAGAATGTATCGTATTTA
CAGACAAAAGTAAGTCTTATGTAGATATAGCAGACTTTGTCGAACTTCATATTATGGAAAAATCATCAATGCAGACTACCAAAGAAACTTTGAAATGGGT
TCATATAGCCATAAATAATGCTAAAAGAAATCTCTTGGGGAACTATCATAAAATCGAAAGAAAGTATTTACAACTTTATCTTGACGAATTTGTTTACAAG
CTCAATCGAAGATATTTCGGTGAACAACTATTTGATAGGCTTGTCATTGCTAACATTACAGCTTTAGGTTAAAAAACGGATATTCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
912 bp | 303 aa | 61 | 972 | + | No |
Chemistry : DDE
ORF sequence :
MTIFHFTVHFGSETDCRNHFKAQRNKIGISCRKCGHRDHYWKSDKWSYECKACQYRTSLRCGTIMENSKLGFLIWYQAMLLMSCTKKGFSAKEIQKQLGM
KRYEPVWLMVQKLRRAMGNRDSRYTLEGMIEFDEAYFSIAASEIEKEKGIRGKGAIGKQNVAVMAESIPLEDMENGKSSKHCRYFKAIVLDTHKSNEIND
TIRQSLNEECIVFTDKSKSYVDIADFVELHIMEKSSMQTTKETLKWVHIAINNAKRNLLGNYHKIERKYLQLYLDEFVYKLNRRYFGEQLFDRLVIANIT
ALG
KRYEPVWLMVQKLRRAMGNRDSRYTLEGMIEFDEAYFSIAASEIEKEKGIRGKGAIGKQNVAVMAESIPLEDMENGKSSKHCRYFKAIVLDTHKSNEIND
TIRQSLNEECIVFTDKSKSYVDIADFVELHIMEKSSMQTTKETLKWVHIAINNAKRNLLGNYHKIERKYLQLYLDEFVYKLNRRYFGEQLFDRLVIANIT
ALG
Blast result :
Comments
ISChpi1 is 86% aa similar to ISCgr1.
References
1] ISfinder annotation (2017)
2] Pipes,S.E., Stropko,S.J. and Newman,J.D. (2014) Direct GenBank submission.
2] Pipes,S.E., Stropko,S.J. and Newman,J.D. (2014) Direct GenBank submission.