ISDor1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP007451 ND Draconibacterium orientale
Draconibacterium orientale FH5T
DNA section
IS Length : 994 bp

Ends


IR Length : 20/23

IRL : TTGAATATCCGTAAATACTCATAATTTGATTTATTTCATTATCTTTAAGG
IRR : TTGAATATCCGTATTTAGTCATAGTCCAGTAATTCCAGCAATAACCAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GACTTCACATCATTAAATCCGAATATAATTTAATCCA9
TAAAGTTTGAAAATAAAAAGTTAACATTATGA8
CACAAACGCATAATTCCTTTTTCTGCTTTGG9
CAAATGCCATACTTACAATAATCGCCGCTG10
GAAAAGAAATACTAATTTTTTCATTTTTTTTA8
ATCCACGACATTATATTTTTTGTCGAAAAGAT8
CCTTTTACTTA TTATCTTT AC TTATCTTT TTACTTCCTTG0
ATTATTCTAAA TTGGATAT AC TTGGATAT TTTACATTTTA0
ATTATATAATA TTAAAGAT ATTAAAGAT TCTTTCGCTTCA0
TGAAATTTAAG AAATATTA AAAATATTA TAATTGGCTGAC0
GCTAATGAATTT ATAAAAATA ATAAAAAT TCCTGTTGCCA0
GCGTTAGTGCGTT ATCTTATA ATCTTAT TTTCTAATTAAA0

DNA sequence

TTGAATATCCGTAAATACTCATAATTTGATTTATTTCATTATCTTTAAGGTAGTTAAAACGATATAGATGAACCTATTTACTTTCACAGCACATTTTGAT
AGCGAGGAAGCTTGCCGAAACCATTTTAAAGAGGAAAGGGACAAGGTAGGTGTAGTCTGCAAGGAATGTGGACATACAGAGCATTACTGGATAAAAAGTC
GCTGGAGTTACGAGTGCAAAAAGTGTAGACACCGTACTTCATTGCGTAGTGGCACTATAATGCAGGGATCAAACCTATCGTTCATGATCTGGTACAAAAC
CATGTTCTTAATGACTGCCACCAAAAAAGGTTTTTCCAGCAAGGAAATCCAAAAGCAACTTGGAATGAAACGCTATGAGCCTGTTTGGGCAATGGTACAC
AAACTTCGTAAAGCCATGGGTAACCGCGATGCGCGTTATACCTTGGAGGGGATGATTGAAATGGACGAGGGATATTTTACAGTAGAATCTTCTGAAGTGG
AAAAGTCGAGAGGGAAAAGAGGACGTGGTGCTGCAGGCAAGTCGCCGGTATCAGTAATGGCAGAGTCGGCTCAGCTTGAAGATGTAGAGACCGGGGAAAA
AACAAGTCAATGCCGTTACTTCAAAGCCAGGGTTCTTGAGAGTCACCATGCAGATGAAATTAATGATACGGTCAGGGAATCTTTTGATGAAAAAAGTATT
GTATTTACCGACGACAGTACGTCTTATGTTGATATTTCGGATTATGTGGAACTTCATTTTTCTGAAAAGTCAAGCGAAAAGCTCACCAAAGAAACATTGC
GTTGGGTTCATATTACAATAAGCAATGCTAAACGAAACTTCCTTGGTAATTACCACAAGATTAAGGGGAAATACCTTCAAATGTATTTGAATGAGTTCGT
CTACAAGCTAAACCGGAGGTATTTTGGAGAAAAACTCTTTGACAGGCTGGTTATTGCTGGAATTACTGGACTATGACTAAATACGGATATTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
909 bp302 aa68976+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLFTFTAHFDSEEACRNHFKEERDKVGVVCKECGHTEHYWIKSRWSYECKKCRHRTSLRSGTIMQGSNLSFMIWYKTMFLMTATKKGFSSKEIQKQLGM
KRYEPVWAMVHKLRKAMGNRDARYTLEGMIEMDEGYFTVESSEVEKSRGKRGRGAAGKSPVSVMAESAQLEDVETGEKTSQCRYFKARVLESHHADEIND
TVRESFDEKSIVFTDDSTSYVDISDYVELHFSEKSSEKLTKETLRWVHITISNAKRNFLGNYHKIKGKYLQMYLNEFVYKLNRRYFGEKLFDRLVIAGIT
GL

 

Blast result :
Comments
ISDor1 is 90% aa similar to ISFba1.
References
1] ISfinder annotation (2017)
2] Li,X., Wang,X., Xie,Z., Du,Z. and Chen,G. (2014) Direct GenBank submission.