ISDor1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP007451 | ND | Draconibacterium orientale | Draconibacterium orientale FH5T |
DNA section
IS Length : 994 bp
Ends
IR Length : 20/23
IRL : TTGAATATCCGTAAATACTCATAATTTGATTTATTTCATTATCTTTAAGG
IRR : TTGAATATCCGTATTTAGTCATAGTCCAGTAATTCCAGCAATAACCAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACTTCACATCATT | AAATCCGAA | TATAATTTAATCCA | 9 |
TAAAGTTTGAAA | ATAAAAAG | TTAACATTATGA | 8 |
CACAAACGCAT | AATTCCTTT | TTCTGCTTTGG | 9 |
CAAATGCCAT | ACTTACAATA | ATCGCCGCTG | 10 |
GAAAAGAAATAC | TAATTTTT | TCATTTTTTTTA | 8 |
ATCCACGACATT | ATATTTTT | TGTCGAAAAGAT | 8 |
CCTTTTACTTA TTATCTTT A | C TTATCTTT TTACTTCCTTG | 0 | |
ATTATTCTAAA TTGGATAT A | C TTGGATAT TTTACATTTTA | 0 | |
ATTATATAATA TTAAAGAT A | TTAAAGAT TCTTTCGCTTCA | 0 | |
TGAAATTTAAG AAATATTA A | AAATATTA TAATTGGCTGAC | 0 | |
GCTAATGAATTT ATAAAAAT | A ATAAAAAT TCCTGTTGCCA | 0 | |
GCGTTAGTGCGTT ATCTTAT | A ATCTTAT TTTCTAATTAAA | 0 |
DNA sequence
TTGAATATCCGTAAATACTCATAATTTGATTTATTTCATTATCTTTAAGGTAGTTAAAACGATATAGATGAACCTATTTACTTTCACAGCACATTTTGAT
AGCGAGGAAGCTTGCCGAAACCATTTTAAAGAGGAAAGGGACAAGGTAGGTGTAGTCTGCAAGGAATGTGGACATACAGAGCATTACTGGATAAAAAGTC
GCTGGAGTTACGAGTGCAAAAAGTGTAGACACCGTACTTCATTGCGTAGTGGCACTATAATGCAGGGATCAAACCTATCGTTCATGATCTGGTACAAAAC
CATGTTCTTAATGACTGCCACCAAAAAAGGTTTTTCCAGCAAGGAAATCCAAAAGCAACTTGGAATGAAACGCTATGAGCCTGTTTGGGCAATGGTACAC
AAACTTCGTAAAGCCATGGGTAACCGCGATGCGCGTTATACCTTGGAGGGGATGATTGAAATGGACGAGGGATATTTTACAGTAGAATCTTCTGAAGTGG
AAAAGTCGAGAGGGAAAAGAGGACGTGGTGCTGCAGGCAAGTCGCCGGTATCAGTAATGGCAGAGTCGGCTCAGCTTGAAGATGTAGAGACCGGGGAAAA
AACAAGTCAATGCCGTTACTTCAAAGCCAGGGTTCTTGAGAGTCACCATGCAGATGAAATTAATGATACGGTCAGGGAATCTTTTGATGAAAAAAGTATT
GTATTTACCGACGACAGTACGTCTTATGTTGATATTTCGGATTATGTGGAACTTCATTTTTCTGAAAAGTCAAGCGAAAAGCTCACCAAAGAAACATTGC
GTTGGGTTCATATTACAATAAGCAATGCTAAACGAAACTTCCTTGGTAATTACCACAAGATTAAGGGGAAATACCTTCAAATGTATTTGAATGAGTTCGT
CTACAAGCTAAACCGGAGGTATTTTGGAGAAAAACTCTTTGACAGGCTGGTTATTGCTGGAATTACTGGACTATGACTAAATACGGATATTCAA
AGCGAGGAAGCTTGCCGAAACCATTTTAAAGAGGAAAGGGACAAGGTAGGTGTAGTCTGCAAGGAATGTGGACATACAGAGCATTACTGGATAAAAAGTC
GCTGGAGTTACGAGTGCAAAAAGTGTAGACACCGTACTTCATTGCGTAGTGGCACTATAATGCAGGGATCAAACCTATCGTTCATGATCTGGTACAAAAC
CATGTTCTTAATGACTGCCACCAAAAAAGGTTTTTCCAGCAAGGAAATCCAAAAGCAACTTGGAATGAAACGCTATGAGCCTGTTTGGGCAATGGTACAC
AAACTTCGTAAAGCCATGGGTAACCGCGATGCGCGTTATACCTTGGAGGGGATGATTGAAATGGACGAGGGATATTTTACAGTAGAATCTTCTGAAGTGG
AAAAGTCGAGAGGGAAAAGAGGACGTGGTGCTGCAGGCAAGTCGCCGGTATCAGTAATGGCAGAGTCGGCTCAGCTTGAAGATGTAGAGACCGGGGAAAA
AACAAGTCAATGCCGTTACTTCAAAGCCAGGGTTCTTGAGAGTCACCATGCAGATGAAATTAATGATACGGTCAGGGAATCTTTTGATGAAAAAAGTATT
GTATTTACCGACGACAGTACGTCTTATGTTGATATTTCGGATTATGTGGAACTTCATTTTTCTGAAAAGTCAAGCGAAAAGCTCACCAAAGAAACATTGC
GTTGGGTTCATATTACAATAAGCAATGCTAAACGAAACTTCCTTGGTAATTACCACAAGATTAAGGGGAAATACCTTCAAATGTATTTGAATGAGTTCGT
CTACAAGCTAAACCGGAGGTATTTTGGAGAAAAACTCTTTGACAGGCTGGTTATTGCTGGAATTACTGGACTATGACTAAATACGGATATTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
909 bp | 302 aa | 68 | 976 | + | No |
Chemistry : DDE
ORF sequence :
MNLFTFTAHFDSEEACRNHFKEERDKVGVVCKECGHTEHYWIKSRWSYECKKCRHRTSLRSGTIMQGSNLSFMIWYKTMFLMTATKKGFSSKEIQKQLGM
KRYEPVWAMVHKLRKAMGNRDARYTLEGMIEMDEGYFTVESSEVEKSRGKRGRGAAGKSPVSVMAESAQLEDVETGEKTSQCRYFKARVLESHHADEIND
TVRESFDEKSIVFTDDSTSYVDISDYVELHFSEKSSEKLTKETLRWVHITISNAKRNFLGNYHKIKGKYLQMYLNEFVYKLNRRYFGEKLFDRLVIAGIT
GL
KRYEPVWAMVHKLRKAMGNRDARYTLEGMIEMDEGYFTVESSEVEKSRGKRGRGAAGKSPVSVMAESAQLEDVETGEKTSQCRYFKARVLESHHADEIND
TVRESFDEKSIVFTDDSTSYVDISDYVELHFSEKSSEKLTKETLRWVHITISNAKRNFLGNYHKIKGKYLQMYLNEFVYKLNRRYFGEKLFDRLVIAGIT
GL
Blast result :
Comments
ISDor1 is 90% aa similar to ISFba1.
References
1] ISfinder annotation (2017)
2] Li,X., Wang,X., Xie,Z., Du,Z. and Chen,G. (2014) Direct GenBank submission.
2] Li,X., Wang,X., Xie,Z., Du,Z. and Chen,G. (2014) Direct GenBank submission.