ISCgr1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LMAI01000001 | ND | Chryseobacterium greenlandense | Chryseobacterium greenlandense UMB34 |
DNA section
IS Length : 982 bp
Ends
IR Length : 17/23
IRL : ATGAATATCCGTAATTACGAATAATTCACTATATTTATTTGTAATTTAAT
IRR : ATGTATATCCGTTTTTCCTCATACCGCTGTAATATTAGCAATAATGAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTATCAAAATAA | ATGCTTTT | TACGACAAAA | 8 |
DNA sequence
ATGAATATCCGTAATTACGAATAATTCACTATATTTATTTGTAATTTAATTAGTTATGATGGATATATTCAGTTTTACAGCTCATTTTGGGACAGAGGAA
GATTGCAGAATTCATTTTAAGGCTCAAAGAGATGAAATAGGTGTGGTTTGTAAATGCGGTCACAAGGAACATTTTTGGATTAAAAGCATCTGGAGCTATG
AGTGCAAAAAATGTCGTAGCAGAACCTCTTTGAAAAGCGGAACAATCATGCAAAACTCTAATCTTTCATTTTTAATCTGGTACAAGATCATGTTTTTGAT
GAGCGTTACCAAGAAAGGATTTTCGTCCAAGGAGATTCAGAAACAATTGGGTTTAAAACGCTATGAGCCAGTTTGGGCTATGGTTCACAAATTAAGAAAA
GCAATGGGAACGCGTGACGAAAGATACACTCTGGAAGGAATGATTGAGTTTGATGAAGGATATTTTACGGTAGAATCTAGTGAAATCGAGCAAGAAAAAG
GAGTACGAGGCAGAGGTGCGGCAGGGAAACAAAACGTTGCTGTGATGGCTGAATCTACTCCACTAGAAAATATTGAAACGGGGGAAAAATCTAAATCCTG
CAGATATTTCAAAGCTAAAGTTTTAGAAACGCATCTTTCTTTGGAAATCAATGAGACTATCAAAGAATCTATCGATAACCAAAGCATTGTTTTTACTGAT
AAAAGTACTTCTTATGTAGATATTTCTGATTTTGTAGAGCTTCATATCACAGAAAAATCAGACAAAGAAACTACAAATGAAACTTTAAAATGGGTTCATA
TAACAATCAGTAATGCAAAACGAAACTTATTGGGAAATTATCATAAAATCAAAAGAAAGTATCTTCAATTATATCTAAACGAGTTCGTCTATAAACTAAA
CAGAAGATATTTTGGAGATAAACTCTTCGAAAGGCTCATTATTGCTAATATTACAGCGGTATGAGGAAAAACGGATATACAT
GATTGCAGAATTCATTTTAAGGCTCAAAGAGATGAAATAGGTGTGGTTTGTAAATGCGGTCACAAGGAACATTTTTGGATTAAAAGCATCTGGAGCTATG
AGTGCAAAAAATGTCGTAGCAGAACCTCTTTGAAAAGCGGAACAATCATGCAAAACTCTAATCTTTCATTTTTAATCTGGTACAAGATCATGTTTTTGAT
GAGCGTTACCAAGAAAGGATTTTCGTCCAAGGAGATTCAGAAACAATTGGGTTTAAAACGCTATGAGCCAGTTTGGGCTATGGTTCACAAATTAAGAAAA
GCAATGGGAACGCGTGACGAAAGATACACTCTGGAAGGAATGATTGAGTTTGATGAAGGATATTTTACGGTAGAATCTAGTGAAATCGAGCAAGAAAAAG
GAGTACGAGGCAGAGGTGCGGCAGGGAAACAAAACGTTGCTGTGATGGCTGAATCTACTCCACTAGAAAATATTGAAACGGGGGAAAAATCTAAATCCTG
CAGATATTTCAAAGCTAAAGTTTTAGAAACGCATCTTTCTTTGGAAATCAATGAGACTATCAAAGAATCTATCGATAACCAAAGCATTGTTTTTACTGAT
AAAAGTACTTCTTATGTAGATATTTCTGATTTTGTAGAGCTTCATATCACAGAAAAATCAGACAAAGAAACTACAAATGAAACTTTAAAATGGGTTCATA
TAACAATCAGTAATGCAAAACGAAACTTATTGGGAAATTATCATAAAATCAAAAGAAAGTATCTTCAATTATATCTAAACGAGTTCGTCTATAAACTAAA
CAGAAGATATTTTGGAGATAAACTCTTCGAAAGGCTCATTATTGCTAATATTACAGCGGTATGAGGAAAAACGGATATACAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 59 | 964 | + | No |
Chemistry : DDE
ORF sequence :
MDIFSFTAHFGTEEDCRIHFKAQRDEIGVVCKCGHKEHFWIKSIWSYECKKCRSRTSLKSGTIMQNSNLSFLIWYKIMFLMSVTKKGFSSKEIQKQLGLK
RYEPVWAMVHKLRKAMGTRDERYTLEGMIEFDEGYFTVESSEIEQEKGVRGRGAAGKQNVAVMAESTPLENIETGEKSKSCRYFKAKVLETHLSLEINET
IKESIDNQSIVFTDKSTSYVDISDFVELHITEKSDKETTNETLKWVHITISNAKRNLLGNYHKIKRKYLQLYLNEFVYKLNRRYFGDKLFERLIIANITA
V
RYEPVWAMVHKLRKAMGTRDERYTLEGMIEFDEGYFTVESSEIEQEKGVRGRGAAGKQNVAVMAESTPLENIETGEKSKSCRYFKAKVLETHLSLEINET
IKESIDNQSIVFTDKSTSYVDISDFVELHITEKSDKETTNETLKWVHITISNAKRNLLGNYHKIKRKYLQLYLNEFVYKLNRRYFGDKLFERLIIANITA
V
Blast result :
Comments
ISCgr1 is 91% aa similar to ISFba1.
References
1] ISfinder annotation (2017)
2] Newman,J., Fischer,K. and Miller,J. (2015) Direct GenBank submission.
2] Newman,J., Fischer,K. and Miller,J. (2015) Direct GenBank submission.