ISCgr1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LMAI01000001 ND Chryseobacterium greenlandense
Chryseobacterium greenlandense UMB34
DNA section
IS Length : 982 bp

Ends


IR Length : 17/23

IRL : ATGAATATCCGTAATTACGAATAATTCACTATATTTATTTGTAATTTAAT
IRR : ATGTATATCCGTTTTTCCTCATACCGCTGTAATATTAGCAATAATGAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTATCAAAATAAATGCTTTTTACGACAAAA8

DNA sequence

ATGAATATCCGTAATTACGAATAATTCACTATATTTATTTGTAATTTAATTAGTTATGATGGATATATTCAGTTTTACAGCTCATTTTGGGACAGAGGAA
GATTGCAGAATTCATTTTAAGGCTCAAAGAGATGAAATAGGTGTGGTTTGTAAATGCGGTCACAAGGAACATTTTTGGATTAAAAGCATCTGGAGCTATG
AGTGCAAAAAATGTCGTAGCAGAACCTCTTTGAAAAGCGGAACAATCATGCAAAACTCTAATCTTTCATTTTTAATCTGGTACAAGATCATGTTTTTGAT
GAGCGTTACCAAGAAAGGATTTTCGTCCAAGGAGATTCAGAAACAATTGGGTTTAAAACGCTATGAGCCAGTTTGGGCTATGGTTCACAAATTAAGAAAA
GCAATGGGAACGCGTGACGAAAGATACACTCTGGAAGGAATGATTGAGTTTGATGAAGGATATTTTACGGTAGAATCTAGTGAAATCGAGCAAGAAAAAG
GAGTACGAGGCAGAGGTGCGGCAGGGAAACAAAACGTTGCTGTGATGGCTGAATCTACTCCACTAGAAAATATTGAAACGGGGGAAAAATCTAAATCCTG
CAGATATTTCAAAGCTAAAGTTTTAGAAACGCATCTTTCTTTGGAAATCAATGAGACTATCAAAGAATCTATCGATAACCAAAGCATTGTTTTTACTGAT
AAAAGTACTTCTTATGTAGATATTTCTGATTTTGTAGAGCTTCATATCACAGAAAAATCAGACAAAGAAACTACAAATGAAACTTTAAAATGGGTTCATA
TAACAATCAGTAATGCAAAACGAAACTTATTGGGAAATTATCATAAAATCAAAAGAAAGTATCTTCAATTATATCTAAACGAGTTCGTCTATAAACTAAA
CAGAAGATATTTTGGAGATAAACTCTTCGAAAGGCTCATTATTGCTAATATTACAGCGGTATGAGGAAAAACGGATATACAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
906 bp301 aa59964+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIFSFTAHFGTEEDCRIHFKAQRDEIGVVCKCGHKEHFWIKSIWSYECKKCRSRTSLKSGTIMQNSNLSFLIWYKIMFLMSVTKKGFSSKEIQKQLGLK
RYEPVWAMVHKLRKAMGTRDERYTLEGMIEFDEGYFTVESSEIEQEKGVRGRGAAGKQNVAVMAESTPLENIETGEKSKSCRYFKAKVLETHLSLEINET
IKESIDNQSIVFTDKSTSYVDISDFVELHITEKSDKETTNETLKWVHITISNAKRNLLGNYHKIKRKYLQLYLNEFVYKLNRRYFGDKLFERLIIANITA
V

 

Blast result :
Comments
ISCgr1 is 91% aa similar to ISFba1.
References
1] ISfinder annotation (2017)
2] Newman,J., Fischer,K. and Miller,J. (2015) Direct GenBank submission.