ISBuba1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP015403 | ND | Burkholderiales bacterium | Burkholderiales bacterium YL45 |
DNA section
IS Length : 1160 bp
Ends
IR Length : 25
IRL : GGCTCTGTTCAGAGTAAGTATTGATATTAGTTGTCGCGCCTCCATTTAAG
IRR : GGCTCTGTTCAGAGTAAGTATTGATCTTTGAGTAACGGCAATGGATCCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCGCTCCGGCTT | TTACGGAA | AAGACCGATG | 8 |
AGGTCATCGACGA | TTTTATTA | AAGACTCTTT | 8 |
DNA sequence
GGCTCTGTTCAGAGTAAGTATTGATATTAGTTGTCGCGCCTCCATTTAAGGGGTATTTTTAAGTTAAGGAGGTACCCTATGTTTACCACAGCAGTAGATA
AGCTCCTTTCGCAGTTTTTTGCCTTAAGCGCTGAAGAAAGATCTTGCATTCTGGAAGTTCTCGTTGATAGCCAACCCATTAACAACTCCGATGGAGTCGA
AAGCTTTCTAAGCAAGAGGCTCGATGTCAGCCGGTCAGGTCGGCCCGCCTGTCCGCACTGCAGCTCATTAAAAGTTGTAAAAAACGGCAGACACTGTGGG
ACTCAACGCTTTATATGTCGAGATTGCAGCAAAAGCTTTGGTTGGAGCAGCGGGTCCTTTTTCAACCATTGCAAGAAAGAAATTTCTCAATGGTTCAAAT
ACGTCCAGTGCTTCATGGACCGGCTTCCTCTCAGAGAGTGCGCACGAAGGTGCGGAATTTCCTTGGATACCTCTTTCAAGTGGCGCCATCGGCTGCTAGA
CGGCTTACAAAAGATACACAACTCGGTAAAACTGACAGGCGTCGTCGAAGCTGACGAGGTCTACTTTTCGATCAGCTACAAAGGATCAAGAAAATTTTCG
GCTCAGCCCGCCGGCAGAGAACCGAAAAAAAGAGGAATGCGTTCCACGAAAAGAGGCCTGTCTGATGAGAAAGTTTGCGTGCCGACAGCCGTAAACCTAG
AGGGAAAGAGCACAGGCGTGGTTTGCAATCTTGGGAAACCCACAACCGCGAATCTCAAAACTGCTTTAGGGTGCAAGATTCTTCCCGGTTCCACTCTTGT
AACGGACAGTCTTGGAGGTTACCCCTTGCTAGCCGAATCTTGCAAGGCTAAACATGTTCAAATTCCGTCAAAGAAACACAAGAAAGGAATCTTCAATATC
CAGCTGATTAATTATTACCACTCCGCCCTCAAGGCAATGACAAATATCCGGTTTAGAGGGGTTGCCACTAAGTATCTCAACAACTACATCGTTTACAACA
ACTTTGTGACCTTTGCCAAAGAGAGTTTCATGGAAAAAATTAAGATCCTGAAGAATGAAATTTTTACTATCGGAGTTGAGGAAAGAAGTTTTTCGGTAAA
TATCTCTAAACGGGATCCATTGCCGTTACTCAAAGATCAATACTTACTCTGAACAGAGCC
AGCTCCTTTCGCAGTTTTTTGCCTTAAGCGCTGAAGAAAGATCTTGCATTCTGGAAGTTCTCGTTGATAGCCAACCCATTAACAACTCCGATGGAGTCGA
AAGCTTTCTAAGCAAGAGGCTCGATGTCAGCCGGTCAGGTCGGCCCGCCTGTCCGCACTGCAGCTCATTAAAAGTTGTAAAAAACGGCAGACACTGTGGG
ACTCAACGCTTTATATGTCGAGATTGCAGCAAAAGCTTTGGTTGGAGCAGCGGGTCCTTTTTCAACCATTGCAAGAAAGAAATTTCTCAATGGTTCAAAT
ACGTCCAGTGCTTCATGGACCGGCTTCCTCTCAGAGAGTGCGCACGAAGGTGCGGAATTTCCTTGGATACCTCTTTCAAGTGGCGCCATCGGCTGCTAGA
CGGCTTACAAAAGATACACAACTCGGTAAAACTGACAGGCGTCGTCGAAGCTGACGAGGTCTACTTTTCGATCAGCTACAAAGGATCAAGAAAATTTTCG
GCTCAGCCCGCCGGCAGAGAACCGAAAAAAAGAGGAATGCGTTCCACGAAAAGAGGCCTGTCTGATGAGAAAGTTTGCGTGCCGACAGCCGTAAACCTAG
AGGGAAAGAGCACAGGCGTGGTTTGCAATCTTGGGAAACCCACAACCGCGAATCTCAAAACTGCTTTAGGGTGCAAGATTCTTCCCGGTTCCACTCTTGT
AACGGACAGTCTTGGAGGTTACCCCTTGCTAGCCGAATCTTGCAAGGCTAAACATGTTCAAATTCCGTCAAAGAAACACAAGAAAGGAATCTTCAATATC
CAGCTGATTAATTATTACCACTCCGCCCTCAAGGCAATGACAAATATCCGGTTTAGAGGGGTTGCCACTAAGTATCTCAACAACTACATCGTTTACAACA
ACTTTGTGACCTTTGCCAAAGAGAGTTTCATGGAAAAAATTAAGATCCTGAAGAATGAAATTTTTACTATCGGAGTTGAGGAAAGAAGTTTTTCGGTAAA
TATCTCTAAACGGGATCCATTGCCGTTACTCAAAGATCAATACTTACTCTGAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1075 bp | 357 aa | 79 | 1153 | + | No |
Chemistry : DDE
ORF sequence :
MFTTAVDKLLSQFFALSAEERSCILEVLVDSQPINNSDGVESFLSKRLDVSRSGRPACPHCSSLKVVKNGRHCGTQRFICRDCSKSFGWSSGSFFNHCKK
EISQWFKYVQCFMDRLPLRECARRCGISLDTSFKWRHRLLDGLQKIHNSVKLTGVVEADEVYFSISYKGSRKFSAQPAGREPKKRGMRSTKRGLSDEKVC
VPTAVNLEGKSTGVVCNLGKPTTANLKTALGCKILPGSTLVTDSLGGYPLLAESCKAKHVQIPSKKHKKGIFNIQLINYYHSALKAMTNIRFRGVATKYL
NNYIVYNNFVTFAKESFMEKIKILKNEIFTIGVEERSFSVNISKRDPLPLLKDQYLL
EISQWFKYVQCFMDRLPLRECARRCGISLDTSFKWRHRLLDGLQKIHNSVKLTGVVEADEVYFSISYKGSRKFSAQPAGREPKKRGMRSTKRGLSDEKVC
VPTAVNLEGKSTGVVCNLGKPTTANLKTALGCKILPGSTLVTDSLGGYPLLAESCKAKHVQIPSKKHKKGIFNIQLINYYHSALKAMTNIRFRGVATKYL
NNYIVYNNFVTFAKESFMEKIKILKNEIFTIGVEERSFSVNISKRDPLPLLKDQYLL
Blast result :
Comments
ISBuba1 is 63% aa similar to ISCaje5.
References
1] ISfinder annotation (2017)
2] Uchimura,Y., Wyss,M., Brugiroux,S., Limenitakis,J.P., Stecher,B., McCoy,K.D. and Macpherson,A.J. (2016) Direct GenBank submission.
2] Uchimura,Y., Wyss,M., Brugiroux,S., Limenitakis,J.P., Stecher,B., McCoy,K.D. and Macpherson,A.J. (2016) Direct GenBank submission.