ISBuba1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP015403 ND Burkholderiales bacterium
Burkholderiales bacterium YL45
DNA section
IS Length : 1160 bp

Ends


IR Length : 25

IRL : GGCTCTGTTCAGAGTAAGTATTGATATTAGTTGTCGCGCCTCCATTTAAG
IRR : GGCTCTGTTCAGAGTAAGTATTGATCTTTGAGTAACGGCAATGGATCCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GCCGCTCCGGCTTTTACGGAAAAGACCGATG8
AGGTCATCGACGATTTTATTAAAGACTCTTT8

DNA sequence

GGCTCTGTTCAGAGTAAGTATTGATATTAGTTGTCGCGCCTCCATTTAAGGGGTATTTTTAAGTTAAGGAGGTACCCTATGTTTACCACAGCAGTAGATA
AGCTCCTTTCGCAGTTTTTTGCCTTAAGCGCTGAAGAAAGATCTTGCATTCTGGAAGTTCTCGTTGATAGCCAACCCATTAACAACTCCGATGGAGTCGA
AAGCTTTCTAAGCAAGAGGCTCGATGTCAGCCGGTCAGGTCGGCCCGCCTGTCCGCACTGCAGCTCATTAAAAGTTGTAAAAAACGGCAGACACTGTGGG
ACTCAACGCTTTATATGTCGAGATTGCAGCAAAAGCTTTGGTTGGAGCAGCGGGTCCTTTTTCAACCATTGCAAGAAAGAAATTTCTCAATGGTTCAAAT
ACGTCCAGTGCTTCATGGACCGGCTTCCTCTCAGAGAGTGCGCACGAAGGTGCGGAATTTCCTTGGATACCTCTTTCAAGTGGCGCCATCGGCTGCTAGA
CGGCTTACAAAAGATACACAACTCGGTAAAACTGACAGGCGTCGTCGAAGCTGACGAGGTCTACTTTTCGATCAGCTACAAAGGATCAAGAAAATTTTCG
GCTCAGCCCGCCGGCAGAGAACCGAAAAAAAGAGGAATGCGTTCCACGAAAAGAGGCCTGTCTGATGAGAAAGTTTGCGTGCCGACAGCCGTAAACCTAG
AGGGAAAGAGCACAGGCGTGGTTTGCAATCTTGGGAAACCCACAACCGCGAATCTCAAAACTGCTTTAGGGTGCAAGATTCTTCCCGGTTCCACTCTTGT
AACGGACAGTCTTGGAGGTTACCCCTTGCTAGCCGAATCTTGCAAGGCTAAACATGTTCAAATTCCGTCAAAGAAACACAAGAAAGGAATCTTCAATATC
CAGCTGATTAATTATTACCACTCCGCCCTCAAGGCAATGACAAATATCCGGTTTAGAGGGGTTGCCACTAAGTATCTCAACAACTACATCGTTTACAACA
ACTTTGTGACCTTTGCCAAAGAGAGTTTCATGGAAAAAATTAAGATCCTGAAGAATGAAATTTTTACTATCGGAGTTGAGGAAAGAAGTTTTTCGGTAAA
TATCTCTAAACGGGATCCATTGCCGTTACTCAAAGATCAATACTTACTCTGAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1075 bp357 aa791153+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFTTAVDKLLSQFFALSAEERSCILEVLVDSQPINNSDGVESFLSKRLDVSRSGRPACPHCSSLKVVKNGRHCGTQRFICRDCSKSFGWSSGSFFNHCKK
EISQWFKYVQCFMDRLPLRECARRCGISLDTSFKWRHRLLDGLQKIHNSVKLTGVVEADEVYFSISYKGSRKFSAQPAGREPKKRGMRSTKRGLSDEKVC
VPTAVNLEGKSTGVVCNLGKPTTANLKTALGCKILPGSTLVTDSLGGYPLLAESCKAKHVQIPSKKHKKGIFNIQLINYYHSALKAMTNIRFRGVATKYL
NNYIVYNNFVTFAKESFMEKIKILKNEIFTIGVEERSFSVNISKRDPLPLLKDQYLL

 

Blast result :
Comments
ISBuba1 is 63% aa similar to ISCaje5.
References
1] ISfinder annotation (2017)
2] Uchimura,Y., Wyss,M., Brugiroux,S., Limenitakis,J.P., Stecher,B., McCoy,K.D. and Macpherson,A.J. (2016) Direct GenBank submission.