ISCldi1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CYZX01000002 | ND | Clostridium disporicum | Clostridium disporicum 2789STDY5834856 |
DNA section
IS Length : 1689 bp
Ends
IR Length : 24/26
IRL : GGCTCTGTTTTAAATAGTGGTTGATATGTGATACTTTTTTAAAATTTGTT
IRR : GGCTCTGTTTTAAATAAAGGTTGATAATAGAAAATGCAGAAGCGGACATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAATAGTTT | TATTTAAA | TTAGGTAGAT | 8 |
DNA sequence
GGCTCTGTTTTAAATAGTGGTTGATATGTGATACTTTTTTAAAATTTGTTTATAATATAAATATAATCAATTTTTGGAGGTATCACTATGAATAATGTAA
CATCAGTATTAGCACAAGCAAAAGCCTTGTCAGAACAAGAGCAACAAGAATTAATAACTCAATTAGAAGAATATCTTATTTTAGGTTCTCAAGTTGCCAA
AATAACTAAAGAAGTTAAAGAAATGAGATTTTCTAAAGGTAGAGTTTGTTGCCATTGTAACGGTACCGATGTGGTTAGAAATGGAAAAAGAAATGGTGTA
CAAAGATATTTATGTAGAAATTGCAAAAAATCATTTTCCGACTTAACTAATTCTGCTACTTACAGAAGCAAAAAGACTTTAGACAAGTGGCTTAAATACG
CTAAATGTATGTTAAGTGGTTACTCTATAAGAAAATCAGCAGAAGAAGTAGAAATTAATATAGCAACTTCTTTTTACTGGCGACATAAGATACTTAACTG
CATTAGTGAATTTCTTGGTGTAGGCTCTGTTGATGGTGTAGTTGAAGCAGATGAAGTTTTCTTTGCTTATTCTTATAAGGGAACTAAACCAGCCAATATG
CCAAGACCTTCCCGTAAGAGAGGGAAACAAGTCAAGAAAAGAGGTATTAGTAAAGAGCAAGTGTGTGTGGGGACTGCTCTTGATAGACAAGGAAATATGA
TAATGGAATTATTATGTACTGGTAGAGTTACTGCTAATGAATTGGAACGTCTATATAGTAATCGTATAGGGGAAGATTCTATTTTATGCACTGACTCTCA
TAAATCATACATTCAATTTGCTACAGATATGCAATTAGAACATAAGAGAATTAAAAGGGGTAGACATAAAGAGGATATATACCATATAAATCACATAAAT
AGCCTACATTCTAATTTGAAGAGATGGATGTCCAGATTCAATGGTGTGGCTACAAAATACCTTGAAAACTATTTGAAGTGGCACAAATGGATAAATACAT
TCAGCACAGAAAAAGATACCATTAGAATTAAAAATTTGATAATTCATAGTAATATAGCACATAGTTACACTATGGTGAAGGAATTTAAGAATAGAAAACC
AATATTTGTTTAAAGAGTATTTTATTTCAATAAATACTGGAATTATAATCTATAAATTATGTATAATACTACTATAAAGTTAAAAAGAAAAGTATTTAAT
ACGGAGGTGAATAAATTATGAAAAAAATAATATCAGTCTTTGCTTTATTTACTATTGTGTTTGCATTAGTTTCATGTACAAAAGAAAAACCATCTGAATA
TACTCCAAATAAAGCACAATTAATTACAGTGGAAAACGCAGAAAATATATATAATCAATTGCCAGAGGAAATAAAAAAAGAAATAGATTTTGATTACGAA
AATATAAATATTGATAAAGTTGTACTTAAAGAAGAAATGGGAAATATATTAGATAAAACATATATAAATAAAGAAGTTTTAAGGCTTAATTTTATTATTA
GGAATAAAAATATACAACCTAATAATAGAATTGCTTTTGCAACAATTGAGGATTTTAAATATATTGGAGATGGATATGTAGATTAATAAGAAATCTAAAC
ATTAAATCATTGATATTTATTGCAAAAGAGCGGACATAAAATGTCCGCTTCTGCATTTTCTATTATCAACCTTTATTTAAAACAGAGCC
CATCAGTATTAGCACAAGCAAAAGCCTTGTCAGAACAAGAGCAACAAGAATTAATAACTCAATTAGAAGAATATCTTATTTTAGGTTCTCAAGTTGCCAA
AATAACTAAAGAAGTTAAAGAAATGAGATTTTCTAAAGGTAGAGTTTGTTGCCATTGTAACGGTACCGATGTGGTTAGAAATGGAAAAAGAAATGGTGTA
CAAAGATATTTATGTAGAAATTGCAAAAAATCATTTTCCGACTTAACTAATTCTGCTACTTACAGAAGCAAAAAGACTTTAGACAAGTGGCTTAAATACG
CTAAATGTATGTTAAGTGGTTACTCTATAAGAAAATCAGCAGAAGAAGTAGAAATTAATATAGCAACTTCTTTTTACTGGCGACATAAGATACTTAACTG
CATTAGTGAATTTCTTGGTGTAGGCTCTGTTGATGGTGTAGTTGAAGCAGATGAAGTTTTCTTTGCTTATTCTTATAAGGGAACTAAACCAGCCAATATG
CCAAGACCTTCCCGTAAGAGAGGGAAACAAGTCAAGAAAAGAGGTATTAGTAAAGAGCAAGTGTGTGTGGGGACTGCTCTTGATAGACAAGGAAATATGA
TAATGGAATTATTATGTACTGGTAGAGTTACTGCTAATGAATTGGAACGTCTATATAGTAATCGTATAGGGGAAGATTCTATTTTATGCACTGACTCTCA
TAAATCATACATTCAATTTGCTACAGATATGCAATTAGAACATAAGAGAATTAAAAGGGGTAGACATAAAGAGGATATATACCATATAAATCACATAAAT
AGCCTACATTCTAATTTGAAGAGATGGATGTCCAGATTCAATGGTGTGGCTACAAAATACCTTGAAAACTATTTGAAGTGGCACAAATGGATAAATACAT
TCAGCACAGAAAAAGATACCATTAGAATTAAAAATTTGATAATTCATAGTAATATAGCACATAGTTACACTATGGTGAAGGAATTTAAGAATAGAAAACC
AATATTTGTTTAAAGAGTATTTTATTTCAATAAATACTGGAATTATAATCTATAAATTATGTATAATACTACTATAAAGTTAAAAAGAAAAGTATTTAAT
ACGGAGGTGAATAAATTATGAAAAAAATAATATCAGTCTTTGCTTTATTTACTATTGTGTTTGCATTAGTTTCATGTACAAAAGAAAAACCATCTGAATA
TACTCCAAATAAAGCACAATTAATTACAGTGGAAAACGCAGAAAATATATATAATCAATTGCCAGAGGAAATAAAAAAAGAAATAGATTTTGATTACGAA
AATATAAATATTGATAAAGTTGTACTTAAAGAAGAAATGGGAAATATATTAGATAAAACATATATAAATAAAGAAGTTTTAAGGCTTAATTTTATTATTA
GGAATAAAAATATACAACCTAATAATAGAATTGCTTTTGCAACAATTGAGGATTTTAAATATATTGGAGATGGATATGTAGATTAATAAGAAATCTAAAC
ATTAAATCATTGATATTTATTGCAAAAGAGCGGACATAAAATGTCCGCTTCTGCATTTTCTATTATCAACCTTTATTTAAAACAGAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 88 | 1113 | + | No |
Chemistry : DDE
ORF sequence :
MNNVTSVLAQAKALSEQEQQELITQLEEYLILGSQVAKITKEVKEMRFSKGRVCCHCNGTDVVRNGKRNGVQRYLCRNCKKSFSDLTNSATYRSKKTLDK
WLKYAKCMLSGYSIRKSAEEVEINIATSFYWRHKILNCISEFLGVGSVDGVVEADEVFFAYSYKGTKPANMPRPSRKRGKQVKKRGISKEQVCVGTALDR
QGNMIMELLCTGRVTANELERLYSNRIGEDSILCTDSHKSYIQFATDMQLEHKRIKRGRHKEDIYHINHINSLHSNLKRWMSRFNGVATKYLENYLKWHK
WINTFSTEKDTIRIKNLIIHSNIAHSYTMVKEFKNRKPIFV
WLKYAKCMLSGYSIRKSAEEVEINIATSFYWRHKILNCISEFLGVGSVDGVVEADEVFFAYSYKGTKPANMPRPSRKRGKQVKKRGISKEQVCVGTALDR
QGNMIMELLCTGRVTANELERLYSNRIGEDSILCTDSHKSYIQFATDMQLEHKRIKRGRHKEDIYHINHINSLHSNLKRWMSRFNGVATKYLENYLKWHK
WINTFSTEKDTIRIKNLIIHSNIAHSYTMVKEFKNRKPIFV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
369 bp | 122 aa | 1218 | 1586 | + | No |
Annotation : Putative lipoproteinDescription :
ORF sequence :
MKKIISVFALFTIVFALVSCTKEKPSEYTPNKAQLITVENAENIYNQLPEEIKKEIDFDYENINIDKVVLKEEMGNILDKTYINKEVLRLNFIIRNKNIQ
PNNRIAFATIEDFKYIGDGYVD
PNNRIAFATIEDFKYIGDGYVD
Blast result :
Comments
ISCldi1 is 90% (transposase) aa similar to ISClsp5.
References
1] ISfinder annotation (2017)
2] Pathogen Informatics. WTSI, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom. (2015) Direct GenBank submission.
2] Pathogen Informatics. WTSI, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom. (2015) Direct GenBank submission.