ISCldi1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CYZX01000002 ND Clostridium disporicum
Clostridium disporicum 2789STDY5834856
DNA section
IS Length : 1689 bp

Ends


IR Length : 24/26

IRL : GGCTCTGTTTTAAATAGTGGTTGATATGTGATACTTTTTTAAAATTTGTT
IRR : GGCTCTGTTTTAAATAAAGGTTGATAATAGAAAATGCAGAAGCGGACATT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAATAGTTTTATTTAAATTAGGTAGAT8

DNA sequence

GGCTCTGTTTTAAATAGTGGTTGATATGTGATACTTTTTTAAAATTTGTTTATAATATAAATATAATCAATTTTTGGAGGTATCACTATGAATAATGTAA
CATCAGTATTAGCACAAGCAAAAGCCTTGTCAGAACAAGAGCAACAAGAATTAATAACTCAATTAGAAGAATATCTTATTTTAGGTTCTCAAGTTGCCAA
AATAACTAAAGAAGTTAAAGAAATGAGATTTTCTAAAGGTAGAGTTTGTTGCCATTGTAACGGTACCGATGTGGTTAGAAATGGAAAAAGAAATGGTGTA
CAAAGATATTTATGTAGAAATTGCAAAAAATCATTTTCCGACTTAACTAATTCTGCTACTTACAGAAGCAAAAAGACTTTAGACAAGTGGCTTAAATACG
CTAAATGTATGTTAAGTGGTTACTCTATAAGAAAATCAGCAGAAGAAGTAGAAATTAATATAGCAACTTCTTTTTACTGGCGACATAAGATACTTAACTG
CATTAGTGAATTTCTTGGTGTAGGCTCTGTTGATGGTGTAGTTGAAGCAGATGAAGTTTTCTTTGCTTATTCTTATAAGGGAACTAAACCAGCCAATATG
CCAAGACCTTCCCGTAAGAGAGGGAAACAAGTCAAGAAAAGAGGTATTAGTAAAGAGCAAGTGTGTGTGGGGACTGCTCTTGATAGACAAGGAAATATGA
TAATGGAATTATTATGTACTGGTAGAGTTACTGCTAATGAATTGGAACGTCTATATAGTAATCGTATAGGGGAAGATTCTATTTTATGCACTGACTCTCA
TAAATCATACATTCAATTTGCTACAGATATGCAATTAGAACATAAGAGAATTAAAAGGGGTAGACATAAAGAGGATATATACCATATAAATCACATAAAT
AGCCTACATTCTAATTTGAAGAGATGGATGTCCAGATTCAATGGTGTGGCTACAAAATACCTTGAAAACTATTTGAAGTGGCACAAATGGATAAATACAT
TCAGCACAGAAAAAGATACCATTAGAATTAAAAATTTGATAATTCATAGTAATATAGCACATAGTTACACTATGGTGAAGGAATTTAAGAATAGAAAACC
AATATTTGTTTAAAGAGTATTTTATTTCAATAAATACTGGAATTATAATCTATAAATTATGTATAATACTACTATAAAGTTAAAAAGAAAAGTATTTAAT
ACGGAGGTGAATAAATTATGAAAAAAATAATATCAGTCTTTGCTTTATTTACTATTGTGTTTGCATTAGTTTCATGTACAAAAGAAAAACCATCTGAATA
TACTCCAAATAAAGCACAATTAATTACAGTGGAAAACGCAGAAAATATATATAATCAATTGCCAGAGGAAATAAAAAAAGAAATAGATTTTGATTACGAA
AATATAAATATTGATAAAGTTGTACTTAAAGAAGAAATGGGAAATATATTAGATAAAACATATATAAATAAAGAAGTTTTAAGGCTTAATTTTATTATTA
GGAATAAAAATATACAACCTAATAATAGAATTGCTTTTGCAACAATTGAGGATTTTAAATATATTGGAGATGGATATGTAGATTAATAAGAAATCTAAAC
ATTAAATCATTGATATTTATTGCAAAAGAGCGGACATAAAATGTCCGCTTCTGCATTTTCTATTATCAACCTTTATTTAAAACAGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa881113+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNNVTSVLAQAKALSEQEQQELITQLEEYLILGSQVAKITKEVKEMRFSKGRVCCHCNGTDVVRNGKRNGVQRYLCRNCKKSFSDLTNSATYRSKKTLDK
WLKYAKCMLSGYSIRKSAEEVEINIATSFYWRHKILNCISEFLGVGSVDGVVEADEVFFAYSYKGTKPANMPRPSRKRGKQVKKRGISKEQVCVGTALDR
QGNMIMELLCTGRVTANELERLYSNRIGEDSILCTDSHKSYIQFATDMQLEHKRIKRGRHKEDIYHINHINSLHSNLKRWMSRFNGVATKYLENYLKWHK
WINTFSTEKDTIRIKNLIIHSNIAHSYTMVKEFKNRKPIFV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
369 bp122 aa12181586+No
ORF function : Passenger Gene
Annotation : Putative lipoproteinDescription :

ORF sequence :

MKKIISVFALFTIVFALVSCTKEKPSEYTPNKAQLITVENAENIYNQLPEEIKKEIDFDYENINIDKVVLKEEMGNILDKTYINKEVLRLNFIIRNKNIQ
PNNRIAFATIEDFKYIGDGYVD

 

Blast result :
Comments
ISCldi1 is 90% (transposase) aa similar to ISClsp5.
References
1] ISfinder annotation (2017)
2] Pathogen Informatics. WTSI, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom. (2015) Direct GenBank submission.