ISCco3

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AIMJ01000022 ND Campylobacter coli
Campylobacter coli 90-3
DNA section
IS Length : 3285 bp

Ends


IR Length : 25

IRL : GGCTCTGTTAAAATATTTCATTGATTTTTAAGCTTTAACTTGTTATAATT
IRR : GGCTCTGTTAAAATATTTCATTGATAACAAATCTAAAAACATTCCAAAAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTTAGAGTAAAAATATAAAAATAATTAACCC8

DNA sequence

GGCTCTGTTAAAATATTTCATTGATTTTTAAGCTTTAACTTGTTATAATTGTCCTTATAAAACATCGATATATAGGGGCTTACAATGAAACAAGAACTAG
AAATCATCAAGCAACTTTTCAACTCACTCTCTGATACTGATAAAAAGACTTTAATAAAATCATTAAAAAGTGGCAATAAATCTAAAACAGCACCTAAATT
TTCTATAATCAAAGAGATAAAAGAATGCCCACATTGCAAATCTAGCAAATTCGTTAAAAATGGCACTAGTAGAGGCACTAGACGATTTTTATGCAGAGAG
TGTGGCAAGAGTTTTACTACAACAAACAACACTATATTTGCAAATGGCAAGAAAGATTTATCCGTTTGGCAGAAGTATATTCACTGTATGATTGAGAAAT
ATCCATTAAGAAAGACCGCTGAAATTTGCGGAGTATCTTTGCCTACCGCCTTTGCTTGGAGGCATAAAATTCTAGACACCTTACAAGAGATGCAAGAACA
AGTTAAACTTGACGGCGTAGTTGAAGCTGACGAAACCTTTGTGCCACTAAGTTTTAAAGGTCATCACAAGTCTTTTAACTTACCGCGTCTAGCCAAACAT
AGGGGCGAGCCTGCTACTAGGCGTGGTTTAAGTAAAGAGCAGGTCTGTGTAACTTGTTGCGTGAATTTAGATGGCTTATCTATCTCAAAGATTTCAAATT
TAGGTAAGCCAAAACTTAAAGACTTAGAAAAGGTTTTAAGTGGTAAAATCAATCAAGATAGTGTATTTGTAACTGATAGTTTTAGAGCCTATTTAAAACT
CTCAAACGATATGGAGCTAAACCATATAAGAATACCACGTAACAAATATTCTAATGGAGCTTTCAATATCCAGGTAATCAACTCTTATCACTCAAGATTA
AAAGCAATGCTAACTTATAACTTCAAAGGCGTATCAACTAAATATCTCAATAACTATCTTGTCTATCATAACTTTGTGAATTTTGCGAAAGATAGTAGAA
GCGATAAAGAGAGAATATTGTTAAACCATATCATCAGCACGGATTGTATAAGCAAATCAATAGATATTGCTAATAGACCAGCAATACCAGTGGCGGCGTA
ACAATGAGAGAGTTTAAATTTATAGATTTATTCGCTGGTATTGGTGGCTTTAGGCTCGCCTTAGAGAGTTTAGGGGCGAAATGTGTTTTTAGTGCTGAAA
TTGACCCACACGCTATACAAACATATAAGGAAAATTTTAACGATGACCCTACGTGTGATATAACTAAACTTGACCCAAAAAGGATACCTGATTTTGATAT
TTTATGTGCTGGTTTTCCTTGTCAGGCATTTTCAATTTCAGGGAAACAAAAAGGCTTTTCGGACACAACAAGGGGGACTTTATTCTTTGATATATGCAGG
ATTTTAAAAGAGAAACAGCCTACTGCTTTTATACTTGAAAACGTCCAAAACCTAGAAAAACACGATAAGGGCAATACTTTATTTGTGATGATAAATAGCC
TAAATGATTTAGGATATTCGGTAACTTATAAGGTTTTAAACGCCAAAGATTTTGGAGTGCCACAAAATAGAGAGCGTATAATAATTATAGGAAACAAAGA
GCATAAGGTGTTTAGCTTTAAAAAACTATATAAAACTCCAGTGATTTCAATGTATGATATGCTTGATAAAGACGGAGATTTTGAATATCTTCAAGCCCAT
GAATACACTCTACTTGAACCAAAATTTATTAAAACACAAGCCAAATCGGGACTAATATTTACAGGTTATAGAAACAAGACAATAAGAACCAATGGCACTA
AAGATGGAACTAACCATTTATCTAGGGTGCATAAGCAACCGAATAGAATATATTCGTCGCTCGGGATACACCCCACAATCGCTTCTCAAGAGCAAAGTGG
CAGATATTTTATTCTAGTAGATGGTAGAGTAAGAAAACTTACAATCAATGAATGTTATAGGTTTATGGGTTTTCCTGATAATTTTAAAAAAGTTGGTTCA
AAGAGCAAACAATACGAAAGAATAGGCAATAGCATTTGTGTCCCTATGATAAAAGAGGTAGCTAGTGAGATGATAAAGCAATTTTTTATAGATGATATTA
CGGAAAATCCAGAGACCGAATTTTTGGAAAAAACCTATAAACAGGCTATAGCACTTGATTTTAATAATATATCGCTTATAGACTATCAATTAGACAATGT
TAAGATAGTTGTAGAAAAAGAGGAAAGTTCTAAAGCTGTTTTTACTGTATTGGTGTCTAGCTTAACATATAAATGTCTTCACTCCGAACAAGATGTTAGA
ATGCACAAAACTGAATTAAAAAACGGATATAGCGGCAGGGGATTTGACACTAAATTTGTAACACCATTTTTAAAGCAAAAACAATTTCTTGGAGCTATGA
AAGAGAGTGGTTGGCTTACAAGAAGTTTAGAACAAGCACACCCATTCACACTAGATTTCCCAGGTAAAATTCAATCTAGTAGGTTAAAAGATGCTTTTTT
GCAAATCCTTAATGATGTAGAAGTAAATGGAGCAAACCCACTTGAATATTTACTTGCACTTTTTAATCTAAGCATAAAAGCAAAAAAAGATAGGGCTGTA
GAGATAATTAATCCGATAACTTCTGAAAATAAACTAGATATTAAAGATGTTATGGCTATTTTAGAAAAGCACTTTTATTATAAATACAATAGTCGTGGTG
CTTCCATATTGCCAGTTGTAGCACTTTATAGCGTATATGAATGTATGATAATGGAATTAAAAAGGTTTGAAAATAAAAAGCTTCTTGAAATATCATCACA
TTATTCAAGTGATAAAAATAGTGGCAATGCTGGAGATATTGTTGTTTTAAATTCAGATAATAGCTTATATGAAGTAGTTGAAGTTAAATTTGACATCGAG
CCGTCTTTGATTATGTTACTAGACGCTTACTCTAAAATAAAGCCTACATCTATACAAAGATACTATATATTAAGCACTAAAATAGCTAATGATGCAGCTG
TTAAGCAAATTAATGATAAGATTAAAGAAATTAGAAAGGAACACGGCTGTCAAGTGATAGTTAATGGATTAATGCAAAGTTTGAAATATTACTTACGGCT
TTTATCAAATACCGACCTATTTATAGAAAGATATGCCAAAAATTTACAAAAGCACCCTGAAATAAATAGCGAACATAAAGTTTCTTGGAACAATATTGTG
AATAATATGTTTTAATTTTAAGAATTTGGCTTACACTTTTGGAATGTTTTTAGATTTGTTATCAATGAAATATTTTAACAGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa851101+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQELEIIKQLFNSLSDTDKKTLIKSLKSGNKSKTAPKFSIIKEIKECPHCKSSKFVKNGTSRGTRRFLCRECGKSFTTTNNTIFANGKKDLSVWQKYIH
CMIEKYPLRKTAEICGVSLPTAFAWRHKILDTLQEMQEQVKLDGVVEADETFVPLSFKGHHKSFNLPRLAKHRGEPATRRGLSKEQVCVTCCVNLDGLSI
SKISNLGKPKLKDLEKVLSGKINQDSVFVTDSFRAYLKLSNDMELNHIRIPRNKYSNGAFNIQVINSYHSRLKAMLTYNFKGVSTKYLNNYLVYHNFVNF
AKDSRSDKERILLNHIISTDCISKSIDIANRPAIPVAA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
2112 bp703 aa11043215+No
ORF function : Passenger Gene
Annotation : DNA-cytosine methyltransferaseDescription :

ORF sequence :

MREFKFIDLFAGIGGFRLALESLGAKCVFSAEIDPHAIQTYKENFNDDPTCDITKLDPKRIPDFDILCAGFPCQAFSISGKQKGFSDTTRGTLFFDICRI
LKEKQPTAFILENVQNLEKHDKGNTLFVMINSLNDLGYSVTYKVLNAKDFGVPQNRERIIIIGNKEHKVFSFKKLYKTPVISMYDMLDKDGDFEYLQAHE
YTLLEPKFIKTQAKSGLIFTGYRNKTIRTNGTKDGTNHLSRVHKQPNRIYSSLGIHPTIASQEQSGRYFILVDGRVRKLTINECYRFMGFPDNFKKVGSK
SKQYERIGNSICVPMIKEVASEMIKQFFIDDITENPETEFLEKTYKQAIALDFNNISLIDYQLDNVKIVVEKEESSKAVFTVLVSSLTYKCLHSEQDVRM
HKTELKNGYSGRGFDTKFVTPFLKQKQFLGAMKESGWLTRSLEQAHPFTLDFPGKIQSSRLKDAFLQILNDVEVNGANPLEYLLALFNLSIKAKKDRAVE
IINPITSENKLDIKDVMAILEKHFYYKYNSRGASILPVVALYSVYECMIMELKRFENKKLLEISSHYSSDKNSGNAGDIVVLNSDNSLYEVVEVKFDIEP
SLIMLLDAYSKIKPTSIQRYYILSTKIANDAAVKQINDKIKEIRKEHGCQVIVNGLMQSLKYYLRLLSNTDLFIERYAKNLQKHPEINSEHKVSWNNIVN
NMF

 

Blast result :
Comments
ISCco3 is 64% (transposase) aa similar to ISCCo2.
References
1] ISfinder annotation (2017)
2] Richards,V.P., Lefebure,T., Pavinski Bitar,P.D. and Stanhope,M.J. (2013) Infect. Genet. Evol. 14, 200-213.