ISCig1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP015577 ND Campylobacter iguaniorum
Campylobacter iguaniorum M11343
DNA section
IS Length : 3602 bp

Ends


IR Length : 23/27

IRL : GGCTCTGTTAAAATAAACTATTGAATTTTAATCTTTATTTGGCTAGAATA
IRR : GGCTCTGTTAAATATTCTATTGATTTGATAAAAAAATAAAAAAATGCTAC

Insertion site


Left flankDirect repeatRight flankDR Length
GCTGCCTATTAGATTTTAATCGCATTTAAGCTA0

DNA sequence

GGCTCTGTTAAAATAAACTATTGAATTTTAATCTTTATTTGGCTAGAATATCTACATTAAAAATAGCAATGAAAGATGGTAAAATGGCAACTTCCAACGT
AGAGCTTGAAATCGTAAAACAACTTTTTAGCACTCTAAGCGATGACGATAAAAAATCATTTTTAAAATCTATCAAATCAAAAAAACAGGAACAAAATTTT
ACTTTTACCAAAAAGATAAAAGAGTGTCCGCATTGTAAATCTACTCACTTTGTAAAAAATGGCAAGGTGCAAGGCAGACAAAGATTTATATGTATGGATT
GTTATAAAACATTTGCCCAAACAAATAATACCATCTTATATTGTGTCAAAAAAGACCTATCTGTATGGGAAAAATATATCCATTGTATGATTGAAAAATA
CTCACTTAGAAAAACTGCCCAAATTTGTGGGATCTCACTACCTACTGCTTTTGCTTGGCGACACAAAATTCTTGACGCACTACAAGAAATACAAGAGAAC
GTAAAACTTGACGGCATTATTGAAACCGATGAAACTTTTATGCCTATCTCGTATAAAGGTCATCACAAGGATTTTAATTTTCCACGTTCGGCAAAACATC
GCGGCACGACAAACACGAATCGTGGTTTATCAAAAGAGCTAGTTTGCATACCTTGTGCTGTAAATTTAAATGGCAAATCAGTAGCCAAAATAGCAAATCT
TGGTAAGCCAAATGTAAAGGCTTTAAATAGCGTTATCTTTGGCAAAGTAGAAAAAGAGAGCGTATTTGTAACCAATAGCCTACGCTCATATCTAAAACTC
TCAAACGAAATGAATCTAAATCATATAAGAATACCGCGAAATAAACACTCTAATGGAAGTTTTAATATCCAAGTCGTAAATAACTATCATAGCAGACTAA
AATCTATGCTAGTATATAATTTTAAAGGTGTATCTACAAAGTATCTTAATAACTATCTTGTCTATCATAATTTTGTAAATTTTGCAAAAGAGAGTAGAAA
AGATAAGGAGCAGATGCTACTTAATCATATACTAAATACAAACTGTCTAAGCCAAAGTATAAGCGTAGCAAATAGGCCTGCTGTGCCGTTATTGGTGGCG
TAGAGTTAAAAAATTTAAAGAGAAAAAATGAGTTCAAAGAAAAACAAAGACGTTTTAGAAAATATATTAAATGAAAATTTGCTAGGGCTTACAAAAAAGG
GGATTGTAAGTAGAATGCTGGAACAAGAAGTCGCAGGACAAAGAGTGTTTTATGTATGGCTTAAACAAAATGGCTATGATATAGACCCTGAAAGTATGGA
TAAAAATCAAAGCGATGGCATTGTTGGTAATACTATAATAGAGTGCAAACTTAATGAAAATGAGGGCGGTGGCATCAAAAAAGCCTACCAAGAACTATAT
GACACAATCCCTACAAGGCTTAAACAAAAGGGCGATAGAATACCATATTACCGCATTTATGTAGAGCTTCAAACATTTGAAGTAGAAGTTTATGATTGCT
ATTGCAATTTAGTTAAAAAATTTGATTGGTATAGAAACCCAAATGCTTTTAAAAAGTTTTTCAATAATAAAAAAGAAACATACGAATATGATTTAAGAGA
TTATGATGTGGATTTGGTGGAAGTTATTCAAAACATCTATAAGGTTTTTAATATAACCACAAAAATCGAGGCTTACGAGAAACTTGAAAAAGGCATAATT
GGTTGGTTTAAGCCGTTTGATTATAAAAATGCAGACATAAATCGTCTTATTCTTGACAATGATAAAATGAACGAAAAGTATGTGCAAAAAATGGAGGGTG
CATTTTTTACTCCACCACAATATGTAAAAATTTCAACTCAATATGTCCTAAATGCAATAAAGCAAAGCAAAAAAGACGGTTATGATGATTATGTAATTAT
TGATAGATGTGTGGGCGTTGGAAATTTACAAAGTCAGTTTGATGAAAATATCTACTCTCATATGATATTAGGCACTATAAACGAAGCAGAAGCCCTTACG
GCAAATATTCGCTTTATGGATATGGCACAAGTTGAAGTGCTAGATAGTTTATCTGAATACGGCGTAAAATTCTATCAAAAAGCAATAGAAAACTATAAGA
AAAAGAATAATGTTAAAAATCTTGCTGTAATTTTTCTTGAAAATCCACCATACGCACAAACAAACTCAAACAAAGACGGCGGAATTAAGTCTATTTATCA
AAAGACTTGGGTTCACACTCAAATGGATAGGGGCGGGGAGGACCTCGATGAGCAGTTCTGCTTTTCAGCCTTTAAATACTATGAACCTTACGCATACATA
CATTATGGACCAATAAAGATTTGGAAATCAAGAAACTTAATAAACAAAGAAGTAGCAGAGTGCTATCTATGCAATCGCAAATACTTTAATGCTAGTGAGA
GTGCAATTGCGTTGATTAGTTGGCGAAATACGGATAAATATTATGATGAGCTACATTTCAAAAATGATATAGATGACGATTTTGTTGTAAAAAAAGTTAA
AAAAACAATATCTGATTTGTTTAGTGATGACGGCAAAAAAAATAGTGTTTGTATGATTGAAGCTAGAAATTTTTCTTTTGCTTCGCCACGCTTAACGGGT
AGCATAAACTCAAATGGTAAGTATGGCACAAAGTGGGTAAGTGAGAAGAACCTACTTAAAGTCATTCCACTTTTTTGTGCGTGCAGAGATGAAGTAAGTG
AAAATGGCTACATAAGAGATAATTTTAAAGATTATCGCATAATAGACACAGTTTATAAAACTAGCGATGGTGGCACTGCGTATCAAAAAGATAAAGAGTT
TTTGCAAGATTGTCTGCTCTATGCTACTTGCACACACAAAAATGACTGCGATGATAACTCAATTTTTTGGAAAGTGGCAGATAGATTGCTTGATAAAAAA
CGAAAAGATAGCGAAATTTATAAAATTTATAAATGGCTTTGTGCTGAAACAAAGATAAATGGTATAAAAGGTATAGAAAAATACAAAAAGAACGAATATG
GAAAGCTTTGGCGAGAACATAATCTTTATCCTAAAATCGTTGATTTAAAAGCTAAACTTAGAGCATTACATTTAGAGAAAATCCGTCCAAAAATGCTTAA
ATATGAAATATTAAAGTAGCCAAAAGTGCCACTTACGGCACTTTTTTACACAAATAACTTATCAAAAACAAGCATAGAAAGGAAGATTATATGTCAAACA
TTGATTTTGCTGATATTCAGGCTATGTCAGAGAAAAATATTCAAGCAATCTTAGATTTTATAGTCTATCAAGGCTCTTTCGCACAAGCTCTCTCTAAATG
TATTCAATTTGACAAACAGCAAATAGTGTAACATAAATCACGAGTTGCCCGCTTAAATTTCAGATACAAAAAAGGTAAAATTTGGCAACGATTTTAGTTG
CAAGAACAATAGACAGGAAAGAAAATGTTAGATAATTCAACTTATATGGCAATCGTGATAGGAATTTTAAGCACGATAGCTTTACTTATAGTAAAGAAAG
TTGCCGAAAAGGACAGGGCTGAAAAATTAAATTTGATGAAACATAGCACAAAGTAGCATTTTTTTATTTTTTTATCAAATCAATAGAATATTTAACAGAG
CC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa841103+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MATSNVELEIVKQLFSTLSDDDKKSFLKSIKSKKQEQNFTFTKKIKECPHCKSTHFVKNGKVQGRQRFICMDCYKTFAQTNNTILYCVKKDLSVWEKYIH
CMIEKYSLRKTAQICGISLPTAFAWRHKILDALQEIQENVKLDGIIETDETFMPISYKGHHKDFNFPRSAKHRGTTNTNRGLSKELVCIPCAVNLNGKSV
AKIANLGKPNVKALNSVIFGKVEKESVFVTNSLRSYLKLSNEMNLNHIRIPRNKHSNGSFNIQVVNNYHSRLKSMLVYNFKGVSTKYLNNYLVYHNFVNF
AKESRKDKEQMLLNHILNTNCLSQSISVANRPAVPLLVA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1992 bp663 aa11283119+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MSSKKNKDVLENILNENLLGLTKKGIVSRMLEQEVAGQRVFYVWLKQNGYDIDPESMDKNQSDGIVGNTIIECKLNENEGGGIKKAYQELYDTIPTRLKQ
KGDRIPYYRIYVELQTFEVEVYDCYCNLVKKFDWYRNPNAFKKFFNNKKETYEYDLRDYDVDLVEVIQNIYKVFNITTKIEAYEKLEKGIIGWFKPFDYK
NADINRLILDNDKMNEKYVQKMEGAFFTPPQYVKISTQYVLNAIKQSKKDGYDDYVIIDRCVGVGNLQSQFDENIYSHMILGTINEAEALTANIRFMDMA
QVEVLDSLSEYGVKFYQKAIENYKKKNNVKNLAVIFLENPPYAQTNSNKDGGIKSIYQKTWVHTQMDRGGEDLDEQFCFSAFKYYEPYAYIHYGPIKIWK
SRNLINKEVAECYLCNRKYFNASESAIALISWRNTDKYYDELHFKNDIDDDFVVKKVKKTISDLFSDDGKKNSVCMIEARNFSFASPRLTGSINSNGKYG
TKWVSEKNLLKVIPLFCACRDEVSENGYIRDNFKDYRIIDTVYKTSDGGTAYQKDKEFLQDCLLYATCTHKNDCDDNSIFWKVADRLLDKKRKDSEIYKI
YKWLCAETKINGIKGIEKYKKNEYGKLWREHNLYPKIVDLKAKLRALHLEKIRPKMLKYEILK

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
141 bp46 aa31913331+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MSNIDFADIQAMSEKNIQAILDFIVYQGSFAQALSKCIQFDKQQIV

 

Blast result :
Comments
ISCig1 is 66% (transposase) aa similar to ISCco2.
References
1] ISfinder annotation (2017)
2] Miller,W.G., Yee,E., Huynh,S., Chapman,M.H. and Parker,C.T. (2016) Genome Announc 4 (3).