ISPana1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNDY01000003 ND Paenibacillus naphthalenovorans
Paenibacillus naphthalenovorans PR-N1
DNA section
IS Length : 2006 bp

Ends


IR Length : 23/29

IRL : GGCTCTGTTAAAGGTACATGTTGATATTTGATACCTGCCCAAATCTTTAT
IRR : GGCTCTGTTATATTTCAATGTTGATAATTATATCAAAATAAAGGAAACCC

Insertion site


Left flankDirect repeatRight flankDR Length
TCATTTTTGTAAAACAAAAAGAAGCCAA8

DNA sequence

GGCTCTGTTAAAGGTACATGTTGATATTTGATACCTGCCCAAATCTTTATATAATTAACATAGGAACAAGTATTCGGGGGGGTTATAGGTGAGCAAAGCG
TTTAGAAACTTGTTAAAATATATCGACAAATTACCACACACCCAAAAAGAGCAAGTCTATCAATGGGTTAAACGCTATGTCGAGCCTTCTTCCTCTGCTG
GTGGTCGTTTAATCAATGAAATAAGAGAAACTCGCTTCAAGGAAGGATTTGAATGTCCTCATTGTTCATCAGAACACGTTGTTCGGTTCGGAAAATATAA
TGGTCGACAACGGTATCGCTGTAAATGTTGTGGCAAAACCTTCACTGACACAACCAATACCGTCTTGTACCGTACCCGAAAAGGCAACGAATGGATTACA
TTTGTTGATTGTATGTTCAAAGGATATTCCCTGCGAAAATCGGCTGAAGTCGTAGGAGTTACTTGGGTTACACTTTTTTATTGGAGACACAAACTGTTAA
ACGCCTTGAAACAAATGGATTTTGACCATTTTGAAGGTATCGTTGAAATTGACGAGACCTATTTCCTGTACTCTCAAAAGGGGCAACGTGGCATTACTGA
CCGTAAACCTCGCAAACGTGGCGGTAAATCCAAGCATAGAGGGATTAGCCACGAACAGGTTTGTGTTCTTGTTGCCAGAGACCGTACAAAAGCAACTGTC
TCCAAAGTTGCTTGTATGGGTCGGGTTGTGAAAACTAAGGTTGATAATATGATTGGTTCTAAACTAACTTCTGATAATGTACTCGTTACTGATGCTTGGA
TAGCTTACAAAACCTATGCAAAAGAAAAAGGTTTAGAGCATTACCGAATTAAATCAAATGACGGTAAGCACGTTATTAAAGGCTTGTATCACATCCAGAA
TGTAAATGGTCTCCATTCTCGTATGAAACAATGGATAGACCGCTTTAAAGGTGTGGCTACAAAGTATCTTGACAACTACCTTGCGTGGTTCTTGTTTGTA
GATAGTCGTAGTAACGAAAGCACTAATCAGCATATTAAAGAATTTCTATTAACATCATTTGTTTATGAAATGACTGACACTTATGACAGTTTGAGGCTAT
CAAAATTCAATGTGTAATCCTTATTCAATTAACGAAGCGGATTTGCTCAACAAGAAGTCACAATAGGAATGTTCTCCTGCTGTAAAATATAATTAGACGT
ATTAATGTTCCAGAAAATAAAACAAAAATCAGAGGATTAATATCCATTAGCAGATAAATGTGAATAATGATGATTTATATTTGGGAGGGTATAAATGAAA
GACTTCTTGAATGAAATTCGAAGACCAATAAATATATCGCTATCAAGAAAATTTTTATATTTGACTTTAATATTTATCGCAGGGATTATTTTAGGCATAA
TTTCAAAGTTACTTGATGAAACCGCCAGTAATTTATTACCATATTTTCTTGAAACGTTGGATTTAAGGAACTTCTTTTCTCGTATGGGGGTTTGGATTTT
CCTTGCGGTGCTAATATCTGTGTATTGCAAATCACCTATTAGGTCTGCTATAAATGTTTTTTTGTTTTTTGTAGGCATGGTAGGTAGCTATTATCTTTAT
ACTATTTTGATAGCTGGTTTTTTTCCTAAATCATATATGATGATTTGGATTATCATGACTATTATCTCGCCATTTTTGGCTTTTGTATGTTGGTATGCAA
AAGGGAAAGGTATAATTGCTATTTCTATTTCATCTATAATAATTATGTTTATTTCAAGACAGACTTTTGCATTTGGGTTTTGGTATTTTGATATTTTAAA
CACTTTGGAATTGTTGCTCTGGATAGCCACGATTTTTGTTTTATATCAGTCTCCAAAACAGATAAGCAAAGTGACTACCATAGGATTGCTTCTTTACTTT
GTAACTGCTCAAACAAATTTATTCTGGGGAATGTTGTAGGAACCCCTAATGCCTTGGGGTTTCCTTTATTTTGATATAATTATCAACATTGAAATATAAC
AGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa891117+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKAFRNLLKYIDKLPHTQKEQVYQWVKRYVEPSSSAGGRLINEIRETRFKEGFECPHCSSEHVVRFGKYNGRQRYRCKCCGKTFTDTTNTVLYRTRKGN
EWITFVDCMFKGYSLRKSAEVVGVTWVTLFYWRHKLLNALKQMDFDHFEGIVEIDETYFLYSQKGQRGITDRKPRKRGGKSKHRGISHEQVCVLVARDRT
KATVSKVACMGRVVKTKVDNMIGSKLTSDNVLVTDAWIAYKTYAKEKGLEHYRIKSNDGKHVIKGLYHIQNVNGLHSRMKQWIDRFKGVATKYLDNYLAW
FLFVDSRSNESTNQHIKEFLLTSFVYEMTDTYDSLRLSKFNV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
645 bp214 aa12951939+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MKDFLNEIRRPINISLSRKFLYLTLIFIAGIILGIISKLLDETASNLLPYFLETLDLRNFFSRMGVWIFLAVLISVYCKSPIRSAINVFLFFVGMVGSYY
LYTILIAGFFPKSYMMIWIIMTIISPFLAFVCWYAKGKGIIAISISSIIIMFISRQTFAFGFWYFDILNTLELLLWIATIFVLYQSPKQISKVTTIGLLL
YFVTAQTNLFWGML

 

Blast result :
Comments
ISPana1 is 96% aa (transposase) similar to ISBwe1.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.