ISSsu9

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012926 ND Streptococcus suis
Streptococcus suis BM407
DNA section
IS Length : 1796 bp

Ends


IR Length : 22/26

IRL : GGCTATGTTTTAAATCAATGTTGAAAATTGATATTTAACAGTAAAATAGG
IRR : GGCTATGTTTTAATATAGTGTTGAAATATAGCCTTATAAAAATTATAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGATGATAATATATTTTTTCAAAAATACAGTCAAAT8

DNA sequence

GGCTATGTTTTAAATCAATGTTGAAAATTGATATTTAACAGTAAAATAGGTTATAATATAGATAGAATAGTGTTTAGGAGGTAGAATTATGCCAAATGTA
AAGTCTATATTAAATGATATTGAAAAGTTACCATTACATCAGAAAGAACAGATACTATCAACTTTAGAAGAAATTCTTGTCTTAGGTTCACAAACAAGTC
AAGTAGAACAAGAAGTTAAAGAATTTAGATTTTCTAAGGGAAAAGTATGCCCCCTTTGTGGCTCTGAAACTATATCGAGAAATGGAAAGTATAATGGTAA
ACAAAGATATATCTGCAAATCTTGTAAGAAAACTTTTACGGACTTTACTAATTCTGCGACCTATAAAAGTAAGAAAACATTGGATAAGTGGCTTAAATAC
GCTAAGTGCATGATTAATGGCTACTCTATTAGGAAAAGTGCTAAAATTGTAGAAATTAACATAGCAACAAGTTTCTTTTGGAGACATAAAATTCTCGATT
GCATAAGCACATTTTTAGGTAAAGGATACGTTGATGGTGTTGTTGAAGCAGATGAAGTATTCTTTGCAGAAAGTTTTAAAGGTACAAAACCTTCTAACAT
GCCAAGACACTCTCGTAAAAGAGGGAAACAAGTTAAGAAAAGGGGTATCTCCAAGGAACAAGTTTGCATTGCTACTGCTATTGATAGGCAAGGTAATTTA
ATTATGGAATTAGCATGTAAAGGTAGAATTACATCTAATGAATTAGAAACATTATATGATGGACATATGGCAAATGGTTCTATACTTTGTACTGATAGTC
ATAAAAGTTATATTCAATTTGCAAATGATTTATCATTAGAACATAAACGTATAAAAAGAGGAAAACATAAAGAAGGATTATATCATATTCAACATATTAA
TGCTCTTCATAGCAATTTAAAGAAATGGATGAATAGGTTTAATGGTGTTGCAACAAAATATATCAACAACTATATTAAGTGGTTCAAATGGCTTCAAATA
TTTGATACAGATAAAGAGATAATAAAGGCTAAGAACTTTATGGTTCAAAGCAATGTAACCCATTCATATATCAAAATAAAAGATTTGAAAAATAGAGAGC
CAATGTATGTATAGCATGTGTGATATTTTGTAAATTATGTTATAATAAGCGTTGTTAAAAACTATAATCTAATGAACAATGGTAGTTTTTTACTAACTAA
TGAAAGGTGGATAGTTATGATTTCATTAATAGTTGCCGTAGCAAAAAATAATGTAATAGGAAACAATGGTGTTATACCATGGAAAATAAAGGGTGAACAA
AAAAGGTTTAAAGAATTAACGATAGGTAAAACAATAATCATGGGAAGAAAATCTTTTGAAGAAATAGGTAAGCCACTACCTAACAGAAAAACAATACTTA
TTTCAAATACGCAATGTATTGAATCAGAGAATTGTGCAACTGTAAAATCGCTTTCAGAAGCATTCGATTTAACAAAAGATGAAGACGAAGTATTTGTTGC
TGGTGGTGGACAGGTGTACAAGGAGTCATTTACCTATGCAGATAGAATATATATTACAGTTATAGATAAAATAATTGATGGCAATGTATATTTTCCAGAG
ATTTCTTCTGATGATTTTGTGAAATCCTATGAAGAGCGAATTGAGGGGGAAATACCATACACATATTATACGTATGAAAGAAGAAAATAAAAAATTATAT
TTAATGAACAATAGTCATCTATTGAGAATTATAGGTGGACAATCCCACCTATAATTTTTATAAGGCTATATTTCAACACTATATTAAAACATAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa891114+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPNVKSILNDIEKLPLHQKEQILSTLEEILVLGSQTSQVEQEVKEFRFSKGKVCPLCGSETISRNGKYNGKQRYICKSCKKTFTDFTNSATYKSKKTLDK
WLKYAKCMINGYSIRKSAKIVEINIATSFFWRHKILDCISTFLGKGYVDGVVEADEVFFAESFKGTKPSNMPRHSRKRGKQVKKRGISKEQVCIATAIDR
QGNLIMELACKGRITSNELETLYDGHMANGSILCTDSHKSYIQFANDLSLEHKRIKRGKHKEGLYHIQHINALHSNLKKWMNRFNGVATKYINNYIKWFK
WLQIFDTDKEIIKAKNFMVQSNVTHSYIKIKDLKNREPMYV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
474 bp157 aa12171690+No
ORF function : Passenger Gene
Annotation : Dihydrofolate reductaseDescription :

ORF sequence :

MISLIVAVAKNNVIGNNGVIPWKIKGEQKRFKELTIGKTIIMGRKSFEEIGKPLPNRKTILISNTQCIESENCATVKSLSEAFDLTKDEDEVFVAGGGQV
YKESFTYADRIYITVIDKIIDGNVYFPEISSDDFVKSYEERIEGEIPYTYYTYERRK

 

Blast result :
Comments
ISSsu9 is 94% aa (transposase) similar to ISCac2.
References
1] ISfinder submission (2017)
2] Holden,M.T., Hauser,H., Sanders,M., Ngo,T.H., Cherevach,I., Cronin,A., Goodhead,I., Mungall,K., Quail,M.A., Price,C., Rabbinowitsch,E., Sharp,S., Croucher,N.J., Chieu,T.B., Mai,N.T., Diep,T.S., Chinh,N.T., Kehoe,M., Leigh,J.A., Ward,P.N., Dowson,C.G., Whatmore,A.M., Chanter,N., Iversen,P., Gottschalk,M., Slater,J.D., Smith,H.E., Spratt,B.G., Xu,J., Ye,C., Bentley,S., Barrell,B.G., Schultsz,C., Maskell,D.J. and Parkhill,J. (2009) PLoS ONE 4 (7), E6072.