ISSsu8
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB627108 | ND | Streptococcus suis | Streptococcus suis NL184 Streptococcus suis NSUI002 |
DNA section
IS Length : 1115 bp
Ends
IR Length : 19/25
IRL : TGTAGCGTTACAATTGATGTGAGACTTATAGAAGTCAAAAAGAAGATTCC
IRR : TGTACCTTTGTCAATGATGTGAGACCAAAAATGTTATTTTGAAGATAACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTCAATATAAAAGTT | ATG | ATATGTTCAATATAAAA | 3 |
DNA sequence
TGTAGCGTTACAATTGATGTGAGACTTATAGAAGTCAAAAAGAAGATTCCTTGATATGATAAGAGTACCACCACTCACCAAAAAAGGAATCTTCTCATGA
CTAGTATATCACAAAATCTTCGTTATTTGCCACATACCTTGGAAACACGCTATCACGCTGTTAAAACCTACCGAAATGGAGCCTCTGTCGCCTTCATCTG
TCGACGCTACAAAGTATCAAAGGCTTCTCTCATGCGATGGAATAAGCGATTCGATGGCACAAAAGAATCGCTGAAAGGTCGCTCTCATCGCCCTCTAACA
CCGCATCCAAAGGCTCATACCGAGCAAGAGTTGACCTGGATTAAAAACTGCATCAAAAGAAATCCAAACGCAACCCTCATCGAAATTTTTTACAAACTCA
AAACGAATAAGGGATATGATAGGCATCCTTGCTCACTCTTTCGAATCTTGAGAAAGCTGGACTTCTTCAAATCCCCTAAAACAAAGAATAAACCTTATGT
ACCAAAACCATATGACACTCCGACTAAACTCGGTATCAAGTGGCAGATGGATGTCAAATATGTACCGACTCACTGCTACACAGGTAAACTGCCTGACAAG
TTCTACCAGTATACCGTCATTGATGAAGCCAGTCGAGAACGATTTATATTCCCTTTCAAAGAACAATCTTCCCACTCAACTGTTCAGTTCGTCAAATTGG
CTATCAAACACTTTGGCTACAAACCAAAAATCATTCAAACGGATAATGGCTTCGAGTTCACTCATTTCAAAGAAACCAAACAAGTGCACCCACTAGACTT
ACTTTGTCAGGAACTTGGTATTGAGCACAAGCTGATTCGTCCTCGAACACCCAGGCATAATGGCAAGGTTGAACGCAGTCACCGAAATGACAATCGACGT
TTCTACCAGCACTTGGTCTTCTATTCCTATGACGATCTGATCAAGCAGATGAAAACCTATCTTTATCGTTCTAATCGACTCCCTATGCAAACTTTAGGAT
GGAAATCTCCTATCGATATCAGAAAAGCTTTACTAGGAGCTAGCTCCTAGTAAAGCTTAACAAATAGTTATCTTCAAAATAACATTTTTGGTCTCACATC
ATTGACAAAGGTACA
CTAGTATATCACAAAATCTTCGTTATTTGCCACATACCTTGGAAACACGCTATCACGCTGTTAAAACCTACCGAAATGGAGCCTCTGTCGCCTTCATCTG
TCGACGCTACAAAGTATCAAAGGCTTCTCTCATGCGATGGAATAAGCGATTCGATGGCACAAAAGAATCGCTGAAAGGTCGCTCTCATCGCCCTCTAACA
CCGCATCCAAAGGCTCATACCGAGCAAGAGTTGACCTGGATTAAAAACTGCATCAAAAGAAATCCAAACGCAACCCTCATCGAAATTTTTTACAAACTCA
AAACGAATAAGGGATATGATAGGCATCCTTGCTCACTCTTTCGAATCTTGAGAAAGCTGGACTTCTTCAAATCCCCTAAAACAAAGAATAAACCTTATGT
ACCAAAACCATATGACACTCCGACTAAACTCGGTATCAAGTGGCAGATGGATGTCAAATATGTACCGACTCACTGCTACACAGGTAAACTGCCTGACAAG
TTCTACCAGTATACCGTCATTGATGAAGCCAGTCGAGAACGATTTATATTCCCTTTCAAAGAACAATCTTCCCACTCAACTGTTCAGTTCGTCAAATTGG
CTATCAAACACTTTGGCTACAAACCAAAAATCATTCAAACGGATAATGGCTTCGAGTTCACTCATTTCAAAGAAACCAAACAAGTGCACCCACTAGACTT
ACTTTGTCAGGAACTTGGTATTGAGCACAAGCTGATTCGTCCTCGAACACCCAGGCATAATGGCAAGGTTGAACGCAGTCACCGAAATGACAATCGACGT
TTCTACCAGCACTTGGTCTTCTATTCCTATGACGATCTGATCAAGCAGATGAAAACCTATCTTTATCGTTCTAATCGACTCCCTATGCAAACTTTAGGAT
GGAAATCTCCTATCGATATCAGAAAAGCTTTACTAGGAGCTAGCTCCTAGTAAAGCTTAACAAATAGTTATCTTCAAAATAACATTTTTGGTCTCACATC
ATTGACAAAGGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 97 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MTSISQNLRYLPHTLETRYHAVKTYRNGASVAFICRRYKVSKASLMRWNKRFDGTKESLKGRSHRPLTPHPKAHTEQELTWIKNCIKRNPNATLIEIFYK
LKTNKGYDRHPCSLFRILRKLDFFKSPKTKNKPYVPKPYDTPTKLGIKWQMDVKYVPTHCYTGKLPDKFYQYTVIDEASRERFIFPFKEQSSHSTVQFVK
LAIKHFGYKPKIIQTDNGFEFTHFKETKQVHPLDLLCQELGIEHKLIRPRTPRHNGKVERSHRNDNRRFYQHLVFYSYDDLIKQMKTYLYRSNRLPMQTL
GWKSPIDIRKALLGASS
LKTNKGYDRHPCSLFRILRKLDFFKSPKTKNKPYVPKPYDTPTKLGIKWQMDVKYVPTHCYTGKLPDKFYQYTVIDEASRERFIFPFKEQSSHSTVQFVK
LAIKHFGYKPKIIQTDNGFEFTHFKETKQVHPLDLLCQELGIEHKLIRPRTPRHNGKVERSHRNDNRRFYQHLVFYSYDDLIKQMKTYLYRSNRLPMQTL
GWKSPIDIRKALLGASS
Blast result :
Comments
ISSsu8 is 46% aa similar to ISTel1.
References
1] ISfinder submission (2017)
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.