ISSsu8

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB627108 ND Streptococcus suis
Streptococcus suis NL184
Streptococcus suis NSUI002
DNA section
IS Length : 1115 bp

Ends


IR Length : 19/25

IRL : TGTAGCGTTACAATTGATGTGAGACTTATAGAAGTCAAAAAGAAGATTCC
IRR : TGTACCTTTGTCAATGATGTGAGACCAAAAATGTTATTTTGAAGATAACT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTCAATATAAAAGTTATGATATGTTCAATATAAAA3

DNA sequence

TGTAGCGTTACAATTGATGTGAGACTTATAGAAGTCAAAAAGAAGATTCCTTGATATGATAAGAGTACCACCACTCACCAAAAAAGGAATCTTCTCATGA
CTAGTATATCACAAAATCTTCGTTATTTGCCACATACCTTGGAAACACGCTATCACGCTGTTAAAACCTACCGAAATGGAGCCTCTGTCGCCTTCATCTG
TCGACGCTACAAAGTATCAAAGGCTTCTCTCATGCGATGGAATAAGCGATTCGATGGCACAAAAGAATCGCTGAAAGGTCGCTCTCATCGCCCTCTAACA
CCGCATCCAAAGGCTCATACCGAGCAAGAGTTGACCTGGATTAAAAACTGCATCAAAAGAAATCCAAACGCAACCCTCATCGAAATTTTTTACAAACTCA
AAACGAATAAGGGATATGATAGGCATCCTTGCTCACTCTTTCGAATCTTGAGAAAGCTGGACTTCTTCAAATCCCCTAAAACAAAGAATAAACCTTATGT
ACCAAAACCATATGACACTCCGACTAAACTCGGTATCAAGTGGCAGATGGATGTCAAATATGTACCGACTCACTGCTACACAGGTAAACTGCCTGACAAG
TTCTACCAGTATACCGTCATTGATGAAGCCAGTCGAGAACGATTTATATTCCCTTTCAAAGAACAATCTTCCCACTCAACTGTTCAGTTCGTCAAATTGG
CTATCAAACACTTTGGCTACAAACCAAAAATCATTCAAACGGATAATGGCTTCGAGTTCACTCATTTCAAAGAAACCAAACAAGTGCACCCACTAGACTT
ACTTTGTCAGGAACTTGGTATTGAGCACAAGCTGATTCGTCCTCGAACACCCAGGCATAATGGCAAGGTTGAACGCAGTCACCGAAATGACAATCGACGT
TTCTACCAGCACTTGGTCTTCTATTCCTATGACGATCTGATCAAGCAGATGAAAACCTATCTTTATCGTTCTAATCGACTCCCTATGCAAACTTTAGGAT
GGAAATCTCCTATCGATATCAGAAAAGCTTTACTAGGAGCTAGCTCCTAGTAAAGCTTAACAAATAGTTATCTTCAAAATAACATTTTTGGTCTCACATC
ATTGACAAAGGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa971050+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTSISQNLRYLPHTLETRYHAVKTYRNGASVAFICRRYKVSKASLMRWNKRFDGTKESLKGRSHRPLTPHPKAHTEQELTWIKNCIKRNPNATLIEIFYK
LKTNKGYDRHPCSLFRILRKLDFFKSPKTKNKPYVPKPYDTPTKLGIKWQMDVKYVPTHCYTGKLPDKFYQYTVIDEASRERFIFPFKEQSSHSTVQFVK
LAIKHFGYKPKIIQTDNGFEFTHFKETKQVHPLDLLCQELGIEHKLIRPRTPRHNGKVERSHRNDNRRFYQHLVFYSYDDLIKQMKTYLYRSNRLPMQTL
GWKSPIDIRKALLGASS

 

Blast result :
Comments
ISSsu8 is 46% aa similar to ISTel1.
References
1] ISfinder submission (2017)
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.