ISSsu7

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB627112 ND Streptococcus suis
Streptococcus suis NL255
Streptococcus suis 90-1330
DNA section
IS Length : 1619 bp

Ends


Left end : CATACTAAGATTAGTAGTGAGGAAATCTCCGACGGGAGAAAGTACTCACTACTTTTTCTTTATGATAAAGTAGAGGTGTCTTGTTAAGTCGTAGGGCTTT
Right end : TACACTAAACTTTAGTCCAAAATAAAACAATTTCCTTATTTTGACTATTGAACTCAAAATATTTTTCGTCAAATACCTTGATGGACTTGACAAATAGTAG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CATACTAAGATTAGTAGTGAGGAAATCTCCGACGGGAGAAAGTACTCACTACTTTTTCTTTATGATAAAGTAGAGGTGTCTTGTTAAGTCGTAGGGCTTT
TTGACGCTAGACGTCGCAACAAAAACTGGCAAGACACCTGTTTTAGAAAGAATGTTATCAAAGTATGTGGGACGCCAGACGTCGAGTATTGAAAATGACA
TCACTAAAACAAGGAATCATTCAAGACAAAGAGGTAATATCATGCGAGTAGTATTTGGGATTGACGTGAGTAAAGTAAGTTCAGAAGTAGCCATTCTAGT
CAACGGCGAGAAGGTTCATAACTACACCATGTCCAATGATGCCATTGGCTTTTCTCGGCTACTTGGCGATTTGAAAACCGTCCACAAGCCAGAAATCATC
TTTGAAGCAACAGGCGTCTATTCTCGTCGTCTTCAATCTTTTCTGGATGAACATGGCTACGCTTATACACGACTCAATCCCTTAGAAGCCAAGAAGCAAC
TGGATAGCTTGCGTGTGAGAAAAACAGATCAAATTGACGCCGAAAAACTAGCTCAATCTCAGTTTGTACTGAATCGTAAAACGACGTATGTCCAAGAAGA
AATCTACCAAAACTTGCGGGATCTCAGCCGTTTCTATCAGAATCTGACCGAGGACATCGTTCGAGCTAAAAACCGCCTGCACAAGGCCTTACAGGTCACT
TTTCCTGAATTGGAAAATATCTTATCAACACCATCTGGCGAACAATACTGGAACTTAGTTATAGCTTTTCCTTGCAAGGACTTCGTGCTTGATTTAAGCA
AGGACGAACTCTCAGAGAGCATTCGTCAGTCCACCTCAAAACGTATTTCGGACAAGCGTGTGGCGTATTTAGCTGAGAAGTTGATAGCACTAGCTAATCA
ATCGTATTGTGCTGTCAAGAAAACCTCTCCAATGCTGGAAGAGGTCCGTTACTATGCAAAAGAATTGTTTCGGCTTTCTGAACAGAGACAAACTATCCTA
GACGAAATGGTGGAACTAGCTCAGCCATTACCTGAATATGACATTCTGCTCTCTATTCCTGGAATAGCTGAGACTACTGCAACAAGTATTATTGGTGAAC
TGGGAGATATTCGCCGTTTTCAGTCAGCCAATCAAATCAATGCCTTTATCGGTATTGACCTGAGACACTATGAATCTGGTAACTTCCTCGCTAAGGAACA
CATTACCAAGCGTGGTAATCCCTACGCTAGAAAGATTCTGTTCAAGTGTATCCACAATATCGCTTCAGCTAGTCATACCAATCCTTGCCATATCGCAGAC
TTTTATGAGAAACGAAAAAGACAATCGCAAACGACTTCAACGAAGCCGCACACGATTGCCTCCATACATCGTCTCATTCGGACAATGTATTACCTCATTA
TGCATAACAAACTTTACGATTACGCTTCAACCCAAAATCGGTAAAACTGTTTATGCTCTATCATTGTAACACCTTATCAAAAAATTTCAACATAAGGTGT
TGGTTTTGTATGCACTTTTTACACTAAACTTTAGTCCAAAATAAAACAATTTCCTTATTTTGACTATTGAACTCAAAATATTTTTCGTCAAATACCTTGA
TGGACTTGACAAATAGTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1293 bp430 aa1521444+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MLSKYVGRQTSSIENDITKTRNHSRQRGNIMRVVFGIDVSKVSSEVAILVNGEKVHNYTMSNDAIGFSRLLGDLKTVHKPEIIFEATGVYSRRLQSFLDE
HGYAYTRLNPLEAKKQLDSLRVRKTDQIDAEKLAQSQFVLNRKTTYVQEEIYQNLRDLSRFYQNLTEDIVRAKNRLHKALQVTFPELENILSTPSGEQYW
NLVIAFPCKDFVLDLSKDELSESIRQSTSKRISDKRVAYLAEKLIALANQSYCAVKKTSPMLEEVRYYAKELFRLSEQRQTILDEMVELAQPLPEYDILL
SIPGIAETTATSIIGELGDIRRFQSANQINAFIGIDLRHYESGNFLAKEHITKRGNPYARKILFKCIHNIASASHTNPCHIADFYEKRKRQSQTTSTKPH
TIASIHRLIRTMYYLIMHNKLYDYASTQNR

 

Blast result :
Comments
ISSsu7 is 67% aa similar to ISL4.
References
1] ISfinder submission (2017)
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
3] Sun,Y., Vaillancourt,K., Frenette,M., Grenier,D. and Pombert,J.-F. (2015) Direct GenBank submission.