ISSsu7
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB627112 | ND | Streptococcus suis | Streptococcus suis NL255 Streptococcus suis 90-1330 |
DNA section
IS Length : 1619 bp
Ends
Left end : CATACTAAGATTAGTAGTGAGGAAATCTCCGACGGGAGAAAGTACTCACTACTTTTTCTTTATGATAAAGTAGAGGTGTCTTGTTAAGTCGTAGGGCTTT
Right end : TACACTAAACTTTAGTCCAAAATAAAACAATTTCCTTATTTTGACTATTGAACTCAAAATATTTTTCGTCAAATACCTTGATGGACTTGACAAATAGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CATACTAAGATTAGTAGTGAGGAAATCTCCGACGGGAGAAAGTACTCACTACTTTTTCTTTATGATAAAGTAGAGGTGTCTTGTTAAGTCGTAGGGCTTT
TTGACGCTAGACGTCGCAACAAAAACTGGCAAGACACCTGTTTTAGAAAGAATGTTATCAAAGTATGTGGGACGCCAGACGTCGAGTATTGAAAATGACA
TCACTAAAACAAGGAATCATTCAAGACAAAGAGGTAATATCATGCGAGTAGTATTTGGGATTGACGTGAGTAAAGTAAGTTCAGAAGTAGCCATTCTAGT
CAACGGCGAGAAGGTTCATAACTACACCATGTCCAATGATGCCATTGGCTTTTCTCGGCTACTTGGCGATTTGAAAACCGTCCACAAGCCAGAAATCATC
TTTGAAGCAACAGGCGTCTATTCTCGTCGTCTTCAATCTTTTCTGGATGAACATGGCTACGCTTATACACGACTCAATCCCTTAGAAGCCAAGAAGCAAC
TGGATAGCTTGCGTGTGAGAAAAACAGATCAAATTGACGCCGAAAAACTAGCTCAATCTCAGTTTGTACTGAATCGTAAAACGACGTATGTCCAAGAAGA
AATCTACCAAAACTTGCGGGATCTCAGCCGTTTCTATCAGAATCTGACCGAGGACATCGTTCGAGCTAAAAACCGCCTGCACAAGGCCTTACAGGTCACT
TTTCCTGAATTGGAAAATATCTTATCAACACCATCTGGCGAACAATACTGGAACTTAGTTATAGCTTTTCCTTGCAAGGACTTCGTGCTTGATTTAAGCA
AGGACGAACTCTCAGAGAGCATTCGTCAGTCCACCTCAAAACGTATTTCGGACAAGCGTGTGGCGTATTTAGCTGAGAAGTTGATAGCACTAGCTAATCA
ATCGTATTGTGCTGTCAAGAAAACCTCTCCAATGCTGGAAGAGGTCCGTTACTATGCAAAAGAATTGTTTCGGCTTTCTGAACAGAGACAAACTATCCTA
GACGAAATGGTGGAACTAGCTCAGCCATTACCTGAATATGACATTCTGCTCTCTATTCCTGGAATAGCTGAGACTACTGCAACAAGTATTATTGGTGAAC
TGGGAGATATTCGCCGTTTTCAGTCAGCCAATCAAATCAATGCCTTTATCGGTATTGACCTGAGACACTATGAATCTGGTAACTTCCTCGCTAAGGAACA
CATTACCAAGCGTGGTAATCCCTACGCTAGAAAGATTCTGTTCAAGTGTATCCACAATATCGCTTCAGCTAGTCATACCAATCCTTGCCATATCGCAGAC
TTTTATGAGAAACGAAAAAGACAATCGCAAACGACTTCAACGAAGCCGCACACGATTGCCTCCATACATCGTCTCATTCGGACAATGTATTACCTCATTA
TGCATAACAAACTTTACGATTACGCTTCAACCCAAAATCGGTAAAACTGTTTATGCTCTATCATTGTAACACCTTATCAAAAAATTTCAACATAAGGTGT
TGGTTTTGTATGCACTTTTTACACTAAACTTTAGTCCAAAATAAAACAATTTCCTTATTTTGACTATTGAACTCAAAATATTTTTCGTCAAATACCTTGA
TGGACTTGACAAATAGTAG
TTGACGCTAGACGTCGCAACAAAAACTGGCAAGACACCTGTTTTAGAAAGAATGTTATCAAAGTATGTGGGACGCCAGACGTCGAGTATTGAAAATGACA
TCACTAAAACAAGGAATCATTCAAGACAAAGAGGTAATATCATGCGAGTAGTATTTGGGATTGACGTGAGTAAAGTAAGTTCAGAAGTAGCCATTCTAGT
CAACGGCGAGAAGGTTCATAACTACACCATGTCCAATGATGCCATTGGCTTTTCTCGGCTACTTGGCGATTTGAAAACCGTCCACAAGCCAGAAATCATC
TTTGAAGCAACAGGCGTCTATTCTCGTCGTCTTCAATCTTTTCTGGATGAACATGGCTACGCTTATACACGACTCAATCCCTTAGAAGCCAAGAAGCAAC
TGGATAGCTTGCGTGTGAGAAAAACAGATCAAATTGACGCCGAAAAACTAGCTCAATCTCAGTTTGTACTGAATCGTAAAACGACGTATGTCCAAGAAGA
AATCTACCAAAACTTGCGGGATCTCAGCCGTTTCTATCAGAATCTGACCGAGGACATCGTTCGAGCTAAAAACCGCCTGCACAAGGCCTTACAGGTCACT
TTTCCTGAATTGGAAAATATCTTATCAACACCATCTGGCGAACAATACTGGAACTTAGTTATAGCTTTTCCTTGCAAGGACTTCGTGCTTGATTTAAGCA
AGGACGAACTCTCAGAGAGCATTCGTCAGTCCACCTCAAAACGTATTTCGGACAAGCGTGTGGCGTATTTAGCTGAGAAGTTGATAGCACTAGCTAATCA
ATCGTATTGTGCTGTCAAGAAAACCTCTCCAATGCTGGAAGAGGTCCGTTACTATGCAAAAGAATTGTTTCGGCTTTCTGAACAGAGACAAACTATCCTA
GACGAAATGGTGGAACTAGCTCAGCCATTACCTGAATATGACATTCTGCTCTCTATTCCTGGAATAGCTGAGACTACTGCAACAAGTATTATTGGTGAAC
TGGGAGATATTCGCCGTTTTCAGTCAGCCAATCAAATCAATGCCTTTATCGGTATTGACCTGAGACACTATGAATCTGGTAACTTCCTCGCTAAGGAACA
CATTACCAAGCGTGGTAATCCCTACGCTAGAAAGATTCTGTTCAAGTGTATCCACAATATCGCTTCAGCTAGTCATACCAATCCTTGCCATATCGCAGAC
TTTTATGAGAAACGAAAAAGACAATCGCAAACGACTTCAACGAAGCCGCACACGATTGCCTCCATACATCGTCTCATTCGGACAATGTATTACCTCATTA
TGCATAACAAACTTTACGATTACGCTTCAACCCAAAATCGGTAAAACTGTTTATGCTCTATCATTGTAACACCTTATCAAAAAATTTCAACATAAGGTGT
TGGTTTTGTATGCACTTTTTACACTAAACTTTAGTCCAAAATAAAACAATTTCCTTATTTTGACTATTGAACTCAAAATATTTTTCGTCAAATACCTTGA
TGGACTTGACAAATAGTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1293 bp | 430 aa | 152 | 1444 | + | No |
Chemistry : DEDD
ORF sequence :
MLSKYVGRQTSSIENDITKTRNHSRQRGNIMRVVFGIDVSKVSSEVAILVNGEKVHNYTMSNDAIGFSRLLGDLKTVHKPEIIFEATGVYSRRLQSFLDE
HGYAYTRLNPLEAKKQLDSLRVRKTDQIDAEKLAQSQFVLNRKTTYVQEEIYQNLRDLSRFYQNLTEDIVRAKNRLHKALQVTFPELENILSTPSGEQYW
NLVIAFPCKDFVLDLSKDELSESIRQSTSKRISDKRVAYLAEKLIALANQSYCAVKKTSPMLEEVRYYAKELFRLSEQRQTILDEMVELAQPLPEYDILL
SIPGIAETTATSIIGELGDIRRFQSANQINAFIGIDLRHYESGNFLAKEHITKRGNPYARKILFKCIHNIASASHTNPCHIADFYEKRKRQSQTTSTKPH
TIASIHRLIRTMYYLIMHNKLYDYASTQNR
HGYAYTRLNPLEAKKQLDSLRVRKTDQIDAEKLAQSQFVLNRKTTYVQEEIYQNLRDLSRFYQNLTEDIVRAKNRLHKALQVTFPELENILSTPSGEQYW
NLVIAFPCKDFVLDLSKDELSESIRQSTSKRISDKRVAYLAEKLIALANQSYCAVKKTSPMLEEVRYYAKELFRLSEQRQTILDEMVELAQPLPEYDILL
SIPGIAETTATSIIGELGDIRRFQSANQINAFIGIDLRHYESGNFLAKEHITKRGNPYARKILFKCIHNIASASHTNPCHIADFYEKRKRQSQTTSTKPH
TIASIHRLIRTMYYLIMHNKLYDYASTQNR
Blast result :
Comments
ISSsu7 is 67% aa similar to ISL4.
References
1] ISfinder submission (2017)
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
3] Sun,Y., Vaillancourt,K., Frenette,M., Grenier,D. and Pombert,J.-F. (2015) Direct GenBank submission.
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
3] Sun,Y., Vaillancourt,K., Frenette,M., Grenier,D. and Pombert,J.-F. (2015) Direct GenBank submission.