ISSsu6
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB627109 | ND | Streptococcus suis | Streptococcus suis NL194 Streptococcus suis 05HAS68 |
DNA section
IS Length : 1416 bp
Ends
IR Length : 18/25
IRL : GGTTCTATAATTTCTGTAGTGGGTAAAACCACCGTGGAGATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAACACCTAGAGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTACACCTTT | TAAAAATG | AAGCTGGGCAAG | 8 |
TTAATCATAAAT | AAAAAAAC | TGACCTTCAAAT | 8 |
DNA sequence
GGTTCTATAATTTCTGTAGTGGGTAAAACCACCGTGGAGATTATGGAGCCTTTTTGAGTATAGAAAAAAAGTCCCATATGACCTATAATGAAAAGTGCTC
AAACTATCATTTTAGAAAGACTCATATGGAACAACTAAATCTTATCACAAATTTTCTCAGAATTAAAGACAAAAATATCACTATCACTGATGAATATGAT
ATGGGAACTCACTTAGAACTCCACGGTTACTTGGATTACATGGCTCCTAAATGTCCAGAATGCAAGGGACAAATGGCTAAGTACGACTACCAGAAAGCAT
CAAAAATTCCCTACCTAGAAACTGCTGGTTATCCACTCCTTATCCGCCTTAGAAAGCGTCGCTTCAAGTGTAAAGAATGTGGGAAAATGGCGGTTGCTGA
AACTCCTCTTGTCAAGAAGAACCACCAAATCTCTGTCGCGGTTAACCAGAAAATCGCCCAATTACTCATCGAAAATCAAGCAATGACACATATTGCACAC
AGGCTATCTATCTCAACCTCATCAGTTATGAGAAAGCTTAATGAGTTCAAGTTTGAAACAGATTGGAATACCTTACCTGAGGTGATGAGCTGGGATGAAT
ATAGCTTCAAGAAGGGGAAAATGAGCTTTATCGCTCAAGATTTCAACTCCCTAAATGTCATTACTATTCTGGACGGAAGAACACAAGCAACCATCCGAAA
CCACTTTCTACGCTATCCTAGAAAGGTTAGAAATCAAGTCAAAGTCATTACCATGGATATGTTTAGTCCCTATTATCAACTTGCTAAACAGCTTTTTCCG
AATGCAAAAATTGTACTCGACCGCTTTCATATTGTTCAACACCTTAGTCGTGCTATGAACCGTATTCGTATTCAAATTATGAATCAATTCGACAGAACAT
CGCAGGAATACAGAGCCTTGAAACGCTACTGGAAATTGATTCAACAGGATAGTCGTAAACTCAGCGATAAACGATTTTATCGCCCTATGTTTCGAATGCA
TTTGACTAACAAGGAAATCCTAGAAAAACTACTGTCTTTCTCCGAGGAACTACGACAGCACTATGAACTCTATCAATTGCTCTTATTCCATTTCCAAGAG
AAGAACTCAGACCATTTCTTTGACATCGTCGAACTGGAAATAGCCACTGTTAATCCTATTTTCCAGACGGTATTTAAGACATTTCTAAAGGATAAAGACA
AGGTTTTGAATGCCCTAGAATTGCCTTATTCCAACGCCAAACTGGAAGCTACTAATAATCTCATCAAAGTCATTAAGAGAAATGCCTTTGGTTTCAGGAA
CTTTGAGAACTTTAAAAAACGCATTTTGATTGCTTTGAACATAAAGAAAGAGAGAACGAAGTTCGTCCTCTCTAGGTGTTAGCTTTTCATCTACCCACTA
CAGTTGACAAAGAGCC
AAACTATCATTTTAGAAAGACTCATATGGAACAACTAAATCTTATCACAAATTTTCTCAGAATTAAAGACAAAAATATCACTATCACTGATGAATATGAT
ATGGGAACTCACTTAGAACTCCACGGTTACTTGGATTACATGGCTCCTAAATGTCCAGAATGCAAGGGACAAATGGCTAAGTACGACTACCAGAAAGCAT
CAAAAATTCCCTACCTAGAAACTGCTGGTTATCCACTCCTTATCCGCCTTAGAAAGCGTCGCTTCAAGTGTAAAGAATGTGGGAAAATGGCGGTTGCTGA
AACTCCTCTTGTCAAGAAGAACCACCAAATCTCTGTCGCGGTTAACCAGAAAATCGCCCAATTACTCATCGAAAATCAAGCAATGACACATATTGCACAC
AGGCTATCTATCTCAACCTCATCAGTTATGAGAAAGCTTAATGAGTTCAAGTTTGAAACAGATTGGAATACCTTACCTGAGGTGATGAGCTGGGATGAAT
ATAGCTTCAAGAAGGGGAAAATGAGCTTTATCGCTCAAGATTTCAACTCCCTAAATGTCATTACTATTCTGGACGGAAGAACACAAGCAACCATCCGAAA
CCACTTTCTACGCTATCCTAGAAAGGTTAGAAATCAAGTCAAAGTCATTACCATGGATATGTTTAGTCCCTATTATCAACTTGCTAAACAGCTTTTTCCG
AATGCAAAAATTGTACTCGACCGCTTTCATATTGTTCAACACCTTAGTCGTGCTATGAACCGTATTCGTATTCAAATTATGAATCAATTCGACAGAACAT
CGCAGGAATACAGAGCCTTGAAACGCTACTGGAAATTGATTCAACAGGATAGTCGTAAACTCAGCGATAAACGATTTTATCGCCCTATGTTTCGAATGCA
TTTGACTAACAAGGAAATCCTAGAAAAACTACTGTCTTTCTCCGAGGAACTACGACAGCACTATGAACTCTATCAATTGCTCTTATTCCATTTCCAAGAG
AAGAACTCAGACCATTTCTTTGACATCGTCGAACTGGAAATAGCCACTGTTAATCCTATTTTCCAGACGGTATTTAAGACATTTCTAAAGGATAAAGACA
AGGTTTTGAATGCCCTAGAATTGCCTTATTCCAACGCCAAACTGGAAGCTACTAATAATCTCATCAAAGTCATTAAGAGAAATGCCTTTGGTTTCAGGAA
CTTTGAGAACTTTAAAAAACGCATTTTGATTGCTTTGAACATAAAGAAAGAGAGAACGAAGTTCGTCCTCTCTAGGTGTTAGCTTTTCATCTACCCACTA
CAGTTGACAAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 78 | 1382 | + | No |
Chemistry : Unknow
ORF sequence :
MTYNEKCSNYHFRKTHMEQLNLITNFLRIKDKNITITDEYDMGTHLELHGYLDYMAPKCPECKGQMAKYDYQKASKIPYLETAGYPLLIRLRKRRFKCKE
CGKMAVAETPLVKKNHQISVAVNQKIAQLLIENQAMTHIAHRLSISTSSVMRKLNEFKFETDWNTLPEVMSWDEYSFKKGKMSFIAQDFNSLNVITILDG
RTQATIRNHFLRYPRKVRNQVKVITMDMFSPYYQLAKQLFPNAKIVLDRFHIVQHLSRAMNRIRIQIMNQFDRTSQEYRALKRYWKLIQQDSRKLSDKRF
YRPMFRMHLTNKEILEKLLSFSEELRQHYELYQLLLFHFQEKNSDHFFDIVELEIATVNPIFQTVFKTFLKDKDKVLNALELPYSNAKLEATNNLIKVIK
RNAFGFRNFENFKKRILIALNIKKERTKFVLSRC
CGKMAVAETPLVKKNHQISVAVNQKIAQLLIENQAMTHIAHRLSISTSSVMRKLNEFKFETDWNTLPEVMSWDEYSFKKGKMSFIAQDFNSLNVITILDG
RTQATIRNHFLRYPRKVRNQVKVITMDMFSPYYQLAKQLFPNAKIVLDRFHIVQHLSRAMNRIRIQIMNQFDRTSQEYRALKRYWKLIQQDSRKLSDKRF
YRPMFRMHLTNKEILEKLLSFSEELRQHYELYQLLLFHFQEKNSDHFFDIVELEIATVNPIFQTVFKTFLKDKDKVLNALELPYSNAKLEATNNLIKVIK
RNAFGFRNFENFKKRILIALNIKKERTKFVLSRC
Blast result :
Comments
ISSsu6 is 92% aa similar to ISSth1.
References
1] ISfinder submission (2017)
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
3] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2 (3), E315.
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
3] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2 (3), E315.