ISSsu6

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB627109 ND Streptococcus suis
Streptococcus suis NL194
Streptococcus suis 05HAS68
DNA section
IS Length : 1416 bp

Ends


IR Length : 18/25

IRL : GGTTCTATAATTTCTGTAGTGGGTAAAACCACCGTGGAGATTATGGAGCC
IRR : GGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAACACCTAGAGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GATTACACCTTTTAAAAATGAAGCTGGGCAAG8
TTAATCATAAATAAAAAAACTGACCTTCAAAT8

DNA sequence

GGTTCTATAATTTCTGTAGTGGGTAAAACCACCGTGGAGATTATGGAGCCTTTTTGAGTATAGAAAAAAAGTCCCATATGACCTATAATGAAAAGTGCTC
AAACTATCATTTTAGAAAGACTCATATGGAACAACTAAATCTTATCACAAATTTTCTCAGAATTAAAGACAAAAATATCACTATCACTGATGAATATGAT
ATGGGAACTCACTTAGAACTCCACGGTTACTTGGATTACATGGCTCCTAAATGTCCAGAATGCAAGGGACAAATGGCTAAGTACGACTACCAGAAAGCAT
CAAAAATTCCCTACCTAGAAACTGCTGGTTATCCACTCCTTATCCGCCTTAGAAAGCGTCGCTTCAAGTGTAAAGAATGTGGGAAAATGGCGGTTGCTGA
AACTCCTCTTGTCAAGAAGAACCACCAAATCTCTGTCGCGGTTAACCAGAAAATCGCCCAATTACTCATCGAAAATCAAGCAATGACACATATTGCACAC
AGGCTATCTATCTCAACCTCATCAGTTATGAGAAAGCTTAATGAGTTCAAGTTTGAAACAGATTGGAATACCTTACCTGAGGTGATGAGCTGGGATGAAT
ATAGCTTCAAGAAGGGGAAAATGAGCTTTATCGCTCAAGATTTCAACTCCCTAAATGTCATTACTATTCTGGACGGAAGAACACAAGCAACCATCCGAAA
CCACTTTCTACGCTATCCTAGAAAGGTTAGAAATCAAGTCAAAGTCATTACCATGGATATGTTTAGTCCCTATTATCAACTTGCTAAACAGCTTTTTCCG
AATGCAAAAATTGTACTCGACCGCTTTCATATTGTTCAACACCTTAGTCGTGCTATGAACCGTATTCGTATTCAAATTATGAATCAATTCGACAGAACAT
CGCAGGAATACAGAGCCTTGAAACGCTACTGGAAATTGATTCAACAGGATAGTCGTAAACTCAGCGATAAACGATTTTATCGCCCTATGTTTCGAATGCA
TTTGACTAACAAGGAAATCCTAGAAAAACTACTGTCTTTCTCCGAGGAACTACGACAGCACTATGAACTCTATCAATTGCTCTTATTCCATTTCCAAGAG
AAGAACTCAGACCATTTCTTTGACATCGTCGAACTGGAAATAGCCACTGTTAATCCTATTTTCCAGACGGTATTTAAGACATTTCTAAAGGATAAAGACA
AGGTTTTGAATGCCCTAGAATTGCCTTATTCCAACGCCAAACTGGAAGCTACTAATAATCTCATCAAAGTCATTAAGAGAAATGCCTTTGGTTTCAGGAA
CTTTGAGAACTTTAAAAAACGCATTTTGATTGCTTTGAACATAAAGAAAGAGAGAACGAAGTTCGTCCTCTCTAGGTGTTAGCTTTTCATCTACCCACTA
CAGTTGACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa781382+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTYNEKCSNYHFRKTHMEQLNLITNFLRIKDKNITITDEYDMGTHLELHGYLDYMAPKCPECKGQMAKYDYQKASKIPYLETAGYPLLIRLRKRRFKCKE
CGKMAVAETPLVKKNHQISVAVNQKIAQLLIENQAMTHIAHRLSISTSSVMRKLNEFKFETDWNTLPEVMSWDEYSFKKGKMSFIAQDFNSLNVITILDG
RTQATIRNHFLRYPRKVRNQVKVITMDMFSPYYQLAKQLFPNAKIVLDRFHIVQHLSRAMNRIRIQIMNQFDRTSQEYRALKRYWKLIQQDSRKLSDKRF
YRPMFRMHLTNKEILEKLLSFSEELRQHYELYQLLLFHFQEKNSDHFFDIVELEIATVNPIFQTVFKTFLKDKDKVLNALELPYSNAKLEATNNLIKVIK
RNAFGFRNFENFKKRILIALNIKKERTKFVLSRC

 

Blast result :
Comments
ISSsu6 is 92% aa similar to ISSth1.
References
1] ISfinder submission (2017)
2] Lakkitjaroen,N., Takamatsu,D., Okura,M., Sato,M., Osaki,M. and Sekizaki,T. (2011) J. Med. Microbiol. 60 (PT 11), 1669-1676.
3] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2 (3), E315.