ISClsp5

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FMGV01000009 ND Clostridium sp.
Clostridium sp.
DNA section
IS Length : 1633 bp

Ends


IR Length : 24/28

IRL : GGCTCTGTTTTAGTATAGTGTTGATAATTGATTAAGATTTTAGATTTAGG
IRR : GGCTCTGTTTTAAAATAATGTTGACAATATATAGTAAGTTTAAAAGACCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAATAAATTTTAAAAATAAATTAAAAGG8

DNA sequence

GGCTCTGTTTTAGTATAGTGTTGATAATTGATTAAGATTTTAGATTTAGGGTATAATATAAGTATAAACAGTTGCGGAGGTTTAATTATGGAGAATGTAT
CATATCTATTATCAGAAATTCAAAAATTATCTTTATATAAACAAAAGCAGATTTTATCTAAATTAGAGGAAAATATTATGTTAGGTTCTCAAGTTACCGA
AATAACAAAAGAAGTAAAAGAAATGAGATTTTCTAAGGGGAAAGTATGCCCTCATTGTAATTGTGAAGATATATCAAGAAATGGTAAGTATAATGATAAG
CAAAGATATATTTGTAAAGATTGTGGGAAAACATTTACCGATTTTACTAACTCTGCAACATATAAAAGTAAGAAACCTTTAGATAAATGGATGAAATATG
CCAAATGTATGTTAAGTGGCTACTCTATAAGAAAATGTGCTGAAATAGTTGAAATAAATATAGCAACAAGTTTCTTTTGGAGGCATAAAATACTAAACTG
TATAAGTACATTTCTTGGAGTAGGTTCTGTTGATGGTGTTGTTGAAGCAGATGAAGTTTTCTTTGCTTATTCATATAAGGGAACTAAACCAGCTAATATG
CCAAGACCATCTCGTAAAAGAGGTAAGCAAGTTAAAAAGCGTGGTATAAGCAATGAGCAAGTATGTGTAGCCACAGCTCTTGATAGACAAAGAAATTTAA
TTATAGAATTATTATGTACTGGAAGAATGACATCTGATGAATTAAAGAAACTTTATAATAATCGTATAGGGGAAGATTCTATTCTCTGTACTGATAGCCA
CAAAAGCTATATGCAATTTGCAGAAGATATGGAATTAGAACATAAGAGAATTAAAAGAGGAAAACATAAAGAAGATATATACCATATTCAACATATAAAT
AGCCTTCATTCAAGTTTAAAAAGATGGATGAATAGGTTTAATGGTGTTGCAACAAAATATCTTGGAAATTATATGAAATGGTTTAAATGGATTGATACAT
TTAGTGCAGAAAAAGAATCTATCCAAATTAAAAGTTTTATGCTCCATAGCCATATACCTTATAGTTACACTAAAATAAAGGAATTTAAGAATAGAGTACC
AATTTTTGTTTAATGCGTTTCTTTTTATGGAATTATATACCGATATAGGTGTATAATAAAAATATACATTGTTACGCAATTGTATTTTTATACAAGTTAA
TTTATTATCAAAAAATTGTATAAAAAATAATTTGAGGGAGGAATCTATGGGATTTATAGATTTTTTATATTTTGGAGGTATAGGAATTATTTTTTGTATA
GTCCAGTTTTTAGTTTTACTTAAAATCAAAAAAAATTGGATTAAGTGGTTGCCTATAGCATTGACCATTTCTGGTTTATTATTTTGTTTGGTATTATATC
TTAATCTTTTTTGGACAAATTCATCAAGTGTAATTGCTGAAAATCAATATTTTTCTTTATTCCTTTTAAAGCCTATTAGTCTTTCATTCATAGGTTGTTT
ATTAGGATTCATTATTTATAAGTTATATAAGTTTTGTAAATAATATTAATCTATTACTAACTAAAGACCAGTGATTCAATCACTGGTCTTTTAAACTTAC
TATATATTGTCAACATTATTTTAAAACAGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa881113+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MENVSYLLSEIQKLSLYKQKQILSKLEENIMLGSQVTEITKEVKEMRFSKGKVCPHCNCEDISRNGKYNDKQRYICKDCGKTFTDFTNSATYKSKKPLDK
WMKYAKCMLSGYSIRKCAEIVEINIATSFFWRHKILNCISTFLGVGSVDGVVEADEVFFAYSYKGTKPANMPRPSRKRGKQVKKRGISNEQVCVATALDR
QRNLIIELLCTGRMTSDELKKLYNNRIGEDSILCTDSHKSYMQFAEDMELEHKRIKRGKHKEDIYHIQHINSLHSSLKRWMNRFNGVATKYLGNYMKWFK
WIDTFSAEKESIQIKSFMLHSHIPYSYTKIKEFKNRVPIFV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
297 bp97 aa12471543+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MGFIDFLYFGGIGIIFCIVQFLVLLKIKKNWIKWLPIALTISGLLFCLVLYLNLFWTNSSSVIAENQYFSLFLLKPISLSFIGCLLGFIIYKLYKFC

 

Blast result :
Comments
ISClsp5 is 83% aa (transposase) similar to ISCac2.
References
1] ISfinder annotation (2017)
2] Pathogen Informatics. WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom (2015) Direct GenBank submission.