ISPaen4

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNSW01000001 ND Paenibacillus sp.
Paenibacillus sp. GP183
DNA section
IS Length : 1936 bp

Ends


IR Length : 24/31

IRL : GGCTATGTTAATTCTTAATGTTGATATTTGATATATACGAACAAATGATC
IRR : GGCTCTGTTTTCGTTTAATGTTGATTTTTGACTGAAAGAAAACCGCCAAC

Insertion site


Left flankDirect repeatRight flankDR Length
CTCCTGCCGCTTTTCTTTAAAAAATGATA8

DNA sequence

GGCTATGTTAATTCTTAATGTTGATATTTGATATATACGAACAAATGATCTATAATTGTGGGTATAATCATAGTTCGGAGATGATTTACTTATGGATTTA
AAGGAATTGAAGAAGCTCGCTGACGCTTTAGACGATAGTTGTAAGCAAGAACTTATATACTTTTTGCAATCTCGAACGAAAAGCTTAGCGGCTCCAAATC
GTGCAATTGATGAAATCCAGGAACAAAAGCATAAAGATGGGCTTGTTTGTCCGCATTGCAACAATCATTCAGTTGTGCGGTTTGGAAAATACGTTATTAA
GACACGTACTGGGGAGGTCAAACGGCAACGTTACCGCTGTAAATCCTGCCGTCAAACCTTCAACGACCTCACCAACACCCCTCTTCAACGCACCAGAAGA
CCTCACCTTTGGGTTCGATTCATCGAATGTATGATTGAGGGTTTTTCACTGAGGAAATGTGCCGAACTGTTGCATGATGAGGTAACTCATGTAACCCTGT
TTTACTGGAGGCATAAGATTCTTGCCGCTCTGAAACAAATTCCAACCGAAACATTCCAGGGCATCGTCGAAATGGATGAGACCTATTTCTTGTTCTCTGA
AAAAGGCAAACGGACTATCGCTGACCGCAAGTCCCGTAAACGTGGTGGCAAAGCTAAATATCGTGGCATCAGTAACGACCAAATATGTGTATTGGTGGCT
CGTGACCGTCAAAAGATGACTTTCTCTGGCGTTCTTGGACGTGGACGTATTCGGAAAGCTAAATTGGATGAGGCTATCGGCTGTCATTTAACCGAATCAA
ACGTACTTTGTACCGATTCATGGAGGGCATTCAGTTCCTATGCGAATACGAAAGGATTAGCCCATTACCGCTTCAAGTCGGATGGGAAACAACGTGTTAA
AGGAGTTTACCACATTCAGAATGTAAACAACTATCATAGTCGGTTGAAACGCTGGATTTACCGCTTTAATGGTGTAGCAACCAAGTATTTACAACATTAT
CTGGCTTGGTTCCGTTACTTAACAGCAAGGAATATGAGAACACAACGTCGAATAAGAAAAATATGCTGGTCACCTCTTGCCTGTTTACTGTACATGAGAC
AAACACCAATCTTCGCAGAACATCTTTTTCCTCCTAAACTAACTGGCAGATAGATCAATGTTAATATCTGCGGTACAAATGTGTACATATAGATACGCCT
GATTAAACCGCTATAAGATGCCAAAGGTCATAATGGCTTTAGAATAAATGATTTCAATGATTTTAAGGGGGGCTCAACCCTTCTGTTGTCTTTAAATAGA
ATAAGGAGTTGTTACGTTAGATGAAACAGATTACTCTTCGCCAATCCCAAAATTCCGATGTTGAGACAATTGCTAATTTACGGGCAATTGTACTACGTAA
TGATTTAACTAGGTTAGGAAGGTTTGATGAAGAGAAAGTTCGGCAACGCTTCCGTAATGCATTTGACTCAGTTCATACTTGGATCATCGAGGCAGATTCT
TCTTTTGTTGGCTGCATAGCTTTTAAACCGACATTAGATGGTTATTTATTGGAACATTTTTATATTCATCCCAATTACCAAGGTAAAGGGGTCGGCAGTC
AAGTATTAAAAAATCTGCTTGAACAAAATTATGTAAAAGGAAAACGTGTAACATTAAATGTCCTACAAGGAAGCTCTGCTAGACGTCTTTATGAACGGTT
TGGTTTTAAAGTTGAAAGTGAGGATCTTATAGACGTTTACATGTCTGTGATTGTAGAGGAAAATTCCAGAACCGTCGAAGGATTGTAATACTGCTCTCTC
TAAAGTGGAATATTCGCTAACTTGAATCACAATAAAGGTGTTGGTTATTACGATGGAAAACGATAGTTAGATTAACCACCTTTTCAGTTGGCGGTTTTCT
TTCAGTCAAAAATCAACATTAAACGAAAACAGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1062 bp353 aa921153+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDLKELKKLADALDDSCKQELIYFLQSRTKSLAAPNRAIDEIQEQKHKDGLVCPHCNNHSVVRFGKYVIKTRTGEVKRQRYRCKSCRQTFNDLTNTPLQR
TRRPHLWVRFIECMIEGFSLRKCAELLHDEVTHVTLFYWRHKILAALKQIPTETFQGIVEMDETYFLFSEKGKRTIADRKSRKRGGKAKYRGISNDQICV
LVARDRQKMTFSGVLGRGRIRKAKLDEAIGCHLTESNVLCTDSWRAFSSYANTKGLAHYRFKSDGKQRVKGVYHIQNVNNYHSRLKRWIYRFNGVATKYL
QHYLAWFRYLTARNMRTQRRIRKICWSPLACLLYMRQTPIFAEHLFPPKLTGR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
468 bp155 aa13211788+No
ORF function : Passenger Gene
Annotation : N-acetylglutamate synthase, GNAT familyDescription :

ORF sequence :

MKQITLRQSQNSDVETIANLRAIVLRNDLTRLGRFDEEKVRQRFRNAFDSVHTWIIEADSSFVGCIAFKPTLDGYLLEHFYIHPNYQGKGVGSQVLKNLL
EQNYVKGKRVTLNVLQGSSARRLYERFGFKVESEDLIDVYMSVIVEENSRTVEGL

 

Blast result :
Comments
ISPaen4 is 77% aa similar to ISLca5.
References
1] ISfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.