ISDeul1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ATHV01000065 ND Desulfovibrio sp.
Desulfovibrio sp. X2
DNA section
IS Length : 1482 bp

Ends


IR Length : 23/25

IRL : GGCGCTGTATAAAAAGGTTGTTGCTTTTTGGATAGGTCCCTGGCAGGATT
IRR : GGCGCTGTATGTAAAGGTTGTTGCTAACGTCTTGACAATATCCATTGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGCACGGCTTTTGTAGAAAAGGACAGGG8

DNA sequence

GGCGCTGTATAAAAAGGTTGTTGCTTTTTGGATAGGTCCCTGGCAGGATTGAAAGTTCGTGCCTGACCAGGGGGAAGGGAATGGAACTAGATAGACTCCT
TTTAGTATTCCAAAGCCTTGACGAACACAAGCAGAAACTTTTCATCCGGCGGGCGCAGGAGCTGCTCCTGGCGGGACGCGGCTTCGGGTCGTATCTGACC
GCGATGCGGGAAGGACGCTTCAAGGACGGGCTGGTCTGCCCGCATTGCGGCGGTCACAGGGTCAAGCGCAACGGCATGTACAAGCGGACCCCGGACAAGC
CGGGACAGCGCGGAAAAGGCCCGTGGGTGCCCAGGCAGCGCTACCTGTGCGCTGATTGCCGCAAGACCTTCAACGACCTGACCGCAAGCCCCATCGAAGG
GTCCTGGTACGCGGACAAGTGGCCGCGTTACATCACCTTGATGTTCAAGGGGCTCACCCTGCGCGACGCGGCTGAAGAACTGGGCATCTGCCACACCACC
GCGTTCTTCTGGCGGCACAAGATTCTGCGGGCCGTGGCCACCCTGGACGTCGGCAAGATGCTGGAAGGCGTGGTCGAGGCCGATGAGACCTTCTTCCTGG
AATCCTTCAAGGGCAAGCGTGACCTGACGAAGCGGCCACCGCGCAAACGCGGCGGAAAGGCCGGGAAACGGGGCATATCCAGCGAACAGATAGCAGTTCT
CGCTGCCGTGGATCGCTCCGGCGGCATCGTCTGCCGCATGGCCGGCCGGGGCCGGATTTCCGCGTCGCAGATAGGCGCGGTGCTAAGCCCGCGCATGGAC
GACGATTCGACCCTGGTCACGGATCAGGCCACGACCTTCGCCAAATTCGCAGCCGACCGTGGGCTGCCCATCAAGCAGCTGAACACCAAGCGCAAGGTCT
ACAAGGACGGCATCTTCCACATCCAGCACGTCAACGGCTACCACAGCCGCCTGAAAGGCTGGATGCAGCGCTTTCGCGGCGTGGCGACCAGTTACCTGGA
CCACTACCTGGCGTGGTTCAGGCTGCTCGAACTGACCAAGGCGATGCAGGGGACAGAACGCCTGACTGCCGCCCTGTGCGATGCCGTCAGCCCCATGCTG
GTCACGCGCCGGGCATCGTTCCCCTTCCCCGAAGTCCCCTAGCCGTCCTGGATGGCTTTCAGCGCGTCGCCCAAAAGCTGACGCGCCTTGGCGCGGGCAG
CGGCACCGATTTCCGGAATGCTGCCCATACTGCCGACAGCAAGTGGGACTTCTACCGACAAGCTGGGATGAGCCCCCGTCTCGTCAGGTTCTTCGCACCA
AAATTGCACGGTGGCCCAGATGAAATCCAAGTCTTCTGGAAGTGGGCTTTGGACCGTGGCTTTCGTGGTGATTTTGAACGGACCTGCCATACCTAGCCTC
CCATTGATGTGGGTTTTCTAGGCATGTCTATCACTCAATGGATATTGTCAAGACGTTAGCAACAACCTTTACATACAGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1062 bp353 aa811142+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELDRLLLVFQSLDEHKQKLFIRRAQELLLAGRGFGSYLTAMREGRFKDGLVCPHCGGHRVKRNGMYKRTPDKPGQRGKGPWVPRQRYLCADCRKTFNDL
TASPIEGSWYADKWPRYITLMFKGLTLRDAAEELGICHTTAFFWRHKILRAVATLDVGKMLEGVVEADETFFLESFKGKRDLTKRPPRKRGGKAGKRGIS
SEQIAVLAAVDRSGGIVCRMAGRGRISASQIGAVLSPRMDDDSTLVTDQATTFAKFAADRGLPIKQLNTKRKVYKDGIFHIQHVNGYHSRLKGWMQRFRG
VATSYLDHYLAWFRLLELTKAMQGTERLTAALCDAVSPMLVTRRASFPFPEVP

 

Blast result :
Comments
ISDeul1 is 66% aa similar to ISOpi1.
References
1] ISfinder annotation (2016)
2] Brown,S.D., Hurt,R.A. Jr., Gilmour,C.C. and Elias,D.A. (2013) Genome Announc 1 (4), e00618-13.