ISDeul1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ATHV01000065 | ND | Desulfovibrio sp. | Desulfovibrio sp. X2 |
DNA section
IS Length : 1482 bp
Ends
IR Length : 23/25
IRL : GGCGCTGTATAAAAAGGTTGTTGCTTTTTGGATAGGTCCCTGGCAGGATT
IRR : GGCGCTGTATGTAAAGGTTGTTGCTAACGTCTTGACAATATCCATTGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGCACGGCTT | TTGTAGAA | AAGGACAGGG | 8 |
DNA sequence
GGCGCTGTATAAAAAGGTTGTTGCTTTTTGGATAGGTCCCTGGCAGGATTGAAAGTTCGTGCCTGACCAGGGGGAAGGGAATGGAACTAGATAGACTCCT
TTTAGTATTCCAAAGCCTTGACGAACACAAGCAGAAACTTTTCATCCGGCGGGCGCAGGAGCTGCTCCTGGCGGGACGCGGCTTCGGGTCGTATCTGACC
GCGATGCGGGAAGGACGCTTCAAGGACGGGCTGGTCTGCCCGCATTGCGGCGGTCACAGGGTCAAGCGCAACGGCATGTACAAGCGGACCCCGGACAAGC
CGGGACAGCGCGGAAAAGGCCCGTGGGTGCCCAGGCAGCGCTACCTGTGCGCTGATTGCCGCAAGACCTTCAACGACCTGACCGCAAGCCCCATCGAAGG
GTCCTGGTACGCGGACAAGTGGCCGCGTTACATCACCTTGATGTTCAAGGGGCTCACCCTGCGCGACGCGGCTGAAGAACTGGGCATCTGCCACACCACC
GCGTTCTTCTGGCGGCACAAGATTCTGCGGGCCGTGGCCACCCTGGACGTCGGCAAGATGCTGGAAGGCGTGGTCGAGGCCGATGAGACCTTCTTCCTGG
AATCCTTCAAGGGCAAGCGTGACCTGACGAAGCGGCCACCGCGCAAACGCGGCGGAAAGGCCGGGAAACGGGGCATATCCAGCGAACAGATAGCAGTTCT
CGCTGCCGTGGATCGCTCCGGCGGCATCGTCTGCCGCATGGCCGGCCGGGGCCGGATTTCCGCGTCGCAGATAGGCGCGGTGCTAAGCCCGCGCATGGAC
GACGATTCGACCCTGGTCACGGATCAGGCCACGACCTTCGCCAAATTCGCAGCCGACCGTGGGCTGCCCATCAAGCAGCTGAACACCAAGCGCAAGGTCT
ACAAGGACGGCATCTTCCACATCCAGCACGTCAACGGCTACCACAGCCGCCTGAAAGGCTGGATGCAGCGCTTTCGCGGCGTGGCGACCAGTTACCTGGA
CCACTACCTGGCGTGGTTCAGGCTGCTCGAACTGACCAAGGCGATGCAGGGGACAGAACGCCTGACTGCCGCCCTGTGCGATGCCGTCAGCCCCATGCTG
GTCACGCGCCGGGCATCGTTCCCCTTCCCCGAAGTCCCCTAGCCGTCCTGGATGGCTTTCAGCGCGTCGCCCAAAAGCTGACGCGCCTTGGCGCGGGCAG
CGGCACCGATTTCCGGAATGCTGCCCATACTGCCGACAGCAAGTGGGACTTCTACCGACAAGCTGGGATGAGCCCCCGTCTCGTCAGGTTCTTCGCACCA
AAATTGCACGGTGGCCCAGATGAAATCCAAGTCTTCTGGAAGTGGGCTTTGGACCGTGGCTTTCGTGGTGATTTTGAACGGACCTGCCATACCTAGCCTC
CCATTGATGTGGGTTTTCTAGGCATGTCTATCACTCAATGGATATTGTCAAGACGTTAGCAACAACCTTTACATACAGCGCC
TTTAGTATTCCAAAGCCTTGACGAACACAAGCAGAAACTTTTCATCCGGCGGGCGCAGGAGCTGCTCCTGGCGGGACGCGGCTTCGGGTCGTATCTGACC
GCGATGCGGGAAGGACGCTTCAAGGACGGGCTGGTCTGCCCGCATTGCGGCGGTCACAGGGTCAAGCGCAACGGCATGTACAAGCGGACCCCGGACAAGC
CGGGACAGCGCGGAAAAGGCCCGTGGGTGCCCAGGCAGCGCTACCTGTGCGCTGATTGCCGCAAGACCTTCAACGACCTGACCGCAAGCCCCATCGAAGG
GTCCTGGTACGCGGACAAGTGGCCGCGTTACATCACCTTGATGTTCAAGGGGCTCACCCTGCGCGACGCGGCTGAAGAACTGGGCATCTGCCACACCACC
GCGTTCTTCTGGCGGCACAAGATTCTGCGGGCCGTGGCCACCCTGGACGTCGGCAAGATGCTGGAAGGCGTGGTCGAGGCCGATGAGACCTTCTTCCTGG
AATCCTTCAAGGGCAAGCGTGACCTGACGAAGCGGCCACCGCGCAAACGCGGCGGAAAGGCCGGGAAACGGGGCATATCCAGCGAACAGATAGCAGTTCT
CGCTGCCGTGGATCGCTCCGGCGGCATCGTCTGCCGCATGGCCGGCCGGGGCCGGATTTCCGCGTCGCAGATAGGCGCGGTGCTAAGCCCGCGCATGGAC
GACGATTCGACCCTGGTCACGGATCAGGCCACGACCTTCGCCAAATTCGCAGCCGACCGTGGGCTGCCCATCAAGCAGCTGAACACCAAGCGCAAGGTCT
ACAAGGACGGCATCTTCCACATCCAGCACGTCAACGGCTACCACAGCCGCCTGAAAGGCTGGATGCAGCGCTTTCGCGGCGTGGCGACCAGTTACCTGGA
CCACTACCTGGCGTGGTTCAGGCTGCTCGAACTGACCAAGGCGATGCAGGGGACAGAACGCCTGACTGCCGCCCTGTGCGATGCCGTCAGCCCCATGCTG
GTCACGCGCCGGGCATCGTTCCCCTTCCCCGAAGTCCCCTAGCCGTCCTGGATGGCTTTCAGCGCGTCGCCCAAAAGCTGACGCGCCTTGGCGCGGGCAG
CGGCACCGATTTCCGGAATGCTGCCCATACTGCCGACAGCAAGTGGGACTTCTACCGACAAGCTGGGATGAGCCCCCGTCTCGTCAGGTTCTTCGCACCA
AAATTGCACGGTGGCCCAGATGAAATCCAAGTCTTCTGGAAGTGGGCTTTGGACCGTGGCTTTCGTGGTGATTTTGAACGGACCTGCCATACCTAGCCTC
CCATTGATGTGGGTTTTCTAGGCATGTCTATCACTCAATGGATATTGTCAAGACGTTAGCAACAACCTTTACATACAGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1062 bp | 353 aa | 81 | 1142 | + | No |
Chemistry : DDE
ORF sequence :
MELDRLLLVFQSLDEHKQKLFIRRAQELLLAGRGFGSYLTAMREGRFKDGLVCPHCGGHRVKRNGMYKRTPDKPGQRGKGPWVPRQRYLCADCRKTFNDL
TASPIEGSWYADKWPRYITLMFKGLTLRDAAEELGICHTTAFFWRHKILRAVATLDVGKMLEGVVEADETFFLESFKGKRDLTKRPPRKRGGKAGKRGIS
SEQIAVLAAVDRSGGIVCRMAGRGRISASQIGAVLSPRMDDDSTLVTDQATTFAKFAADRGLPIKQLNTKRKVYKDGIFHIQHVNGYHSRLKGWMQRFRG
VATSYLDHYLAWFRLLELTKAMQGTERLTAALCDAVSPMLVTRRASFPFPEVP
TASPIEGSWYADKWPRYITLMFKGLTLRDAAEELGICHTTAFFWRHKILRAVATLDVGKMLEGVVEADETFFLESFKGKRDLTKRPPRKRGGKAGKRGIS
SEQIAVLAAVDRSGGIVCRMAGRGRISASQIGAVLSPRMDDDSTLVTDQATTFAKFAADRGLPIKQLNTKRKVYKDGIFHIQHVNGYHSRLKGWMQRFRG
VATSYLDHYLAWFRLLELTKAMQGTERLTAALCDAVSPMLVTRRASFPFPEVP
Blast result :
Comments
ISDeul1 is 66% aa similar to ISOpi1.
References
1] ISfinder annotation (2016)
2] Brown,S.D., Hurt,R.A. Jr., Gilmour,C.C. and Elias,D.A. (2013) Genome Announc 1 (4), e00618-13.
2] Brown,S.D., Hurt,R.A. Jr., Gilmour,C.C. and Elias,D.A. (2013) Genome Announc 1 (4), e00618-13.