ISSpgl1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LGUF01000007 ND Sporosarcina globispora
Sporosarcina globispora DSM 4
DNA section
IS Length : 1842 bp

Ends


IR Length : 22/25

IRL : GGCTGTTTTCGTATAGATTGTTGCTTTCTTGACCAAGCTGATTATTGCTT
IRR : GGCTGTTTTCTAAAAGATTGTTGCTAATTAAAGATTTAATCTTAAAGGCA

Insertion site


Left flankDirect repeatRight flankDR Length
AGTCAGTTTTAATAAAAAAAGACACGTTCT8

DNA sequence

GGCTGTTTTCGTATAGATTGTTGCTTTCTTGACCAAGCTGATTATTGCTTGATATAATCGACTTTCTGGAGGGGAACATACGTGTGGAAAAGTGTTTATG
AAGAATTCAGTGATTTAAAAAAATCGGAACAGATGGCTTTATTTAATGCGATGAAGCAGGACTTGTTCCCTGACGAACCTAACAAGATAACCAAACTACT
AAAAAGAATTCGTGAAGCTCGTTTTAGCGGAGGTTTAGCCTGTGTTCATTGCGGTTGCGCATCTGTTAAGAGAAACGGAAAATACCGCACAAGGCAGCGG
TATCTCTGTAAAGATTGCGGCAAGAGCTTTAACGATATGACGCATACTCCGTTTTCAGGCAGTCGATATCCTGAAAAATGGGTCAAATATATCGAGTTGA
TGGTAGAAGGTTATACCTTACCTAAAATCGCTGAAAAACTTAAAATACACATTTCTACTGCGTTCTATTGGAGGCACAAAGTCCTGAACGCTTTAAGTTC
CATCGGATTTCAAGAGCTCTCTGGAATCGTTGAGAGCGATGAAACATTCTTTAAAGAGTCTATGAAAGGTAGAAAAATCTTTCATCGGGAAGCAAAAGAA
CGTGGCGGAAGAGACAGTAAACGAGGCATTTCTAATCTTAAAATTGCCGTAGTAGTTGCACAAGACCGCAACGGTAATGTAGTTGCCCGTAAAGCTGGAA
ATGGTCGTGTTAAAGCAGAAGAGATTGACGTTGTATTGGGAGACTATATTCATCCCTCTGCTTTGTTATGCACGGATACAGCTACTAACTATAAAAAGTT
TGCGAAAATCAAAGGTTTGCAGCACGAGACTATCAATGAGCGGCAGAAGGAAAGAGTGAAAAAAGGCATCTACCACGTCCAACACGTTAACAATTTTCAT
AAACGATTGAAAGACTGGATGGACCGTTTTTTAGGCGTTGCCACCAAATACCTTGATAACTACCTATACTGGTTCAGATGGCTAGAAATCGGAAAGAAAA
TGGCATTTGAAAATCGGGTTGAGCAAATGCTTATTTCTGCTTGTCAAAAACCTAATTATTATACGGTCGAAAAGCTTAGACTCTTGTAAATAATAGTTTT
TTATAAGGTTTTTTACAATATATGTTAAAATGTTTATAGGTATTTTTTTAGTTCAAAAATTGAAAAATACGAAAATAGTAGAATGATAAAAAGGAGAGAA
TTAAATGTTTCCTATACTAGAAACAGATAGACTGTTATTGAGAGAAATTAATAAAGAAGATGCAGAGGGTATATTTGCTTGTTTTTCAAACAGTGATGTA
ACACGTTTCTATGGACAAGAAACATTGGAAAGCATAGAAGAAGCAGAAAAATTTGTTGATTTCTTTTCAAAAAACTACAATGAAAAAAGAGGCATACGTT
GGGGAATTGAAAGAAAAGACATAAAAGGAATAATAGGAACGATAGGTTTTAATGCTTGGATACCCAAACATAAACGAGCTGAAATTGGTTATGAAATGCA
TCCTGGACATTGGAGAAAAGGATATACTACGGAAGCAGTATCGAAAGTTATTTCATATGGATTCGAAGAAATGGGATTAACTCGAATTGGAGCTGTTGTT
TTTATTGAAAACGAAGCGTCAAATAAGTTATTAACAAAAAAGGGGTTCGAAAAGGAAGGTATCTTGAAAGGTTATATGTATCAAAATGGAATAGCCCACG
ATACGTTTGTTTATTCACTTCTTAAAAAATGAATTTCGTTCCACAAAAGGGAAATTATAAAATGATTTAAGGCATACTCTTTGTCCAGGGTATGCCTTTA
AGATTAAATCTTTAATTAGCAACAATCTTTTAGAAAACAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1008 bp335 aa821089+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MWKSVYEEFSDLKKSEQMALFNAMKQDLFPDEPNKITKLLKRIREARFSGGLACVHCGCASVKRNGKYRTRQRYLCKDCGKSFNDMTHTPFSGSRYPEKW
VKYIELMVEGYTLPKIAEKLKIHISTAFYWRHKVLNALSSIGFQELSGIVESDETFFKESMKGRKIFHREAKERGGRDSKRGISNLKIAVVVAQDRNGNV
VARKAGNGRVKAEEIDVVLGDYIHPSALLCTDTATNYKKFAKIKGLQHETINERQKERVKKGIYHVQHVNNFHKRLKDWMDRFLGVATKYLDNYLYWFRW
LEIGKKMAFENRVEQMLISACQKPNYYTVEKLRLL

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
528 bp175 aa12051732+No
ORF function : Passenger Gene
Annotation : AcetyltransferaseDescription :

ORF sequence :

MFPILETDRLLLREINKEDAEGIFACFSNSDVTRFYGQETLESIEEAEKFVDFFSKNYNEKRGIRWGIERKDIKGIIGTIGFNAWIPKHKRAEIGYEMHP
GHWRKGYTTEAVSKVISYGFEEMGLTRIGAVVFIENEASNKLLTKKGFEKEGILKGYMYQNGIAHDTFVYSLLKK

 

Blast result :
Comments
ISSpgl1 is 91% aa similar to ISBce21.
References
1] ISfinder annotation (2016)
2] Wang,J.P., Liu,B., Liu,G.H., Xiao,R.F., Zheng,X.F., Shi,H. and Ge,C.B. (2015) Genome Announc 3 (5), e01230-15.