ISSpgl1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LGUF01000007 | ND | Sporosarcina globispora | Sporosarcina globispora DSM 4 |
DNA section
IS Length : 1842 bp
Ends
IR Length : 22/25
IRL : GGCTGTTTTCGTATAGATTGTTGCTTTCTTGACCAAGCTGATTATTGCTT
IRR : GGCTGTTTTCTAAAAGATTGTTGCTAATTAAAGATTTAATCTTAAAGGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTCAGTTTTA | ATAAAAAA | AGACACGTTCT | 8 |
DNA sequence
GGCTGTTTTCGTATAGATTGTTGCTTTCTTGACCAAGCTGATTATTGCTTGATATAATCGACTTTCTGGAGGGGAACATACGTGTGGAAAAGTGTTTATG
AAGAATTCAGTGATTTAAAAAAATCGGAACAGATGGCTTTATTTAATGCGATGAAGCAGGACTTGTTCCCTGACGAACCTAACAAGATAACCAAACTACT
AAAAAGAATTCGTGAAGCTCGTTTTAGCGGAGGTTTAGCCTGTGTTCATTGCGGTTGCGCATCTGTTAAGAGAAACGGAAAATACCGCACAAGGCAGCGG
TATCTCTGTAAAGATTGCGGCAAGAGCTTTAACGATATGACGCATACTCCGTTTTCAGGCAGTCGATATCCTGAAAAATGGGTCAAATATATCGAGTTGA
TGGTAGAAGGTTATACCTTACCTAAAATCGCTGAAAAACTTAAAATACACATTTCTACTGCGTTCTATTGGAGGCACAAAGTCCTGAACGCTTTAAGTTC
CATCGGATTTCAAGAGCTCTCTGGAATCGTTGAGAGCGATGAAACATTCTTTAAAGAGTCTATGAAAGGTAGAAAAATCTTTCATCGGGAAGCAAAAGAA
CGTGGCGGAAGAGACAGTAAACGAGGCATTTCTAATCTTAAAATTGCCGTAGTAGTTGCACAAGACCGCAACGGTAATGTAGTTGCCCGTAAAGCTGGAA
ATGGTCGTGTTAAAGCAGAAGAGATTGACGTTGTATTGGGAGACTATATTCATCCCTCTGCTTTGTTATGCACGGATACAGCTACTAACTATAAAAAGTT
TGCGAAAATCAAAGGTTTGCAGCACGAGACTATCAATGAGCGGCAGAAGGAAAGAGTGAAAAAAGGCATCTACCACGTCCAACACGTTAACAATTTTCAT
AAACGATTGAAAGACTGGATGGACCGTTTTTTAGGCGTTGCCACCAAATACCTTGATAACTACCTATACTGGTTCAGATGGCTAGAAATCGGAAAGAAAA
TGGCATTTGAAAATCGGGTTGAGCAAATGCTTATTTCTGCTTGTCAAAAACCTAATTATTATACGGTCGAAAAGCTTAGACTCTTGTAAATAATAGTTTT
TTATAAGGTTTTTTACAATATATGTTAAAATGTTTATAGGTATTTTTTTAGTTCAAAAATTGAAAAATACGAAAATAGTAGAATGATAAAAAGGAGAGAA
TTAAATGTTTCCTATACTAGAAACAGATAGACTGTTATTGAGAGAAATTAATAAAGAAGATGCAGAGGGTATATTTGCTTGTTTTTCAAACAGTGATGTA
ACACGTTTCTATGGACAAGAAACATTGGAAAGCATAGAAGAAGCAGAAAAATTTGTTGATTTCTTTTCAAAAAACTACAATGAAAAAAGAGGCATACGTT
GGGGAATTGAAAGAAAAGACATAAAAGGAATAATAGGAACGATAGGTTTTAATGCTTGGATACCCAAACATAAACGAGCTGAAATTGGTTATGAAATGCA
TCCTGGACATTGGAGAAAAGGATATACTACGGAAGCAGTATCGAAAGTTATTTCATATGGATTCGAAGAAATGGGATTAACTCGAATTGGAGCTGTTGTT
TTTATTGAAAACGAAGCGTCAAATAAGTTATTAACAAAAAAGGGGTTCGAAAAGGAAGGTATCTTGAAAGGTTATATGTATCAAAATGGAATAGCCCACG
ATACGTTTGTTTATTCACTTCTTAAAAAATGAATTTCGTTCCACAAAAGGGAAATTATAAAATGATTTAAGGCATACTCTTTGTCCAGGGTATGCCTTTA
AGATTAAATCTTTAATTAGCAACAATCTTTTAGAAAACAGCC
AAGAATTCAGTGATTTAAAAAAATCGGAACAGATGGCTTTATTTAATGCGATGAAGCAGGACTTGTTCCCTGACGAACCTAACAAGATAACCAAACTACT
AAAAAGAATTCGTGAAGCTCGTTTTAGCGGAGGTTTAGCCTGTGTTCATTGCGGTTGCGCATCTGTTAAGAGAAACGGAAAATACCGCACAAGGCAGCGG
TATCTCTGTAAAGATTGCGGCAAGAGCTTTAACGATATGACGCATACTCCGTTTTCAGGCAGTCGATATCCTGAAAAATGGGTCAAATATATCGAGTTGA
TGGTAGAAGGTTATACCTTACCTAAAATCGCTGAAAAACTTAAAATACACATTTCTACTGCGTTCTATTGGAGGCACAAAGTCCTGAACGCTTTAAGTTC
CATCGGATTTCAAGAGCTCTCTGGAATCGTTGAGAGCGATGAAACATTCTTTAAAGAGTCTATGAAAGGTAGAAAAATCTTTCATCGGGAAGCAAAAGAA
CGTGGCGGAAGAGACAGTAAACGAGGCATTTCTAATCTTAAAATTGCCGTAGTAGTTGCACAAGACCGCAACGGTAATGTAGTTGCCCGTAAAGCTGGAA
ATGGTCGTGTTAAAGCAGAAGAGATTGACGTTGTATTGGGAGACTATATTCATCCCTCTGCTTTGTTATGCACGGATACAGCTACTAACTATAAAAAGTT
TGCGAAAATCAAAGGTTTGCAGCACGAGACTATCAATGAGCGGCAGAAGGAAAGAGTGAAAAAAGGCATCTACCACGTCCAACACGTTAACAATTTTCAT
AAACGATTGAAAGACTGGATGGACCGTTTTTTAGGCGTTGCCACCAAATACCTTGATAACTACCTATACTGGTTCAGATGGCTAGAAATCGGAAAGAAAA
TGGCATTTGAAAATCGGGTTGAGCAAATGCTTATTTCTGCTTGTCAAAAACCTAATTATTATACGGTCGAAAAGCTTAGACTCTTGTAAATAATAGTTTT
TTATAAGGTTTTTTACAATATATGTTAAAATGTTTATAGGTATTTTTTTAGTTCAAAAATTGAAAAATACGAAAATAGTAGAATGATAAAAAGGAGAGAA
TTAAATGTTTCCTATACTAGAAACAGATAGACTGTTATTGAGAGAAATTAATAAAGAAGATGCAGAGGGTATATTTGCTTGTTTTTCAAACAGTGATGTA
ACACGTTTCTATGGACAAGAAACATTGGAAAGCATAGAAGAAGCAGAAAAATTTGTTGATTTCTTTTCAAAAAACTACAATGAAAAAAGAGGCATACGTT
GGGGAATTGAAAGAAAAGACATAAAAGGAATAATAGGAACGATAGGTTTTAATGCTTGGATACCCAAACATAAACGAGCTGAAATTGGTTATGAAATGCA
TCCTGGACATTGGAGAAAAGGATATACTACGGAAGCAGTATCGAAAGTTATTTCATATGGATTCGAAGAAATGGGATTAACTCGAATTGGAGCTGTTGTT
TTTATTGAAAACGAAGCGTCAAATAAGTTATTAACAAAAAAGGGGTTCGAAAAGGAAGGTATCTTGAAAGGTTATATGTATCAAAATGGAATAGCCCACG
ATACGTTTGTTTATTCACTTCTTAAAAAATGAATTTCGTTCCACAAAAGGGAAATTATAAAATGATTTAAGGCATACTCTTTGTCCAGGGTATGCCTTTA
AGATTAAATCTTTAATTAGCAACAATCTTTTAGAAAACAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1008 bp | 335 aa | 82 | 1089 | + | No |
Chemistry : DDE
ORF sequence :
MWKSVYEEFSDLKKSEQMALFNAMKQDLFPDEPNKITKLLKRIREARFSGGLACVHCGCASVKRNGKYRTRQRYLCKDCGKSFNDMTHTPFSGSRYPEKW
VKYIELMVEGYTLPKIAEKLKIHISTAFYWRHKVLNALSSIGFQELSGIVESDETFFKESMKGRKIFHREAKERGGRDSKRGISNLKIAVVVAQDRNGNV
VARKAGNGRVKAEEIDVVLGDYIHPSALLCTDTATNYKKFAKIKGLQHETINERQKERVKKGIYHVQHVNNFHKRLKDWMDRFLGVATKYLDNYLYWFRW
LEIGKKMAFENRVEQMLISACQKPNYYTVEKLRLL
VKYIELMVEGYTLPKIAEKLKIHISTAFYWRHKVLNALSSIGFQELSGIVESDETFFKESMKGRKIFHREAKERGGRDSKRGISNLKIAVVVAQDRNGNV
VARKAGNGRVKAEEIDVVLGDYIHPSALLCTDTATNYKKFAKIKGLQHETINERQKERVKKGIYHVQHVNNFHKRLKDWMDRFLGVATKYLDNYLYWFRW
LEIGKKMAFENRVEQMLISACQKPNYYTVEKLRLL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
528 bp | 175 aa | 1205 | 1732 | + | No |
Annotation : AcetyltransferaseDescription :
ORF sequence :
MFPILETDRLLLREINKEDAEGIFACFSNSDVTRFYGQETLESIEEAEKFVDFFSKNYNEKRGIRWGIERKDIKGIIGTIGFNAWIPKHKRAEIGYEMHP
GHWRKGYTTEAVSKVISYGFEEMGLTRIGAVVFIENEASNKLLTKKGFEKEGILKGYMYQNGIAHDTFVYSLLKK
GHWRKGYTTEAVSKVISYGFEEMGLTRIGAVVFIENEASNKLLTKKGFEKEGILKGYMYQNGIAHDTFVYSLLKK
Blast result :
Comments
ISSpgl1 is 91% aa similar to ISBce21.
References
1] ISfinder annotation (2016)
2] Wang,J.P., Liu,B., Liu,G.H., Xiao,R.F., Zheng,X.F., Shi,H. and Ge,C.B. (2015) Genome Announc 3 (5), e01230-15.
2] Wang,J.P., Liu,B., Liu,G.H., Xiao,R.F., Zheng,X.F., Shi,H. and Ge,C.B. (2015) Genome Announc 3 (5), e01230-15.