ISBci1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LDPH01000004 ND Bacillus circulans
Bacillus circulans RIT379
DNA section
IS Length : 1848 bp

Ends


IR Length : 27/31

IRL : CGCTGTTTTCGTATAGATTGTTGCTATTTGACCATGCTATAAATAGGTTG
IRR : CGCTGTTTTCGTAAGGATTGTTGTTATTAGATGAAAATTCCTGCTTCCTA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAACAATTAAAATAAAAAAGAAGGAAACCAAT8

DNA sequence

CGCTGTTTTCGTATAGATTGTTGCTATTTGACCATGCTATAAATAGGTTGATATAATGCCATATATGGAGGTGTTCAGAGATGTGGAGACACGTTTATCG
TGATTTTGGCGACCTATCAAAATCAGAGCAATTAGCGTTATTTGAAGCAATGAAACAAGACTTATTCCCTGAAGAACGAGAAGATATTGCGAAGATGCTA
AAAGATATTCGTGAAACTCGTTTTTCCAGTGGTTTGGCTTGCCTCCATTGTGGAAGCGTATCGGTCAAGAAGAATGGCAAATATCGTGCGAGACAACGAT
ATTTGTGCAAGGACTGTGGGAAGACATTTAACGATATGACCTATACTCCATTGGCAGGTTCTCGATACCCTCATAAATGGCTTAAATACTTTGATATGAT
GGTAGAAGGCTGTACACTACCTAAAATCTCCGAGGCTTTAGAAATCCATATTTCTACGGCTTTTTATTGGCGACATAAAATTTTGAATGCTCTCCGTTCA
TTGGGCAATCAAACTCTAAAAGGGATTGTTGAAAGCGATGAAACCTTTTTCTTGGAAAGTGACAAAGGGAAGAAGTCTATTACTGACAGAAAACCTCGTA
AGCGTGGCGGTGTCGCAACAAAACGAGGCATCTCGAAGGAACAGGTTTGCGTTCTTGTAGCACAAGACCGAAATGGACAAGTCATCTCTCAAATGGCTGG
GAAAGGGCGTATTAAATCGACCGATATTGATAAGGTGTTAGGAGGCTTTATTGACACTTCTGCTTTACTATGCTCTGATACAGCAACGAACTATAAGAAG
TTTGCCAAAGATAAGGGATTACAACACGAAATGGTCAATATGCGGAAAGGGATATATGTCAAAAAATCAATCTTCCATATTCAACACGTCAATGCCTATC
ACAAACGACTAAAACAATTTATGCACCGTTTTCAAGGTGTTGCAACCAAATATCTTGATAATTACCTCTTTTGGTTCAGATACCTTGAACAAAGCAAAAA
GGTGGCTCACAAAGAACGAGTGAACCAACTTTTATTTAGTGCTGTCCATAAATCAAACTATACGACAGTTGAGATGTTTAGAAGAAGTGCATAATAATAG
ACCTCTAATTCGAGGTCAATAAATTACTTTTCTATTGTGATATATTCATCATCCTTTAATCTCGTAACTTCGCATCCTTCAAGGATTTCAAATTCTTTTA
GTCTATCTTCAATTGTTTTGTTTGTACTATCTTTGAACAAATCTTCTCGGTCATAGTGAGGAAAAACAAGTTTGTCCGTAAAGTCTAATGCAGAAAAATC
CTTAGTATTTAATTCATCCATTTGTGGTGTGAAGAAATGAACGACTTTAATGTTTGGACCAAGTAGAATAGCACCAGCACTTACACCTACAATAACAACA
TTTTTGGCAACTAACTCTCGTAGGATTCTATCTGCCCCACTCTGTTTAGTATGAAATAATAAGTTAAATGGATTTCCACCATTGATGTATATGACATCTT
TATGTGCCAAACTTTCTGGGTTATCAAACTCTACATCAATGAAATCAATATATTGAAACCCCATATTCTTAAAGTCCTCTTTCGCCTTCTGAGCAAACCT
ATTATTATCCTTTTGCGGCGATGCAGTTGTGATAATAGCAACGTCTAGTTCGTTAGGTTCGCCGTTAATCAGTTTTAAAAACTGCTCTTTAATAGCAGCA
TTGTAAAAACCGTTAGAGGTTAGTAACAATTTCAAAATAATCAACCCCATTCTCTTCTCTATTGCGTTTAAGATATATCCTAATTTTAACAGAAAAAATA
GGAAGCAGGAATTTTCATCTAATAACAACAATCCTTACGAAAACAGCG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa811094+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MWRHVYRDFGDLSKSEQLALFEAMKQDLFPEEREDIAKMLKDIRETRFSSGLACLHCGSVSVKKNGKYRARQRYLCKDCGKTFNDMTYTPLAGSRYPHKW
LKYFDMMVEGCTLPKISEALEIHISTAFYWRHKILNALRSLGNQTLKGIVESDETFFLESDKGKKSITDRKPRKRGGVATKRGISKEQVCVLVAQDRNGQ
VISQMAGKGRIKSTDIDKVLGGFIDTSALLCSDTATNYKKFAKDKGLQHEMVNMRKGIYVKKSIFHIQHVNAYHKRLKQFMHRFQGVATKYLDNYLFWFR
YLEQSKKVAHKERVNQLLFSAVHKSNYTTVEMFRRSA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
627 bp208 aa17501124-No
ORF function : Passenger Gene
Annotation : Peptidase EDescription :

ORF sequence :

MGLIILKLLLTSNGFYNAAIKEQFLKLINGEPNELDVAIITTASPQKDNNRFAQKAKEDFKNMGFQYIDFIDVEFDNPESLAHKDVIYINGGNPFNLLFH
TKQSGADRILRELVAKNVVIVGVSAGAILLGPNIKVVHFFTPQMDELNTKDFSALDFTDKLVFPHYDREDLFKDSTNKTIEDRLKEFEILEGCEVTRLKD
DEYITIEK

 

Blast result :
Comments
ISBci1 is 78% (transposase) aa similar to ISBsp1.
References
1] ISfinder annotation (2016)
2] Polter,S.J., Caraballo,A.A., Lee,Y.P., Eng,W.W., Gan,H.M., Wheatley,M.S., Savka,M.A., Thomas,B.N. and Hudson,A.O. (2015) Genome Announc 3 (4), e00847-15.