ISBci1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LDPH01000004 | ND | Bacillus circulans | Bacillus circulans RIT379 |
DNA section
IS Length : 1848 bp
Ends
IR Length : 27/31
IRL : CGCTGTTTTCGTATAGATTGTTGCTATTTGACCATGCTATAAATAGGTTG
IRR : CGCTGTTTTCGTAAGGATTGTTGTTATTAGATGAAAATTCCTGCTTCCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAACAATTAA | AATAAAAA | AGAAGGAAACCAAT | 8 |
DNA sequence
CGCTGTTTTCGTATAGATTGTTGCTATTTGACCATGCTATAAATAGGTTGATATAATGCCATATATGGAGGTGTTCAGAGATGTGGAGACACGTTTATCG
TGATTTTGGCGACCTATCAAAATCAGAGCAATTAGCGTTATTTGAAGCAATGAAACAAGACTTATTCCCTGAAGAACGAGAAGATATTGCGAAGATGCTA
AAAGATATTCGTGAAACTCGTTTTTCCAGTGGTTTGGCTTGCCTCCATTGTGGAAGCGTATCGGTCAAGAAGAATGGCAAATATCGTGCGAGACAACGAT
ATTTGTGCAAGGACTGTGGGAAGACATTTAACGATATGACCTATACTCCATTGGCAGGTTCTCGATACCCTCATAAATGGCTTAAATACTTTGATATGAT
GGTAGAAGGCTGTACACTACCTAAAATCTCCGAGGCTTTAGAAATCCATATTTCTACGGCTTTTTATTGGCGACATAAAATTTTGAATGCTCTCCGTTCA
TTGGGCAATCAAACTCTAAAAGGGATTGTTGAAAGCGATGAAACCTTTTTCTTGGAAAGTGACAAAGGGAAGAAGTCTATTACTGACAGAAAACCTCGTA
AGCGTGGCGGTGTCGCAACAAAACGAGGCATCTCGAAGGAACAGGTTTGCGTTCTTGTAGCACAAGACCGAAATGGACAAGTCATCTCTCAAATGGCTGG
GAAAGGGCGTATTAAATCGACCGATATTGATAAGGTGTTAGGAGGCTTTATTGACACTTCTGCTTTACTATGCTCTGATACAGCAACGAACTATAAGAAG
TTTGCCAAAGATAAGGGATTACAACACGAAATGGTCAATATGCGGAAAGGGATATATGTCAAAAAATCAATCTTCCATATTCAACACGTCAATGCCTATC
ACAAACGACTAAAACAATTTATGCACCGTTTTCAAGGTGTTGCAACCAAATATCTTGATAATTACCTCTTTTGGTTCAGATACCTTGAACAAAGCAAAAA
GGTGGCTCACAAAGAACGAGTGAACCAACTTTTATTTAGTGCTGTCCATAAATCAAACTATACGACAGTTGAGATGTTTAGAAGAAGTGCATAATAATAG
ACCTCTAATTCGAGGTCAATAAATTACTTTTCTATTGTGATATATTCATCATCCTTTAATCTCGTAACTTCGCATCCTTCAAGGATTTCAAATTCTTTTA
GTCTATCTTCAATTGTTTTGTTTGTACTATCTTTGAACAAATCTTCTCGGTCATAGTGAGGAAAAACAAGTTTGTCCGTAAAGTCTAATGCAGAAAAATC
CTTAGTATTTAATTCATCCATTTGTGGTGTGAAGAAATGAACGACTTTAATGTTTGGACCAAGTAGAATAGCACCAGCACTTACACCTACAATAACAACA
TTTTTGGCAACTAACTCTCGTAGGATTCTATCTGCCCCACTCTGTTTAGTATGAAATAATAAGTTAAATGGATTTCCACCATTGATGTATATGACATCTT
TATGTGCCAAACTTTCTGGGTTATCAAACTCTACATCAATGAAATCAATATATTGAAACCCCATATTCTTAAAGTCCTCTTTCGCCTTCTGAGCAAACCT
ATTATTATCCTTTTGCGGCGATGCAGTTGTGATAATAGCAACGTCTAGTTCGTTAGGTTCGCCGTTAATCAGTTTTAAAAACTGCTCTTTAATAGCAGCA
TTGTAAAAACCGTTAGAGGTTAGTAACAATTTCAAAATAATCAACCCCATTCTCTTCTCTATTGCGTTTAAGATATATCCTAATTTTAACAGAAAAAATA
GGAAGCAGGAATTTTCATCTAATAACAACAATCCTTACGAAAACAGCG
TGATTTTGGCGACCTATCAAAATCAGAGCAATTAGCGTTATTTGAAGCAATGAAACAAGACTTATTCCCTGAAGAACGAGAAGATATTGCGAAGATGCTA
AAAGATATTCGTGAAACTCGTTTTTCCAGTGGTTTGGCTTGCCTCCATTGTGGAAGCGTATCGGTCAAGAAGAATGGCAAATATCGTGCGAGACAACGAT
ATTTGTGCAAGGACTGTGGGAAGACATTTAACGATATGACCTATACTCCATTGGCAGGTTCTCGATACCCTCATAAATGGCTTAAATACTTTGATATGAT
GGTAGAAGGCTGTACACTACCTAAAATCTCCGAGGCTTTAGAAATCCATATTTCTACGGCTTTTTATTGGCGACATAAAATTTTGAATGCTCTCCGTTCA
TTGGGCAATCAAACTCTAAAAGGGATTGTTGAAAGCGATGAAACCTTTTTCTTGGAAAGTGACAAAGGGAAGAAGTCTATTACTGACAGAAAACCTCGTA
AGCGTGGCGGTGTCGCAACAAAACGAGGCATCTCGAAGGAACAGGTTTGCGTTCTTGTAGCACAAGACCGAAATGGACAAGTCATCTCTCAAATGGCTGG
GAAAGGGCGTATTAAATCGACCGATATTGATAAGGTGTTAGGAGGCTTTATTGACACTTCTGCTTTACTATGCTCTGATACAGCAACGAACTATAAGAAG
TTTGCCAAAGATAAGGGATTACAACACGAAATGGTCAATATGCGGAAAGGGATATATGTCAAAAAATCAATCTTCCATATTCAACACGTCAATGCCTATC
ACAAACGACTAAAACAATTTATGCACCGTTTTCAAGGTGTTGCAACCAAATATCTTGATAATTACCTCTTTTGGTTCAGATACCTTGAACAAAGCAAAAA
GGTGGCTCACAAAGAACGAGTGAACCAACTTTTATTTAGTGCTGTCCATAAATCAAACTATACGACAGTTGAGATGTTTAGAAGAAGTGCATAATAATAG
ACCTCTAATTCGAGGTCAATAAATTACTTTTCTATTGTGATATATTCATCATCCTTTAATCTCGTAACTTCGCATCCTTCAAGGATTTCAAATTCTTTTA
GTCTATCTTCAATTGTTTTGTTTGTACTATCTTTGAACAAATCTTCTCGGTCATAGTGAGGAAAAACAAGTTTGTCCGTAAAGTCTAATGCAGAAAAATC
CTTAGTATTTAATTCATCCATTTGTGGTGTGAAGAAATGAACGACTTTAATGTTTGGACCAAGTAGAATAGCACCAGCACTTACACCTACAATAACAACA
TTTTTGGCAACTAACTCTCGTAGGATTCTATCTGCCCCACTCTGTTTAGTATGAAATAATAAGTTAAATGGATTTCCACCATTGATGTATATGACATCTT
TATGTGCCAAACTTTCTGGGTTATCAAACTCTACATCAATGAAATCAATATATTGAAACCCCATATTCTTAAAGTCCTCTTTCGCCTTCTGAGCAAACCT
ATTATTATCCTTTTGCGGCGATGCAGTTGTGATAATAGCAACGTCTAGTTCGTTAGGTTCGCCGTTAATCAGTTTTAAAAACTGCTCTTTAATAGCAGCA
TTGTAAAAACCGTTAGAGGTTAGTAACAATTTCAAAATAATCAACCCCATTCTCTTCTCTATTGCGTTTAAGATATATCCTAATTTTAACAGAAAAAATA
GGAAGCAGGAATTTTCATCTAATAACAACAATCCTTACGAAAACAGCG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 81 | 1094 | + | No |
Chemistry : DDE
ORF sequence :
MWRHVYRDFGDLSKSEQLALFEAMKQDLFPEEREDIAKMLKDIRETRFSSGLACLHCGSVSVKKNGKYRARQRYLCKDCGKTFNDMTYTPLAGSRYPHKW
LKYFDMMVEGCTLPKISEALEIHISTAFYWRHKILNALRSLGNQTLKGIVESDETFFLESDKGKKSITDRKPRKRGGVATKRGISKEQVCVLVAQDRNGQ
VISQMAGKGRIKSTDIDKVLGGFIDTSALLCSDTATNYKKFAKDKGLQHEMVNMRKGIYVKKSIFHIQHVNAYHKRLKQFMHRFQGVATKYLDNYLFWFR
YLEQSKKVAHKERVNQLLFSAVHKSNYTTVEMFRRSA
LKYFDMMVEGCTLPKISEALEIHISTAFYWRHKILNALRSLGNQTLKGIVESDETFFLESDKGKKSITDRKPRKRGGVATKRGISKEQVCVLVAQDRNGQ
VISQMAGKGRIKSTDIDKVLGGFIDTSALLCSDTATNYKKFAKDKGLQHEMVNMRKGIYVKKSIFHIQHVNAYHKRLKQFMHRFQGVATKYLDNYLFWFR
YLEQSKKVAHKERVNQLLFSAVHKSNYTTVEMFRRSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
627 bp | 208 aa | 1750 | 1124 | - | No |
Annotation : Peptidase EDescription :
ORF sequence :
MGLIILKLLLTSNGFYNAAIKEQFLKLINGEPNELDVAIITTASPQKDNNRFAQKAKEDFKNMGFQYIDFIDVEFDNPESLAHKDVIYINGGNPFNLLFH
TKQSGADRILRELVAKNVVIVGVSAGAILLGPNIKVVHFFTPQMDELNTKDFSALDFTDKLVFPHYDREDLFKDSTNKTIEDRLKEFEILEGCEVTRLKD
DEYITIEK
TKQSGADRILRELVAKNVVIVGVSAGAILLGPNIKVVHFFTPQMDELNTKDFSALDFTDKLVFPHYDREDLFKDSTNKTIEDRLKEFEILEGCEVTRLKD
DEYITIEK
Blast result :
Comments
ISBci1 is 78% (transposase) aa similar to ISBsp1.
References
1] ISfinder annotation (2016)
2] Polter,S.J., Caraballo,A.A., Lee,Y.P., Eng,W.W., Gan,H.M., Wheatley,M.S., Savka,M.A., Thomas,B.N. and Hudson,A.O. (2015) Genome Announc 3 (4), e00847-15.
2] Polter,S.J., Caraballo,A.A., Lee,Y.P., Eng,W.W., Gan,H.M., Wheatley,M.S., Savka,M.A., Thomas,B.N. and Hudson,A.O. (2015) Genome Announc 3 (4), e00847-15.