ISBsu3
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JXHM01000053 | ND | Bacillus subtilis | Bacillus subtilis B4070 |
DNA section
IS Length : 1723 bp
Ends
IR Length : 22/29
IRL : GGCTCTGTTAAAGAACATTGTTGATATTTGAAACCCAACCAAGTTCTTGC
IRR : GACTCTGTTAATGTTTAATGTTGATTTTTTCAATAAAATGTTAGGGAACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGTGCTTT | AATTTATA | AAAAAACCCG | 8 |
DNA sequence
GGCTCTGTTAAAGAACATTGTTGATATTTGAAACCCAACCAAGTTCTTGCTATAATTACAATTAGAACAAAGGTTCGGGAGTGTTAATGATGGACAAAGC
GTTCAGTAACCTATTAAAATACATCGACAAGTTACCCCATACTAAAAAGGAACAAGTATATCAATGGGTAAAACGTTATGTTGACCCGACCTCTTCCGTT
GGTGGTAGATTGATTAACGAAATAAGGGAAACTCGTTTTAAAGATGGTTTCGAGTGTCCCCATTGTACATCTGAACACGTTGTTCGATTCGGAAAAGTCA
AGGGTCGTCAACGGTATCGTTGTAAAAGTTGCCTTAAAACCTTTACGGATACGACTAACACCGTTCTTTATCGCACCCGAAAAGGTGATGAATGGATTAC
ATTTGTGGATTGTATGTTCAAAGGCTACTCCCTGCGTAAATCGGCTGAAATCGTAGGGGTTACTTGGGTTACACTTTTTTACTGGAGACATAAACTGCTA
TCCGCCTTAAAGCAAATGGATTTTGACCATTTTGAAGGTATCGTTGAAGTTGACGAGACCTATTTCTTGTACTCTCAAAAAGGGCAACGTGGCATTACAG
AACGGAAGCCTCGAAAACGTGGAGGAAAATCCAAACACAGAGGAATCAGCCACGAACAAGTATGTGTTCTTGTTGCAAGAGACCGTACAAAAGCAACCGT
CTCCAAAGTATCTTGTATGGGGCGTATTGTAAAAACCAAAATTGAAACTATCATTGGTACTAAACTATCGTCTGACAATGTGCTTGTTACAGATGCTTGG
AGAGCATACAAAACCTATGCAAAAGAAAAAGGATTAGAGCATTACCGAATCAAATCCGATGATGGAAAGCACGTTATAAAAGGCTTATATCACATTCAAA
ATGTCAACAGTTTTCATTCTCGGATGAAGAAGTGGATTGACCGTTTTAAAGGTGTGGCTACAAAATATCTTGATAATTACCTTGCTTGGTTCTTATTTGT
AGATAGCCGCAGTAACGAAAATACCAAGCAACATATAAAAGAGCTTCTGCTTACATCATTTGTATTTGAAATGACAGAAACTTTTGAAAGTCTCCGTCTA
TCTAAGTTCAGTGCTTAAAAAGGTCATTAACGGGCAATCGGCTTATAAATACTGGGAGAGGAGAACTCAATTTATGGAAATTAGAAAACCAAACGATTCG
GAATATAAAAAGGTTTTATCACTTTCACCACAAGCATTATTCGAAGGTACATTAGGCGAAGCAAAACTGTCAGATGAAAAAGTCAAACAACTTATTGAAC
CATTATTGCAGAAAGGAAGCTATTATTTGATAGCAACTGAAGGCGATAATCTAATGGGTTGGATTCTTATAGGAACAAGTAAAGACCAATTTACTGAAAA
GATATATGGATTTATTTATGAATTGTTTGTGTTAGAGGAATTTAGGGGAAATGGAATTTCAAAACAATTGATGGAAACTGGTATCGAACATCTTAAACAA
GATGGATATTCAGAGGTTCGCTTAAGTGTATATGCAGGAAATCAAGCGATTAAACTGTACGAAAAATTAGGATTCAAAAATAGAACCATTACAATGAGTA
TGAACATATAAAACAAACATCTTTATTGAATATCTAATAGACTGGTTTATTGAGAATTGGGGAACCAAAAGATGGTTCCCTAACATTTTATTGAAAAAAT
CAACATTAAACATTAACAGAGTC
GTTCAGTAACCTATTAAAATACATCGACAAGTTACCCCATACTAAAAAGGAACAAGTATATCAATGGGTAAAACGTTATGTTGACCCGACCTCTTCCGTT
GGTGGTAGATTGATTAACGAAATAAGGGAAACTCGTTTTAAAGATGGTTTCGAGTGTCCCCATTGTACATCTGAACACGTTGTTCGATTCGGAAAAGTCA
AGGGTCGTCAACGGTATCGTTGTAAAAGTTGCCTTAAAACCTTTACGGATACGACTAACACCGTTCTTTATCGCACCCGAAAAGGTGATGAATGGATTAC
ATTTGTGGATTGTATGTTCAAAGGCTACTCCCTGCGTAAATCGGCTGAAATCGTAGGGGTTACTTGGGTTACACTTTTTTACTGGAGACATAAACTGCTA
TCCGCCTTAAAGCAAATGGATTTTGACCATTTTGAAGGTATCGTTGAAGTTGACGAGACCTATTTCTTGTACTCTCAAAAAGGGCAACGTGGCATTACAG
AACGGAAGCCTCGAAAACGTGGAGGAAAATCCAAACACAGAGGAATCAGCCACGAACAAGTATGTGTTCTTGTTGCAAGAGACCGTACAAAAGCAACCGT
CTCCAAAGTATCTTGTATGGGGCGTATTGTAAAAACCAAAATTGAAACTATCATTGGTACTAAACTATCGTCTGACAATGTGCTTGTTACAGATGCTTGG
AGAGCATACAAAACCTATGCAAAAGAAAAAGGATTAGAGCATTACCGAATCAAATCCGATGATGGAAAGCACGTTATAAAAGGCTTATATCACATTCAAA
ATGTCAACAGTTTTCATTCTCGGATGAAGAAGTGGATTGACCGTTTTAAAGGTGTGGCTACAAAATATCTTGATAATTACCTTGCTTGGTTCTTATTTGT
AGATAGCCGCAGTAACGAAAATACCAAGCAACATATAAAAGAGCTTCTGCTTACATCATTTGTATTTGAAATGACAGAAACTTTTGAAAGTCTCCGTCTA
TCTAAGTTCAGTGCTTAAAAAGGTCATTAACGGGCAATCGGCTTATAAATACTGGGAGAGGAGAACTCAATTTATGGAAATTAGAAAACCAAACGATTCG
GAATATAAAAAGGTTTTATCACTTTCACCACAAGCATTATTCGAAGGTACATTAGGCGAAGCAAAACTGTCAGATGAAAAAGTCAAACAACTTATTGAAC
CATTATTGCAGAAAGGAAGCTATTATTTGATAGCAACTGAAGGCGATAATCTAATGGGTTGGATTCTTATAGGAACAAGTAAAGACCAATTTACTGAAAA
GATATATGGATTTATTTATGAATTGTTTGTGTTAGAGGAATTTAGGGGAAATGGAATTTCAAAACAATTGATGGAAACTGGTATCGAACATCTTAAACAA
GATGGATATTCAGAGGTTCGCTTAAGTGTATATGCAGGAAATCAAGCGATTAAACTGTACGAAAAATTAGGATTCAAAAATAGAACCATTACAATGAGTA
TGAACATATAAAACAAACATCTTTATTGAATATCTAATAGACTGGTTTATTGAGAATTGGGGAACCAAAAGATGGTTCCCTAACATTTTATTGAAAAAAT
CAACATTAAACATTAACAGAGTC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 87 | 1118 | + | No |
Chemistry : DDE
ORF sequence :
MMDKAFSNLLKYIDKLPHTKKEQVYQWVKRYVDPTSSVGGRLINEIRETRFKDGFECPHCTSEHVVRFGKVKGRQRYRCKSCLKTFTDTTNTVLYRTRKG
DEWITFVDCMFKGYSLRKSAEIVGVTWVTLFYWRHKLLSALKQMDFDHFEGIVEVDETYFLYSQKGQRGITERKPRKRGGKSKHRGISHEQVCVLVARDR
TKATVSKVSCMGRIVKTKIETIIGTKLSSDNVLVTDAWRAYKTYAKEKGLEHYRIKSDDGKHVIKGLYHIQNVNSFHSRMKKWIDRFKGVATKYLDNYLA
WFLFVDSRSNENTKQHIKELLLTSFVFEMTETFESLRLSKFSA
DEWITFVDCMFKGYSLRKSAEIVGVTWVTLFYWRHKLLSALKQMDFDHFEGIVEVDETYFLYSQKGQRGITERKPRKRGGKSKHRGISHEQVCVLVARDR
TKATVSKVSCMGRIVKTKIETIIGTKLSSDNVLVTDAWRAYKTYAKEKGLEHYRIKSDDGKHVIKGLYHIQNVNSFHSRMKKWIDRFKGVATKYLDNYLA
WFLFVDSRSNENTKQHIKELLLTSFVFEMTETFESLRLSKFSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
438 bp | 145 aa | 1174 | 1611 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MEIRKPNDSEYKKVLSLSPQALFEGTLGEAKLSDEKVKQLIEPLLQKGSYYLIATEGDNLMGWILIGTSKDQFTEKIYGFIYELFVLEEFRGNGISKQLM
ETGIEHLKQDGYSEVRLSVYAGNQAIKLYEKLGFKNRTITMSMNI
ETGIEHLKQDGYSEVRLSVYAGNQAIKLYEKLGFKNRTITMSMNI
Blast result :
Comments
ISBsu3 is 95% aa similar to ISBwe1.
References
1] ISfinder annotation (2016)
2] Heel,A., Eijlander,R.T. and Kuipers,O.P. (2016) Genome Announc 4 (2).
2] Heel,A., Eijlander,R.T. and Kuipers,O.P. (2016) Genome Announc 4 (2).