ISBsu3

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JXHM01000053 ND Bacillus subtilis
Bacillus subtilis B4070
DNA section
IS Length : 1723 bp

Ends


IR Length : 22/29

IRL : GGCTCTGTTAAAGAACATTGTTGATATTTGAAACCCAACCAAGTTCTTGC
IRR : GACTCTGTTAATGTTTAATGTTGATTTTTTCAATAAAATGTTAGGGAACC

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGTGCTTTAATTTATAAAAAAACCCG8

DNA sequence

GGCTCTGTTAAAGAACATTGTTGATATTTGAAACCCAACCAAGTTCTTGCTATAATTACAATTAGAACAAAGGTTCGGGAGTGTTAATGATGGACAAAGC
GTTCAGTAACCTATTAAAATACATCGACAAGTTACCCCATACTAAAAAGGAACAAGTATATCAATGGGTAAAACGTTATGTTGACCCGACCTCTTCCGTT
GGTGGTAGATTGATTAACGAAATAAGGGAAACTCGTTTTAAAGATGGTTTCGAGTGTCCCCATTGTACATCTGAACACGTTGTTCGATTCGGAAAAGTCA
AGGGTCGTCAACGGTATCGTTGTAAAAGTTGCCTTAAAACCTTTACGGATACGACTAACACCGTTCTTTATCGCACCCGAAAAGGTGATGAATGGATTAC
ATTTGTGGATTGTATGTTCAAAGGCTACTCCCTGCGTAAATCGGCTGAAATCGTAGGGGTTACTTGGGTTACACTTTTTTACTGGAGACATAAACTGCTA
TCCGCCTTAAAGCAAATGGATTTTGACCATTTTGAAGGTATCGTTGAAGTTGACGAGACCTATTTCTTGTACTCTCAAAAAGGGCAACGTGGCATTACAG
AACGGAAGCCTCGAAAACGTGGAGGAAAATCCAAACACAGAGGAATCAGCCACGAACAAGTATGTGTTCTTGTTGCAAGAGACCGTACAAAAGCAACCGT
CTCCAAAGTATCTTGTATGGGGCGTATTGTAAAAACCAAAATTGAAACTATCATTGGTACTAAACTATCGTCTGACAATGTGCTTGTTACAGATGCTTGG
AGAGCATACAAAACCTATGCAAAAGAAAAAGGATTAGAGCATTACCGAATCAAATCCGATGATGGAAAGCACGTTATAAAAGGCTTATATCACATTCAAA
ATGTCAACAGTTTTCATTCTCGGATGAAGAAGTGGATTGACCGTTTTAAAGGTGTGGCTACAAAATATCTTGATAATTACCTTGCTTGGTTCTTATTTGT
AGATAGCCGCAGTAACGAAAATACCAAGCAACATATAAAAGAGCTTCTGCTTACATCATTTGTATTTGAAATGACAGAAACTTTTGAAAGTCTCCGTCTA
TCTAAGTTCAGTGCTTAAAAAGGTCATTAACGGGCAATCGGCTTATAAATACTGGGAGAGGAGAACTCAATTTATGGAAATTAGAAAACCAAACGATTCG
GAATATAAAAAGGTTTTATCACTTTCACCACAAGCATTATTCGAAGGTACATTAGGCGAAGCAAAACTGTCAGATGAAAAAGTCAAACAACTTATTGAAC
CATTATTGCAGAAAGGAAGCTATTATTTGATAGCAACTGAAGGCGATAATCTAATGGGTTGGATTCTTATAGGAACAAGTAAAGACCAATTTACTGAAAA
GATATATGGATTTATTTATGAATTGTTTGTGTTAGAGGAATTTAGGGGAAATGGAATTTCAAAACAATTGATGGAAACTGGTATCGAACATCTTAAACAA
GATGGATATTCAGAGGTTCGCTTAAGTGTATATGCAGGAAATCAAGCGATTAAACTGTACGAAAAATTAGGATTCAAAAATAGAACCATTACAATGAGTA
TGAACATATAAAACAAACATCTTTATTGAATATCTAATAGACTGGTTTATTGAGAATTGGGGAACCAAAAGATGGTTCCCTAACATTTTATTGAAAAAAT
CAACATTAAACATTAACAGAGTC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa871118+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMDKAFSNLLKYIDKLPHTKKEQVYQWVKRYVDPTSSVGGRLINEIRETRFKDGFECPHCTSEHVVRFGKVKGRQRYRCKSCLKTFTDTTNTVLYRTRKG
DEWITFVDCMFKGYSLRKSAEIVGVTWVTLFYWRHKLLSALKQMDFDHFEGIVEVDETYFLYSQKGQRGITERKPRKRGGKSKHRGISHEQVCVLVARDR
TKATVSKVSCMGRIVKTKIETIIGTKLSSDNVLVTDAWRAYKTYAKEKGLEHYRIKSDDGKHVIKGLYHIQNVNSFHSRMKKWIDRFKGVATKYLDNYLA
WFLFVDSRSNENTKQHIKELLLTSFVFEMTETFESLRLSKFSA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
438 bp145 aa11741611+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MEIRKPNDSEYKKVLSLSPQALFEGTLGEAKLSDEKVKQLIEPLLQKGSYYLIATEGDNLMGWILIGTSKDQFTEKIYGFIYELFVLEEFRGNGISKQLM
ETGIEHLKQDGYSEVRLSVYAGNQAIKLYEKLGFKNRTITMSMNI

 

Blast result :
Comments
ISBsu3 is 95% aa similar to ISBwe1.
References
1] ISfinder annotation (2016)
2] Heel,A., Eijlander,R.T. and Kuipers,O.P. (2016) Genome Announc 4 (2).