ISBdb1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MEPZ01000017 | ND | Bdellovibrionales bacterium | Bdellovibrionales bacterium RIFOXYB1 |
DNA section
IS Length : 1073 bp
Ends
IR Length : 24/25
IRL : GGCTATGTTTAAGAAGATTGTGGCTAATTTAATACACCCTGATACCATGG
IRR : GGCTCTGTTTAAGAAGATTGTGGCTTTATTTTACGCCGTTGCGTGACAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGGCAATTA | AAAATAAT | AAACCGGTAG | 8 |
DNA sequence
GGCTATGTTTAAGAAGATTGTGGCTAATTTAATACACCCTGATACCATGGAAATATAGGGGAATGTATGGATAAAATTGAACATATTCTTGGACTGATTG
CAGGATTTTCGGATGAAGAGCGCGCTATTCTCAATCAAAAACTCGAACAAGCAAAGACACTCGCAATTGTGCCACGCTCTCCACAAAAACCAGTTCTCGG
GCCGGCCAAAAAGAAAATTCGTTGTCCTCAATGCGAAAGCTCCGCATTGAAAAAGCACGGCAAGTACCGAAACAGGCAGCGGTATAAATGTCTATCGTGC
TCCAAGACCTTCAATGATCTCTCAAATACTCCATTGGCGGGAGTTCACTCAACTGAAAAGATCCGACAATTCGCAACGGAAATGGCACAGGGGGGAGTTG
CCCTGAGAAAAAGTGCTGAAGAGTTTGGTATATCGCTACCAACTGCGTTCAATTGGCGACATAAAATAATACAGGGCTATTCTGTGGCAGAGGCACGAAA
ACTAAGTGGAATTGCTGAGGCCGATGAAACTTTTTTTCTCTATTCAGAAAAGGGGAATAAAGCAGTTTCTAAATTTCGAAAGCCTAGAAAGCGCGGAGGT
AAAGCAGAAAAAACAGGCATCTCTAATGAACAAGTCCCCGTACTTTTTGGATGTGATCGCCACGGGGAATTAATATTAGGAGTGGCCGGACAAGGAAGAG
TCTCACTTAAAGATATCGAGGGTGTGCTTGGTAATCGGATTGACGATGAAGCGATTCTTTGCACTGATAGTCATCCTAGTTTTCGCGCTTTTGCAAAAAC
TAACAGGATTAAATATCGGCCAGTAAATGTCAGCAAAGGCAAACGTGTTGTAAAAAAGATTTTCCATGTTCAGCACGTCAATAGTGCCCATGCTAGAATG
AAGGGGTGGATGATTCGCTTCAAGGGTGTATCAACAAAGCATTTGAACAATTATGCGCAATGGTTTGGACTAATGGAGGAGACAAAATCATTGACTGATC
GAGAGGAGAATTTTGCAGATAGAACTGTCACGCAACGGCGTAAAATAAAGCCACAATCTTCTTAAACAGAGCC
CAGGATTTTCGGATGAAGAGCGCGCTATTCTCAATCAAAAACTCGAACAAGCAAAGACACTCGCAATTGTGCCACGCTCTCCACAAAAACCAGTTCTCGG
GCCGGCCAAAAAGAAAATTCGTTGTCCTCAATGCGAAAGCTCCGCATTGAAAAAGCACGGCAAGTACCGAAACAGGCAGCGGTATAAATGTCTATCGTGC
TCCAAGACCTTCAATGATCTCTCAAATACTCCATTGGCGGGAGTTCACTCAACTGAAAAGATCCGACAATTCGCAACGGAAATGGCACAGGGGGGAGTTG
CCCTGAGAAAAAGTGCTGAAGAGTTTGGTATATCGCTACCAACTGCGTTCAATTGGCGACATAAAATAATACAGGGCTATTCTGTGGCAGAGGCACGAAA
ACTAAGTGGAATTGCTGAGGCCGATGAAACTTTTTTTCTCTATTCAGAAAAGGGGAATAAAGCAGTTTCTAAATTTCGAAAGCCTAGAAAGCGCGGAGGT
AAAGCAGAAAAAACAGGCATCTCTAATGAACAAGTCCCCGTACTTTTTGGATGTGATCGCCACGGGGAATTAATATTAGGAGTGGCCGGACAAGGAAGAG
TCTCACTTAAAGATATCGAGGGTGTGCTTGGTAATCGGATTGACGATGAAGCGATTCTTTGCACTGATAGTCATCCTAGTTTTCGCGCTTTTGCAAAAAC
TAACAGGATTAAATATCGGCCAGTAAATGTCAGCAAAGGCAAACGTGTTGTAAAAAAGATTTTCCATGTTCAGCACGTCAATAGTGCCCATGCTAGAATG
AAGGGGTGGATGATTCGCTTCAAGGGTGTATCAACAAAGCATTTGAACAATTATGCGCAATGGTTTGGACTAATGGAGGAGACAAAATCATTGACTGATC
GAGAGGAGAATTTTGCAGATAGAACTGTCACGCAACGGCGTAAAATAAAGCCACAATCTTCTTAAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 67 | 1065 | + | No |
Chemistry : DDE
ORF sequence :
MDKIEHILGLIAGFSDEERAILNQKLEQAKTLAIVPRSPQKPVLGPAKKKIRCPQCESSALKKHGKYRNRQRYKCLSCSKTFNDLSNTPLAGVHSTEKIR
QFATEMAQGGVALRKSAEEFGISLPTAFNWRHKIIQGYSVAEARKLSGIAEADETFFLYSEKGNKAVSKFRKPRKRGGKAEKTGISNEQVPVLFGCDRHG
ELILGVAGQGRVSLKDIEGVLGNRIDDEAILCTDSHPSFRAFAKTNRIKYRPVNVSKGKRVVKKIFHVQHVNSAHARMKGWMIRFKGVSTKHLNNYAQWF
GLMEETKSLTDREENFADRTVTQRRKIKPQSS
QFATEMAQGGVALRKSAEEFGISLPTAFNWRHKIIQGYSVAEARKLSGIAEADETFFLYSEKGNKAVSKFRKPRKRGGKAEKTGISNEQVPVLFGCDRHG
ELILGVAGQGRVSLKDIEGVLGNRIDDEAILCTDSHPSFRAFAKTNRIKYRPVNVSKGKRVVKKIFHVQHVNSAHARMKGWMIRFKGVSTKHLNNYAQWF
GLMEETKSLTDREENFADRTVTQRRKIKPQSS
Blast result :
Comments
ISBdb1 is 66% aa similar to ISBsp1.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.