ISBdb1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MEPZ01000017 ND Bdellovibrionales bacterium
Bdellovibrionales bacterium RIFOXYB1
DNA section
IS Length : 1073 bp

Ends


IR Length : 24/25

IRL : GGCTATGTTTAAGAAGATTGTGGCTAATTTAATACACCCTGATACCATGG
IRR : GGCTCTGTTTAAGAAGATTGTGGCTTTATTTTACGCCGTTGCGTGACAGT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGGCAATTAAAAATAATAAACCGGTAG8

DNA sequence

GGCTATGTTTAAGAAGATTGTGGCTAATTTAATACACCCTGATACCATGGAAATATAGGGGAATGTATGGATAAAATTGAACATATTCTTGGACTGATTG
CAGGATTTTCGGATGAAGAGCGCGCTATTCTCAATCAAAAACTCGAACAAGCAAAGACACTCGCAATTGTGCCACGCTCTCCACAAAAACCAGTTCTCGG
GCCGGCCAAAAAGAAAATTCGTTGTCCTCAATGCGAAAGCTCCGCATTGAAAAAGCACGGCAAGTACCGAAACAGGCAGCGGTATAAATGTCTATCGTGC
TCCAAGACCTTCAATGATCTCTCAAATACTCCATTGGCGGGAGTTCACTCAACTGAAAAGATCCGACAATTCGCAACGGAAATGGCACAGGGGGGAGTTG
CCCTGAGAAAAAGTGCTGAAGAGTTTGGTATATCGCTACCAACTGCGTTCAATTGGCGACATAAAATAATACAGGGCTATTCTGTGGCAGAGGCACGAAA
ACTAAGTGGAATTGCTGAGGCCGATGAAACTTTTTTTCTCTATTCAGAAAAGGGGAATAAAGCAGTTTCTAAATTTCGAAAGCCTAGAAAGCGCGGAGGT
AAAGCAGAAAAAACAGGCATCTCTAATGAACAAGTCCCCGTACTTTTTGGATGTGATCGCCACGGGGAATTAATATTAGGAGTGGCCGGACAAGGAAGAG
TCTCACTTAAAGATATCGAGGGTGTGCTTGGTAATCGGATTGACGATGAAGCGATTCTTTGCACTGATAGTCATCCTAGTTTTCGCGCTTTTGCAAAAAC
TAACAGGATTAAATATCGGCCAGTAAATGTCAGCAAAGGCAAACGTGTTGTAAAAAAGATTTTCCATGTTCAGCACGTCAATAGTGCCCATGCTAGAATG
AAGGGGTGGATGATTCGCTTCAAGGGTGTATCAACAAAGCATTTGAACAATTATGCGCAATGGTTTGGACTAATGGAGGAGACAAAATCATTGACTGATC
GAGAGGAGAATTTTGCAGATAGAACTGTCACGCAACGGCGTAAAATAAAGCCACAATCTTCTTAAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa671065+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDKIEHILGLIAGFSDEERAILNQKLEQAKTLAIVPRSPQKPVLGPAKKKIRCPQCESSALKKHGKYRNRQRYKCLSCSKTFNDLSNTPLAGVHSTEKIR
QFATEMAQGGVALRKSAEEFGISLPTAFNWRHKIIQGYSVAEARKLSGIAEADETFFLYSEKGNKAVSKFRKPRKRGGKAEKTGISNEQVPVLFGCDRHG
ELILGVAGQGRVSLKDIEGVLGNRIDDEAILCTDSHPSFRAFAKTNRIKYRPVNVSKGKRVVKKIFHVQHVNSAHARMKGWMIRFKGVSTKHLNNYAQWF
GLMEETKSLTDREENFADRTVTQRRKIKPQSS

 

Blast result :
Comments
ISBdb1 is 66% aa similar to ISBsp1.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.