ISJsp4
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LOCQ01000062 | ND | Janthinobacterium sp. | Janthinobacterium sp. S3-2 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 22/28
IRL : GGCTATGTCAGCGAAAACGGTGGGAACGCGCCGCAGTTGCTGAGGTCTAA
IRR : GGCTATGTCACCATCAAATGTGGGAACGTCCCCAAAGTGGCCCTGAGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCAGCGGGG | TTTTTCAT | TGCGCGGCCG | 8 |
DNA sequence
GGCTATGTCAGCGAAAACGGTGGGAACGCGCCGCAGTTGCTGAGGTCTAACTGATCAGGTATTGCCTTTCAAGGAGCCGATCATGGACACCGCCCAGTGG
CAGGCCTTCGCCAGGCAATTTCCGCAACTGTCGCATCGCCAGCGCCTTGCCAGCGGCGATCTATTGCACACCAGCGCGCCACAGGCTGCGGCCGTCATCC
TGATCGAGCAAACAGCCCTGGCACAATTGCATTGCCCTGCTTGTGGCGCGACACGATTCCACCGGCATGGCCAGGCCCACGGCCTGCAGCGCTATCGCTG
CGTGCCTTGCCGCAAAACTTTCAACGCGTTGACAGGTACGCCGCTGGCGCATCTGCACCACAAGGAACGCTGGCTAGCCTATGCCGATTGCCTGCTCAAC
TCGTTTTCGGTGCGCAAGGCCGCCGCGCAAGTGACTATTCATCGCAACACCAGCTTTCGCTGGCGCCATCGGTTTCTGGCGCTGGCCAAGACTGACCGGC
CACGCTGCCTGCACGGCATCACCGAGGCCGACGAAATGTATATTCTTGAATCGCAAAAAGGTTCAAGACACATGACGCGGCCGGCACGCCAGCGCGGTGG
CCGCGCCAGCCAGCGTGGCATTTCCAACGAGCAGGTGTGCGTGCTGGTGGCGCGCGACCGCACTGGCCAAACCGTCGATTTCGTCACCGGCATGGGCCAG
CTGACCAAGGCCACACTGCACGCCTGCCTGCCGCCGGTGATCGACCGTGACATTTTATTGGTCAGCGATGGCCATCCGGCCTATCCCGCTTTTGCCAGGG
AGATTGGCATCGAACATGCAGCGGTCAACTTGCGGGCCGGCATCCGCGTGCGCGGCACGGTGCATGTGCAGAATGTCAACGCCTATCACAGCCGGCTGCG
TGGCTGGCTGCGTGCGTTTCATGGCGTGGCCACGCGCTACCTGCCCAACTACCTGGGCTGGCGCTGGATACTCGACGCCAGGAGAATATTGTCCCCCGAA
AGCTTGCTCAGGGCCACTTTGGGGACGTTCCCACATTTGATGGTGACATAGCC
CAGGCCTTCGCCAGGCAATTTCCGCAACTGTCGCATCGCCAGCGCCTTGCCAGCGGCGATCTATTGCACACCAGCGCGCCACAGGCTGCGGCCGTCATCC
TGATCGAGCAAACAGCCCTGGCACAATTGCATTGCCCTGCTTGTGGCGCGACACGATTCCACCGGCATGGCCAGGCCCACGGCCTGCAGCGCTATCGCTG
CGTGCCTTGCCGCAAAACTTTCAACGCGTTGACAGGTACGCCGCTGGCGCATCTGCACCACAAGGAACGCTGGCTAGCCTATGCCGATTGCCTGCTCAAC
TCGTTTTCGGTGCGCAAGGCCGCCGCGCAAGTGACTATTCATCGCAACACCAGCTTTCGCTGGCGCCATCGGTTTCTGGCGCTGGCCAAGACTGACCGGC
CACGCTGCCTGCACGGCATCACCGAGGCCGACGAAATGTATATTCTTGAATCGCAAAAAGGTTCAAGACACATGACGCGGCCGGCACGCCAGCGCGGTGG
CCGCGCCAGCCAGCGTGGCATTTCCAACGAGCAGGTGTGCGTGCTGGTGGCGCGCGACCGCACTGGCCAAACCGTCGATTTCGTCACCGGCATGGGCCAG
CTGACCAAGGCCACACTGCACGCCTGCCTGCCGCCGGTGATCGACCGTGACATTTTATTGGTCAGCGATGGCCATCCGGCCTATCCCGCTTTTGCCAGGG
AGATTGGCATCGAACATGCAGCGGTCAACTTGCGGGCCGGCATCCGCGTGCGCGGCACGGTGCATGTGCAGAATGTCAACGCCTATCACAGCCGGCTGCG
TGGCTGGCTGCGTGCGTTTCATGGCGTGGCCACGCGCTACCTGCCCAACTACCTGGGCTGGCGCTGGATACTCGACGCCAGGAGAATATTGTCCCCCGAA
AGCTTGCTCAGGGCCACTTTGGGGACGTTCCCACATTTGATGGTGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 83 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MDTAQWQAFARQFPQLSHRQRLASGDLLHTSAPQAAAVILIEQTALAQLHCPACGATRFHRHGQAHGLQRYRCVPCRKTFNALTGTPLAHLHHKERWLAY
ADCLLNSFSVRKAAAQVTIHRNTSFRWRHRFLALAKTDRPRCLHGITEADEMYILESQKGSRHMTRPARQRGGRASQRGISNEQVCVLVARDRTGQTVDF
VTGMGQLTKATLHACLPPVIDRDILLVSDGHPAYPAFAREIGIEHAAVNLRAGIRVRGTVHVQNVNAYHSRLRGWLRAFHGVATRYLPNYLGWRWILDAR
RILSPESLLRATLGTFPHLMVT
ADCLLNSFSVRKAAAQVTIHRNTSFRWRHRFLALAKTDRPRCLHGITEADEMYILESQKGSRHMTRPARQRGGRASQRGISNEQVCVLVARDRTGQTVDF
VTGMGQLTKATLHACLPPVIDRDILLVSDGHPAYPAFAREIGIEHAAVNLRAGIRVRGTVHVQNVNAYHSRLRGWLRAFHGVATRYLPNYLGWRWILDAR
RILSPESLLRATLGTFPHLMVT
Blast result :
Comments
ISJsp4 is 66% aa similar to ISMetu1.
References
1] ISfinder annotation (2016)
2] Gong,X., Skrivergaard,S., Korsgaard,B.S., Schreiber,L., Marshall,I.P., Finster,K. and Schramm,A. (2016) Direct GenBank submission.
2] Gong,X., Skrivergaard,S., Korsgaard,B.S., Schreiber,L., Marshall,I.P., Finster,K. and Schramm,A. (2016) Direct GenBank submission.