ISJsp4

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LOCQ01000062 ND Janthinobacterium sp.
Janthinobacterium sp. S3-2
DNA section
IS Length : 1053 bp

Ends


IR Length : 22/28

IRL : GGCTATGTCAGCGAAAACGGTGGGAACGCGCCGCAGTTGCTGAGGTCTAA
IRR : GGCTATGTCACCATCAAATGTGGGAACGTCCCCAAAGTGGCCCTGAGCAA

Insertion site


Left flankDirect repeatRight flankDR Length
GCCAGCGGGGTTTTTCATTGCGCGGCCG8

DNA sequence

GGCTATGTCAGCGAAAACGGTGGGAACGCGCCGCAGTTGCTGAGGTCTAACTGATCAGGTATTGCCTTTCAAGGAGCCGATCATGGACACCGCCCAGTGG
CAGGCCTTCGCCAGGCAATTTCCGCAACTGTCGCATCGCCAGCGCCTTGCCAGCGGCGATCTATTGCACACCAGCGCGCCACAGGCTGCGGCCGTCATCC
TGATCGAGCAAACAGCCCTGGCACAATTGCATTGCCCTGCTTGTGGCGCGACACGATTCCACCGGCATGGCCAGGCCCACGGCCTGCAGCGCTATCGCTG
CGTGCCTTGCCGCAAAACTTTCAACGCGTTGACAGGTACGCCGCTGGCGCATCTGCACCACAAGGAACGCTGGCTAGCCTATGCCGATTGCCTGCTCAAC
TCGTTTTCGGTGCGCAAGGCCGCCGCGCAAGTGACTATTCATCGCAACACCAGCTTTCGCTGGCGCCATCGGTTTCTGGCGCTGGCCAAGACTGACCGGC
CACGCTGCCTGCACGGCATCACCGAGGCCGACGAAATGTATATTCTTGAATCGCAAAAAGGTTCAAGACACATGACGCGGCCGGCACGCCAGCGCGGTGG
CCGCGCCAGCCAGCGTGGCATTTCCAACGAGCAGGTGTGCGTGCTGGTGGCGCGCGACCGCACTGGCCAAACCGTCGATTTCGTCACCGGCATGGGCCAG
CTGACCAAGGCCACACTGCACGCCTGCCTGCCGCCGGTGATCGACCGTGACATTTTATTGGTCAGCGATGGCCATCCGGCCTATCCCGCTTTTGCCAGGG
AGATTGGCATCGAACATGCAGCGGTCAACTTGCGGGCCGGCATCCGCGTGCGCGGCACGGTGCATGTGCAGAATGTCAACGCCTATCACAGCCGGCTGCG
TGGCTGGCTGCGTGCGTTTCATGGCGTGGCCACGCGCTACCTGCCCAACTACCTGGGCTGGCGCTGGATACTCGACGCCAGGAGAATATTGTCCCCCGAA
AGCTTGCTCAGGGCCACTTTGGGGACGTTCCCACATTTGATGGTGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa831051+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDTAQWQAFARQFPQLSHRQRLASGDLLHTSAPQAAAVILIEQTALAQLHCPACGATRFHRHGQAHGLQRYRCVPCRKTFNALTGTPLAHLHHKERWLAY
ADCLLNSFSVRKAAAQVTIHRNTSFRWRHRFLALAKTDRPRCLHGITEADEMYILESQKGSRHMTRPARQRGGRASQRGISNEQVCVLVARDRTGQTVDF
VTGMGQLTKATLHACLPPVIDRDILLVSDGHPAYPAFAREIGIEHAAVNLRAGIRVRGTVHVQNVNAYHSRLRGWLRAFHGVATRYLPNYLGWRWILDAR
RILSPESLLRATLGTFPHLMVT

 

Blast result :
Comments
ISJsp4 is 66% aa similar to ISMetu1.
References
1] ISfinder annotation (2016)
2] Gong,X., Skrivergaard,S., Korsgaard,B.S., Schreiber,L., Marshall,I.P., Finster,K. and Schramm,A. (2016) Direct GenBank submission.