ISPosp8

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CCJP01000005 ND Polaromonas sp.
Polaromonas sp. CG9_12
DNA section
IS Length : 1055 bp

Ends


IR Length : 29

IRL : GGCTATGTCACCGTTAAATGTGGAAATTTTGTTCCAGAGGAGTAGAGTCA
IRR : GGCTATGTCACCGTTAAATGTGGAAATTTCCCCAATGTCATTGCCAGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TACCGACGACTTCTTTGCCCGAAGGCATCGGCGGCGA8

DNA sequence

GGCTATGTCACCGTTAAATGTGGAAATTTTGTTCCAGAGGAGTAGAGTCACAGCGAACCCTGCCAGGAGGTAGCCATCATGAATGCCAAGACTTTCAATG
GATTGCTGAAACAAGTAGCCCGGCTCACGTTGCACCAGCGCGAGTTACTCCGAAAGCGGCTTGATACGCTCGATGGCGGCGAGCAAAAAGTGCTGGCCGT
CATCGAGTCGCCCAGATCGGAGCACCCGCGCAGCTGCCCGCACTGCCATGGCACCGAGCTTGACCGGCATGGTCAGGTCAGCGGGCTGCAGCGCTATCGC
TGCCAGACGTGCCATCGCACCTTCAACGCATTGACCGGCACGACGCTGGCGCGGCTTCGCAAGAAAGATAAATGGCTTGGTTTTAGCGCCGCGCTGGTGG
CGTCCCAGCCGCTTCGCCCGGCAGCCGCTGCCTTGCAGGTTCACCGCAACACCACGCTGCGCTGGCGCCACCGCTTCTTGAACAGCGTCAAGGCGGACCG
CCCCACCACGCTGCAAGGCATCACGGAGGCCGACGAGACGTATTTTCTGGAGTCCCGCAAGGGTTGCCGCAAGCTGGAGCGGCCCGCTCGCCGGCGCGGC
GGCAAAGCGGGCAAACCGGGTTTATCCAATGAGCAGGTCTGCGTTTTGGTGGCACGCGAGCGCACGGGGCAGACGCTGGACTGGGTGATGGGGCGCGGGC
AGATGAGCAAAGCCGAACTGGCCAGTGCATTGCAGTCCGTGCTGGCCAAGGACGCGCTGCTGGTGAGCGATGGCAATCCGACCTATCGCGGCTTTGCGCA
AGACGCGCACCTCGCGCATGAGGCGGTCAACCTCAGCGCGGGCGTACGCGTCAACGGCGCCATCCATGTCCAGAACGTCAACGCCTATCACGGCCGCCTC
AAGCACTGGATACAGCGCTTTCATGGCGTTGCCACGGGTTATCTGGACAACTACCTGGGCTGGTTTCGCGCCCTAGACAACCACCATGCCGCCTCTGCGG
AGGCTGTCCTGGCAATGACATTGGGGAAATTTCCACATTTAACGGTGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
975 bp324 aa791053+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNAKTFNGLLKQVARLTLHQRELLRKRLDTLDGGEQKVLAVIESPRSEHPRSCPHCHGTELDRHGQVSGLQRYRCQTCHRTFNALTGTTLARLRKKDKWL
GFSAALVASQPLRPAAAALQVHRNTTLRWRHRFLNSVKADRPTTLQGITEADETYFLESRKGCRKLERPARRRGGKAGKPGLSNEQVCVLVARERTGQTL
DWVMGRGQMSKAELASALQSVLAKDALLVSDGNPTYRGFAQDAHLAHEAVNLSAGVRVNGAIHVQNVNAYHGRLKHWIQRFHGVATGYLDNYLGWFRALD
NHHAASAEAVLAMTLGKFPHLTVT

 

Blast result :
Comments
ISPosp8 is 85% aa similar to ISPna2.
References
1] ISfinder annotation (2016)
2] Smith,H.J., Foreman,C.M. and Ramaraj,T. (2014) Genome Announc 2 (6).