ISPosp8
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CCJP01000005 | ND | Polaromonas sp. | Polaromonas sp. CG9_12 |
DNA section
IS Length : 1055 bp
Ends
IR Length : 29
IRL : GGCTATGTCACCGTTAAATGTGGAAATTTTGTTCCAGAGGAGTAGAGTCA
IRR : GGCTATGTCACCGTTAAATGTGGAAATTTCCCCAATGTCATTGCCAGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCGACGACTTCT | TTGCCCGA | AGGCATCGGCGGCGA | 8 |
DNA sequence
GGCTATGTCACCGTTAAATGTGGAAATTTTGTTCCAGAGGAGTAGAGTCACAGCGAACCCTGCCAGGAGGTAGCCATCATGAATGCCAAGACTTTCAATG
GATTGCTGAAACAAGTAGCCCGGCTCACGTTGCACCAGCGCGAGTTACTCCGAAAGCGGCTTGATACGCTCGATGGCGGCGAGCAAAAAGTGCTGGCCGT
CATCGAGTCGCCCAGATCGGAGCACCCGCGCAGCTGCCCGCACTGCCATGGCACCGAGCTTGACCGGCATGGTCAGGTCAGCGGGCTGCAGCGCTATCGC
TGCCAGACGTGCCATCGCACCTTCAACGCATTGACCGGCACGACGCTGGCGCGGCTTCGCAAGAAAGATAAATGGCTTGGTTTTAGCGCCGCGCTGGTGG
CGTCCCAGCCGCTTCGCCCGGCAGCCGCTGCCTTGCAGGTTCACCGCAACACCACGCTGCGCTGGCGCCACCGCTTCTTGAACAGCGTCAAGGCGGACCG
CCCCACCACGCTGCAAGGCATCACGGAGGCCGACGAGACGTATTTTCTGGAGTCCCGCAAGGGTTGCCGCAAGCTGGAGCGGCCCGCTCGCCGGCGCGGC
GGCAAAGCGGGCAAACCGGGTTTATCCAATGAGCAGGTCTGCGTTTTGGTGGCACGCGAGCGCACGGGGCAGACGCTGGACTGGGTGATGGGGCGCGGGC
AGATGAGCAAAGCCGAACTGGCCAGTGCATTGCAGTCCGTGCTGGCCAAGGACGCGCTGCTGGTGAGCGATGGCAATCCGACCTATCGCGGCTTTGCGCA
AGACGCGCACCTCGCGCATGAGGCGGTCAACCTCAGCGCGGGCGTACGCGTCAACGGCGCCATCCATGTCCAGAACGTCAACGCCTATCACGGCCGCCTC
AAGCACTGGATACAGCGCTTTCATGGCGTTGCCACGGGTTATCTGGACAACTACCTGGGCTGGTTTCGCGCCCTAGACAACCACCATGCCGCCTCTGCGG
AGGCTGTCCTGGCAATGACATTGGGGAAATTTCCACATTTAACGGTGACATAGCC
GATTGCTGAAACAAGTAGCCCGGCTCACGTTGCACCAGCGCGAGTTACTCCGAAAGCGGCTTGATACGCTCGATGGCGGCGAGCAAAAAGTGCTGGCCGT
CATCGAGTCGCCCAGATCGGAGCACCCGCGCAGCTGCCCGCACTGCCATGGCACCGAGCTTGACCGGCATGGTCAGGTCAGCGGGCTGCAGCGCTATCGC
TGCCAGACGTGCCATCGCACCTTCAACGCATTGACCGGCACGACGCTGGCGCGGCTTCGCAAGAAAGATAAATGGCTTGGTTTTAGCGCCGCGCTGGTGG
CGTCCCAGCCGCTTCGCCCGGCAGCCGCTGCCTTGCAGGTTCACCGCAACACCACGCTGCGCTGGCGCCACCGCTTCTTGAACAGCGTCAAGGCGGACCG
CCCCACCACGCTGCAAGGCATCACGGAGGCCGACGAGACGTATTTTCTGGAGTCCCGCAAGGGTTGCCGCAAGCTGGAGCGGCCCGCTCGCCGGCGCGGC
GGCAAAGCGGGCAAACCGGGTTTATCCAATGAGCAGGTCTGCGTTTTGGTGGCACGCGAGCGCACGGGGCAGACGCTGGACTGGGTGATGGGGCGCGGGC
AGATGAGCAAAGCCGAACTGGCCAGTGCATTGCAGTCCGTGCTGGCCAAGGACGCGCTGCTGGTGAGCGATGGCAATCCGACCTATCGCGGCTTTGCGCA
AGACGCGCACCTCGCGCATGAGGCGGTCAACCTCAGCGCGGGCGTACGCGTCAACGGCGCCATCCATGTCCAGAACGTCAACGCCTATCACGGCCGCCTC
AAGCACTGGATACAGCGCTTTCATGGCGTTGCCACGGGTTATCTGGACAACTACCTGGGCTGGTTTCGCGCCCTAGACAACCACCATGCCGCCTCTGCGG
AGGCTGTCCTGGCAATGACATTGGGGAAATTTCCACATTTAACGGTGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
975 bp | 324 aa | 79 | 1053 | + | No |
Chemistry : DDE
ORF sequence :
MNAKTFNGLLKQVARLTLHQRELLRKRLDTLDGGEQKVLAVIESPRSEHPRSCPHCHGTELDRHGQVSGLQRYRCQTCHRTFNALTGTTLARLRKKDKWL
GFSAALVASQPLRPAAAALQVHRNTTLRWRHRFLNSVKADRPTTLQGITEADETYFLESRKGCRKLERPARRRGGKAGKPGLSNEQVCVLVARERTGQTL
DWVMGRGQMSKAELASALQSVLAKDALLVSDGNPTYRGFAQDAHLAHEAVNLSAGVRVNGAIHVQNVNAYHGRLKHWIQRFHGVATGYLDNYLGWFRALD
NHHAASAEAVLAMTLGKFPHLTVT
GFSAALVASQPLRPAAAALQVHRNTTLRWRHRFLNSVKADRPTTLQGITEADETYFLESRKGCRKLERPARRRGGKAGKPGLSNEQVCVLVARERTGQTL
DWVMGRGQMSKAELASALQSVLAKDALLVSDGNPTYRGFAQDAHLAHEAVNLSAGVRVNGAIHVQNVNAYHGRLKHWIQRFHGVATGYLDNYLGWFRALD
NHHAASAEAVLAMTLGKFPHLTVT
Blast result :
Comments
ISPosp8 is 85% aa similar to ISPna2.
References
1] ISfinder annotation (2016)
2] Smith,H.J., Foreman,C.M. and Ramaraj,T. (2014) Genome Announc 2 (6).
2] Smith,H.J., Foreman,C.M. and Ramaraj,T. (2014) Genome Announc 2 (6).