ISHda1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FOBC01000021 | ND | Halomonas daqiaonensis | Halomonas daqiaonensis CGMCC 1.9150 |
DNA section
IS Length : 1074 bp
Ends
IR Length : 27/29
IRL : GGCTATGTTGGTATCTGTTGTTGGCGTGCTTTAAAAATACTGTATAAACT
IRR : GGCTATGTTGGTATCTGTTGTTGGTCTGCGCCTATCGCCTTGCGAAACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNN | ATATTTATACAGCTTAAAGGTGC | 0 |
DNA sequence
GGCTATGTTGGTATCTGTTGTTGGCGTGCTTTAAAAATACTGTATAAACTACTGTATATCCAGTTTTCCTCTGGGGCACGCCATGAATCAATCAGACCTC
AAAGCCCTCGAACAGACACTGACTCGCCTCCCTGACCATCTCAAGAAATACCTGGCAGATCAGATTCTTGGGCAAATAAGCTCCCAAGCGAACACCTTGC
TCGACACCGCGAGACCTCACCTTCCCTGCCCACACTGTGGCGCTGAATACCCTGCAAAGTGGGGGCGCAGCGGTGGCCTGCAGCGGTATCGCTGCCGGAA
TCCCGATTGTCGCAAGACCTTCAATGCCCTCACAGGTACGCCCCTGGCCAAACTGCAGCACCGCGACAAGTGGTTTGATTACCTGCGCTGCATGCGAGAC
AGTCTGACGTTACGTGTCTCGGCGGCCCGAGTGGGCATCGATTTGAAGACGGCCTTCCGCTGGCGACATCGCTTCCTGAAAACGAGCGCTCAAGACAACG
CCAACCCACTATCCGGCATCATCGAGGTAGACGAAACCTTCTTCCTGGAGTCCTGCAAAGGAAAGCGTAATCTCACGCACCGCAAACCTCGAAGGCGCGG
CGGGCAAGGCGATATGAAGAAAAAAGGGCAAAAGATTCAGGTTCTTATTGCGCGAGACCGTAACGGAAAGATCAGTGACTTGGTCGATCCGGCGCTCAAG
AAATCCACTGTTCATGAATTCTTGGCACCGATCATCGATCGTGACTCGATTTTATGTTCGGACGGGCACAGCTGGTATAAAACCTTCTCTGCCGACCATG
GCATTGCTCATCATCGACTGATCACACTCGACAATCAGCGAGTGCTTGGCAAGGAATACCACATTCAGAACGTAAACAGCTATATGAGCCGTTTGAAGGG
CTGGATGACGCGCTTTCATGGGGTGGGGACCGAGTACTTACCCAATTACCTGGCATGGCGACGGTTGTTTGAAACCGCGAAGCCAGCAGAGGAAGCGTGG
TTTCGCAAGGCGATAGGCGCAGACCAACAACAGATACCAACATAGCC
AAAGCCCTCGAACAGACACTGACTCGCCTCCCTGACCATCTCAAGAAATACCTGGCAGATCAGATTCTTGGGCAAATAAGCTCCCAAGCGAACACCTTGC
TCGACACCGCGAGACCTCACCTTCCCTGCCCACACTGTGGCGCTGAATACCCTGCAAAGTGGGGGCGCAGCGGTGGCCTGCAGCGGTATCGCTGCCGGAA
TCCCGATTGTCGCAAGACCTTCAATGCCCTCACAGGTACGCCCCTGGCCAAACTGCAGCACCGCGACAAGTGGTTTGATTACCTGCGCTGCATGCGAGAC
AGTCTGACGTTACGTGTCTCGGCGGCCCGAGTGGGCATCGATTTGAAGACGGCCTTCCGCTGGCGACATCGCTTCCTGAAAACGAGCGCTCAAGACAACG
CCAACCCACTATCCGGCATCATCGAGGTAGACGAAACCTTCTTCCTGGAGTCCTGCAAAGGAAAGCGTAATCTCACGCACCGCAAACCTCGAAGGCGCGG
CGGGCAAGGCGATATGAAGAAAAAAGGGCAAAAGATTCAGGTTCTTATTGCGCGAGACCGTAACGGAAAGATCAGTGACTTGGTCGATCCGGCGCTCAAG
AAATCCACTGTTCATGAATTCTTGGCACCGATCATCGATCGTGACTCGATTTTATGTTCGGACGGGCACAGCTGGTATAAAACCTTCTCTGCCGACCATG
GCATTGCTCATCATCGACTGATCACACTCGACAATCAGCGAGTGCTTGGCAAGGAATACCACATTCAGAACGTAAACAGCTATATGAGCCGTTTGAAGGG
CTGGATGACGCGCTTTCATGGGGTGGGGACCGAGTACTTACCCAATTACCTGGCATGGCGACGGTTGTTTGAAACCGCGAAGCCAGCAGAGGAAGCGTGG
TTTCGCAAGGCGATAGGCGCAGACCAACAACAGATACCAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 83 | 1045 | + | No |
Chemistry : DDE
ORF sequence :
MNQSDLKALEQTLTRLPDHLKKYLADQILGQISSQANTLLDTARPHLPCPHCGAEYPAKWGRSGGLQRYRCRNPDCRKTFNALTGTPLAKLQHRDKWFDY
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLKTSAQDNANPLSGIIEVDETFFLESCKGKRNLTHRKPRRRGGQGDMKKKGQKIQVLIARDRNGKISDL
VDPALKKSTVHEFLAPIIDRDSILCSDGHSWYKTFSADHGIAHHRLITLDNQRVLGKEYHIQNVNSYMSRLKGWMTRFHGVGTEYLPNYLAWRRLFETAK
PAEEAWFRKAIGADQQQIPT
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLKTSAQDNANPLSGIIEVDETFFLESCKGKRNLTHRKPRRRGGQGDMKKKGQKIQVLIARDRNGKISDL
VDPALKKSTVHEFLAPIIDRDSILCSDGHSWYKTFSADHGIAHHRLITLDNQRVLGKEYHIQNVNSYMSRLKGWMTRFHGVGTEYLPNYLAWRRLFETAK
PAEEAWFRKAIGADQQQIPT
Blast result :
Comments
ISHda1 is 85% aa similar to ISMrsp7.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.