ISHda1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOBC01000021 ND Halomonas daqiaonensis
Halomonas daqiaonensis CGMCC 1.9150
DNA section
IS Length : 1074 bp

Ends


IR Length : 27/29

IRL : GGCTATGTTGGTATCTGTTGTTGGCGTGCTTTAAAAATACTGTATAAACT
IRR : GGCTATGTTGGTATCTGTTGTTGGTCTGCGCCTATCGCCTTGCGAAACCA

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNATATTTATACAGCTTAAAGGTGC0

DNA sequence

GGCTATGTTGGTATCTGTTGTTGGCGTGCTTTAAAAATACTGTATAAACTACTGTATATCCAGTTTTCCTCTGGGGCACGCCATGAATCAATCAGACCTC
AAAGCCCTCGAACAGACACTGACTCGCCTCCCTGACCATCTCAAGAAATACCTGGCAGATCAGATTCTTGGGCAAATAAGCTCCCAAGCGAACACCTTGC
TCGACACCGCGAGACCTCACCTTCCCTGCCCACACTGTGGCGCTGAATACCCTGCAAAGTGGGGGCGCAGCGGTGGCCTGCAGCGGTATCGCTGCCGGAA
TCCCGATTGTCGCAAGACCTTCAATGCCCTCACAGGTACGCCCCTGGCCAAACTGCAGCACCGCGACAAGTGGTTTGATTACCTGCGCTGCATGCGAGAC
AGTCTGACGTTACGTGTCTCGGCGGCCCGAGTGGGCATCGATTTGAAGACGGCCTTCCGCTGGCGACATCGCTTCCTGAAAACGAGCGCTCAAGACAACG
CCAACCCACTATCCGGCATCATCGAGGTAGACGAAACCTTCTTCCTGGAGTCCTGCAAAGGAAAGCGTAATCTCACGCACCGCAAACCTCGAAGGCGCGG
CGGGCAAGGCGATATGAAGAAAAAAGGGCAAAAGATTCAGGTTCTTATTGCGCGAGACCGTAACGGAAAGATCAGTGACTTGGTCGATCCGGCGCTCAAG
AAATCCACTGTTCATGAATTCTTGGCACCGATCATCGATCGTGACTCGATTTTATGTTCGGACGGGCACAGCTGGTATAAAACCTTCTCTGCCGACCATG
GCATTGCTCATCATCGACTGATCACACTCGACAATCAGCGAGTGCTTGGCAAGGAATACCACATTCAGAACGTAAACAGCTATATGAGCCGTTTGAAGGG
CTGGATGACGCGCTTTCATGGGGTGGGGACCGAGTACTTACCCAATTACCTGGCATGGCGACGGTTGTTTGAAACCGCGAAGCCAGCAGAGGAAGCGTGG
TTTCGCAAGGCGATAGGCGCAGACCAACAACAGATACCAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa831045+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNQSDLKALEQTLTRLPDHLKKYLADQILGQISSQANTLLDTARPHLPCPHCGAEYPAKWGRSGGLQRYRCRNPDCRKTFNALTGTPLAKLQHRDKWFDY
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLKTSAQDNANPLSGIIEVDETFFLESCKGKRNLTHRKPRRRGGQGDMKKKGQKIQVLIARDRNGKISDL
VDPALKKSTVHEFLAPIIDRDSILCSDGHSWYKTFSADHGIAHHRLITLDNQRVLGKEYHIQNVNSYMSRLKGWMTRFHGVGTEYLPNYLAWRRLFETAK
PAEEAWFRKAIGADQQQIPT

 

Blast result :
Comments
ISHda1 is 85% aa similar to ISMrsp7.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.