ISPxa1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CCYE01000005 | ND | Pseudomonas xanthomarina | Pseudomonas xanthomarina S11 |
DNA section
IS Length : 1026 bp
Ends
IR Length : 21/24
IRL : GGCTCTGTCTGAGTTGACTGTTGCGGTGGTCTAAACTGAATCGTGATATC
IRR : GGCTATGTCTGAGTTAGCTGTTGCACGTTTGTATGCCCCAGCGATTCACT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGGGCATTTGT | TTAT | TTTTCACACTTTCC | 4 |
DNA sequence
GGCTCTGTCTGAGTTGACTGTTGCGGTGGTCTAAACTGAATCGTGATATCTCCGAGTGCGAGGGATTGATCATGAAAGCGATTCAGTTTTCTCGGTGGGT
AGCCAACTGCCCACCCTCACACCAGAGCAGCGCCGTCAGTTGAGCGCCAGCCTTTCGCGCACTGATGTGTTCCCGCAGGACGCAATCAAAGCTCCCAGCC
ACTGCCCGCATTGCCAGTCCAAAGAGCTGCGTCCGTGGGGCTCCAGTGGTGACCTCCCTCGGTATCGCTGCAAGGCTTGCGGCAAAACCAGTAACGCCCT
GACGGGCACGCCTATGGCGCGATTGAGAAAGCGCCACCTTTGGCAAGATTATGCAGAAGCGTTGACCCAGAGCCTGAGCGTACGTAAGGCCGCAATCCAT
TGTAGCGTCAGCAAGAACACGGCTTTCCTGTGGCGACACAGGTTTCTTTCTCGGATTGCCGATCACCAGGCCCAGCATGCTTCGGGCATTGTCGAGGCGG
ATGAGACATTCTTCCTGGAGTCCTTCAAGGGCCAGCGAGACCTACCCCGCCCACCCCGTAAGCGAGGTGGCAGTGCCAAAAAACGCGGGTTGTCTGCCGA
GCAAATCCCGGTATTGGTGGTGAGAGATCGCAGTGGCCAGCAGGCCGACTTCAAGCTGGAGAAGCTTGATGCGCGCCACGTTGGGGAGCGGCTGCGCCCC
CTGATAGACGCGGACGCGATTCTTTGTACCGACAGCGCAGGTGTCTATGCCCACTTTGCCAAGGCAGAAGGCATTACTCATAGGCCGATCAATCCAAGTC
AGAAACGACGGATTGATGGCGCTTTCCACATCCAGAACGTGAACGCCTACGATAGTCGGCTCAAAAACTGGATGATTCCTTTTCATGGTGTGGCCACCAA
GTACCTGACGAACTATCTGGGCTGGCGTCGCCTGCTTGAGCGCTACAAAACACACATCAACCCCTTGATTTGTCTGAGTGAATCGCTGGGGCATACAAAC
GTGCAACAGCTAACTCAGACATAGCC
AGCCAACTGCCCACCCTCACACCAGAGCAGCGCCGTCAGTTGAGCGCCAGCCTTTCGCGCACTGATGTGTTCCCGCAGGACGCAATCAAAGCTCCCAGCC
ACTGCCCGCATTGCCAGTCCAAAGAGCTGCGTCCGTGGGGCTCCAGTGGTGACCTCCCTCGGTATCGCTGCAAGGCTTGCGGCAAAACCAGTAACGCCCT
GACGGGCACGCCTATGGCGCGATTGAGAAAGCGCCACCTTTGGCAAGATTATGCAGAAGCGTTGACCCAGAGCCTGAGCGTACGTAAGGCCGCAATCCAT
TGTAGCGTCAGCAAGAACACGGCTTTCCTGTGGCGACACAGGTTTCTTTCTCGGATTGCCGATCACCAGGCCCAGCATGCTTCGGGCATTGTCGAGGCGG
ATGAGACATTCTTCCTGGAGTCCTTCAAGGGCCAGCGAGACCTACCCCGCCCACCCCGTAAGCGAGGTGGCAGTGCCAAAAAACGCGGGTTGTCTGCCGA
GCAAATCCCGGTATTGGTGGTGAGAGATCGCAGTGGCCAGCAGGCCGACTTCAAGCTGGAGAAGCTTGATGCGCGCCACGTTGGGGAGCGGCTGCGCCCC
CTGATAGACGCGGACGCGATTCTTTGTACCGACAGCGCAGGTGTCTATGCCCACTTTGCCAAGGCAGAAGGCATTACTCATAGGCCGATCAATCCAAGTC
AGAAACGACGGATTGATGGCGCTTTCCACATCCAGAACGTGAACGCCTACGATAGTCGGCTCAAAAACTGGATGATTCCTTTTCATGGTGTGGCCACCAA
GTACCTGACGAACTATCTGGGCTGGCGTCGCCTGCTTGAGCGCTACAAAACACACATCAACCCCTTGATTTGTCTGAGTGAATCGCTGGGGCATACAAAC
GTGCAACAGCTAACTCAGACATAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 930 bp | 309 aa | 95 | 1024 | + | No |
Chemistry : DDE
ORF sequence :
MGSQLPTLTPEQRRQLSASLSRTDVFPQDAIKAPSHCPHCQSKELRPWGSSGDLPRYRCKACGKTSNALTGTPMARLRKRHLWQDYAEALTQSLSVRKAA
IHCSVSKNTAFLWRHRFLSRIADHQAQHASGIVEADETFFLESFKGQRDLPRPPRKRGGSAKKRGLSAEQIPVLVVRDRSGQQADFKLEKLDARHVGERL
RPLIDADAILCTDSAGVYAHFAKAEGITHRPINPSQKRRIDGAFHIQNVNAYDSRLKNWMIPFHGVATKYLTNYLGWRRLLERYKTHINPLICLSESLGH
TNVQQLTQT
IHCSVSKNTAFLWRHRFLSRIADHQAQHASGIVEADETFFLESFKGQRDLPRPPRKRGGSAKKRGLSAEQIPVLVVRDRSGQQADFKLEKLDARHVGERL
RPLIDADAILCTDSAGVYAHFAKAEGITHRPINPSQKRRIDGAFHIQNVNAYDSRLKNWMIPFHGVATKYLTNYLGWRRLLERYKTHINPLICLSESLGH
TNVQQLTQT
Blast result :
Comments
ISPxa1 is 93% aa similar to ISAchd1.
References