ISPsta1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AWSQ01000008 ND Pseudomonas taeanensis
Pseudomonas taeanensis MS-3
DNA section
IS Length : 1027 bp

Ends


IR Length : 25

IRL : GGCTATGTCTGAGTTAACTGTTGCAGTGGCCTAAACTGAATCGTGACATC
IRR : GGCTATGTCTGAGTTAACTGTTGCACGTCCGTATACCCCAGCGACTCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
TTAAGAGGCCATTAACGAATCGCCAGGCG8

DNA sequence

GGCTATGTCTGAGTTAACTGTTGCAGTGGCCTAAACTGAATCGTGACATCTCCGAGTGCGAGGGATTGATCATGAAGGCGATTCAGTTTTCACGGTGGAT
AGCACAGCTCTCCACCCTCAACCCAAAGCAGCGCGATCAGTTGAGAACTAGCCTTTCGCGGGCTAGCGGGCTCCCGCCGGACGCAATCAAAGCCCCCAGT
CACTGCCCACATTGTCAGTCCAGAGAGCTGCGCCCATGGGGCGCCAGTAGTGACTTGCCTCGGTACCGCTGCAAGGCTTGCGGCAAAACCAGTAATGCCC
TGACGGGCACTCCTATGGCGCGATTGCGAAAGCGCCATCTTTGGCAAGACTATGCAGAAGCACTGATCCAGAGCCTGAGCGTACGCAAGGCCGCAATCCA
TTGCGGCGTCAGCAAGAACACGGCTTTCTTGTGGCGGCACAGGTTTCTTTCTCGGATTGCCGGTCACCAAGCCCAGCATGCATCTGGCATTGTCGAAGCG
GATGAAACCTTCTTCCTGGAATCCTTCAAGGGCCAGCGAAAACTGCCCCGGCCACCTCGCAAACGCGGAGGAAGTGCCAAACGACGCGGGTTGTCTGCCG
AACAGATCCCGGTGTTGGTGGTGAGAGATCGCAGTGGTCAACAGGCTGACTTCAAGCTTGAAAAACTCGATGCGGTTCACGTCGGGGAACAGCTACGCCC
CCTGGTTGATGTGGACGCGATTCTTTGTACCGACAGTGCAGGTGTCTATGCCCACTTTGCCAAAGCAGCAGGCATTACTCATCGACCGATAAACCCGAGC
CAGAAGCGCCGGGTTGATGGGGCTTTCCACATCCAGAACGTGAACGCCTACGATAGCCGGCTCAAGAGCTGGATGATTCCTTTTCATGGTGTGGCCACCA
AGTACCTAACGAACTATCTGGGCTGGCGGCGCCTGCTTGAGCGCTACAACGCGCAGATCAACCCATTGATTTGCTTGGGGGAGTCGCTGGGGTATACGGA
CGTGCAACAGTTAACTCAGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa721025+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAIQFSRWIAQLSTLNPKQRDQLRTSLSRASGLPPDAIKAPSHCPHCQSRELRPWGASSDLPRYRCKACGKTSNALTGTPMARLRKRHLWQDYAEALIQ
SLSVRKAAIHCGVSKNTAFLWRHRFLSRIAGHQAQHASGIVEADETFFLESFKGQRKLPRPPRKRGGSAKRRGLSAEQIPVLVVRDRSGQQADFKLEKLD
AVHVGEQLRPLVDVDAILCTDSAGVYAHFAKAAGITHRPINPSQKRRVDGAFHIQNVNAYDSRLKSWMIPFHGVATKYLTNYLGWRRLLERYNAQINPLI
CLGESLGYTDVQQLTQT

 

Blast result :
Comments
ISPsta1 is 93% aa similar to ISAchd1.
References
1] ISfinder annotation (2016)
2] Lee,S.Y., Kim,S.H., Lee,D.G., Shin,S., Yun,S.H., Choi,C.W., Chung,Y.H., Choi,J.S., Kahng,H.Y. and Kim,S.I. (2014) Genome Announc 2 (1).