ISPsta1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AWSQ01000008 | ND | Pseudomonas taeanensis | Pseudomonas taeanensis MS-3 |
DNA section
IS Length : 1027 bp
Ends
IR Length : 25
IRL : GGCTATGTCTGAGTTAACTGTTGCAGTGGCCTAAACTGAATCGTGACATC
IRR : GGCTATGTCTGAGTTAACTGTTGCACGTCCGTATACCCCAGCGACTCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAGAGGCCA | TTAACGAA | TCGCCAGGCG | 8 |
DNA sequence
GGCTATGTCTGAGTTAACTGTTGCAGTGGCCTAAACTGAATCGTGACATCTCCGAGTGCGAGGGATTGATCATGAAGGCGATTCAGTTTTCACGGTGGAT
AGCACAGCTCTCCACCCTCAACCCAAAGCAGCGCGATCAGTTGAGAACTAGCCTTTCGCGGGCTAGCGGGCTCCCGCCGGACGCAATCAAAGCCCCCAGT
CACTGCCCACATTGTCAGTCCAGAGAGCTGCGCCCATGGGGCGCCAGTAGTGACTTGCCTCGGTACCGCTGCAAGGCTTGCGGCAAAACCAGTAATGCCC
TGACGGGCACTCCTATGGCGCGATTGCGAAAGCGCCATCTTTGGCAAGACTATGCAGAAGCACTGATCCAGAGCCTGAGCGTACGCAAGGCCGCAATCCA
TTGCGGCGTCAGCAAGAACACGGCTTTCTTGTGGCGGCACAGGTTTCTTTCTCGGATTGCCGGTCACCAAGCCCAGCATGCATCTGGCATTGTCGAAGCG
GATGAAACCTTCTTCCTGGAATCCTTCAAGGGCCAGCGAAAACTGCCCCGGCCACCTCGCAAACGCGGAGGAAGTGCCAAACGACGCGGGTTGTCTGCCG
AACAGATCCCGGTGTTGGTGGTGAGAGATCGCAGTGGTCAACAGGCTGACTTCAAGCTTGAAAAACTCGATGCGGTTCACGTCGGGGAACAGCTACGCCC
CCTGGTTGATGTGGACGCGATTCTTTGTACCGACAGTGCAGGTGTCTATGCCCACTTTGCCAAAGCAGCAGGCATTACTCATCGACCGATAAACCCGAGC
CAGAAGCGCCGGGTTGATGGGGCTTTCCACATCCAGAACGTGAACGCCTACGATAGCCGGCTCAAGAGCTGGATGATTCCTTTTCATGGTGTGGCCACCA
AGTACCTAACGAACTATCTGGGCTGGCGGCGCCTGCTTGAGCGCTACAACGCGCAGATCAACCCATTGATTTGCTTGGGGGAGTCGCTGGGGTATACGGA
CGTGCAACAGTTAACTCAGACATAGCC
AGCACAGCTCTCCACCCTCAACCCAAAGCAGCGCGATCAGTTGAGAACTAGCCTTTCGCGGGCTAGCGGGCTCCCGCCGGACGCAATCAAAGCCCCCAGT
CACTGCCCACATTGTCAGTCCAGAGAGCTGCGCCCATGGGGCGCCAGTAGTGACTTGCCTCGGTACCGCTGCAAGGCTTGCGGCAAAACCAGTAATGCCC
TGACGGGCACTCCTATGGCGCGATTGCGAAAGCGCCATCTTTGGCAAGACTATGCAGAAGCACTGATCCAGAGCCTGAGCGTACGCAAGGCCGCAATCCA
TTGCGGCGTCAGCAAGAACACGGCTTTCTTGTGGCGGCACAGGTTTCTTTCTCGGATTGCCGGTCACCAAGCCCAGCATGCATCTGGCATTGTCGAAGCG
GATGAAACCTTCTTCCTGGAATCCTTCAAGGGCCAGCGAAAACTGCCCCGGCCACCTCGCAAACGCGGAGGAAGTGCCAAACGACGCGGGTTGTCTGCCG
AACAGATCCCGGTGTTGGTGGTGAGAGATCGCAGTGGTCAACAGGCTGACTTCAAGCTTGAAAAACTCGATGCGGTTCACGTCGGGGAACAGCTACGCCC
CCTGGTTGATGTGGACGCGATTCTTTGTACCGACAGTGCAGGTGTCTATGCCCACTTTGCCAAAGCAGCAGGCATTACTCATCGACCGATAAACCCGAGC
CAGAAGCGCCGGGTTGATGGGGCTTTCCACATCCAGAACGTGAACGCCTACGATAGCCGGCTCAAGAGCTGGATGATTCCTTTTCATGGTGTGGCCACCA
AGTACCTAACGAACTATCTGGGCTGGCGGCGCCTGCTTGAGCGCTACAACGCGCAGATCAACCCATTGATTTGCTTGGGGGAGTCGCTGGGGTATACGGA
CGTGCAACAGTTAACTCAGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 72 | 1025 | + | No |
Chemistry : DDE
ORF sequence :
MKAIQFSRWIAQLSTLNPKQRDQLRTSLSRASGLPPDAIKAPSHCPHCQSRELRPWGASSDLPRYRCKACGKTSNALTGTPMARLRKRHLWQDYAEALIQ
SLSVRKAAIHCGVSKNTAFLWRHRFLSRIAGHQAQHASGIVEADETFFLESFKGQRKLPRPPRKRGGSAKRRGLSAEQIPVLVVRDRSGQQADFKLEKLD
AVHVGEQLRPLVDVDAILCTDSAGVYAHFAKAAGITHRPINPSQKRRVDGAFHIQNVNAYDSRLKSWMIPFHGVATKYLTNYLGWRRLLERYNAQINPLI
CLGESLGYTDVQQLTQT
SLSVRKAAIHCGVSKNTAFLWRHRFLSRIAGHQAQHASGIVEADETFFLESFKGQRKLPRPPRKRGGSAKRRGLSAEQIPVLVVRDRSGQQADFKLEKLD
AVHVGEQLRPLVDVDAILCTDSAGVYAHFAKAAGITHRPINPSQKRRVDGAFHIQNVNAYDSRLKSWMIPFHGVATKYLTNYLGWRRLLERYNAQINPLI
CLGESLGYTDVQQLTQT
Blast result :
Comments
ISPsta1 is 93% aa similar to ISAchd1.
References
1] ISfinder annotation (2016)
2] Lee,S.Y., Kim,S.H., Lee,D.G., Shin,S., Yun,S.H., Choi,C.W., Chung,Y.H., Choi,J.S., Kahng,H.Y. and Kim,S.I. (2014) Genome Announc 2 (1).
2] Lee,S.Y., Kim,S.H., Lee,D.G., Shin,S., Yun,S.H., Choi,C.W., Chung,Y.H., Choi,J.S., Kahng,H.Y. and Kim,S.I. (2014) Genome Announc 2 (1).