ISLsp6
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012147 | ND | Leptospirillum sp. | Leptospirillum sp. Group II CF-1 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 20/23
IRL : GGCTATGTTCCCGAGCTTTGTTGTATGAGACAGAAAAGGGTGTAGTCTTT
IRR : GGCTATGTTCCCAAACATTGTTGCACCTCATGCTGACCAACCGCCAAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCGAAGGG | AAGAATTA | AGGGGAGAGC | 8 |
DNA sequence
GGCTATGTTCCCGAGCTTTGTTGTATGAGACAGAAAAGGGTGTAGTCTTTCTATAGGAGGGGGTTCCCATGAAAAAACCCGCATTCCAACGATGTTTGAA
GTCGGTCCCGACCCTGACATCGGCACAAAGAGGAGAAATGAAGATCGCCATTGAACAAGTGGACAACAAAAACCTGGTGGGGGGTGTCGCATCTCTGGTC
GGAACCCCTACCTGTTGCCCCCATTGCCACCATCCCCATATTCGACCATGTGGCCGGGCATCCGGGTTGAAACGTTACCGGTGCAAGGGCTGTCAACGTA
CCTTTAGCCCGCTGACGAACACGGCTTTGGCGGGACTTCACCACAAGGACCGCTGGCTCTTGTATCTGGAGGGGTTCCAGTGGGGAGAGTCGGTCCGAAA
GGCCGCCCGGCGCTGTGGCATCAACCAGAAGGCTTCCTTCAACTGGCGCCATCGCTTTCTGGCACTGCCTTCCGATCTCCAGGCCCGTCAGGAAAGCGGG
ATTGTCGAGGCCGACGAGGCTTGGTTCCTGCGCTCCTACAAGGGGCAACGACACAATCTCCCCAGGGAATCCCGACACCGGGGCGGTCACGCTTCCAAAC
GAGGGCTTTCCAGTGAACAGGTTCCGGTCCTGGTGGTTCGGGACCGCTCTGGAGCCACATCCGATGCGATTCTTCCCAAGGACGACCACCTTGCGATCCA
AGCTGTCCTGAAACCCCTTCTGGCCCAGGATGCGGTTCTTTGCACCGACGGCGGAGGAAAAGGCCCCTTTGCCCTGGCGGCCAGAAAGATGGGCATAGCC
CACCGTGCAGTCAACCTGAGCAAAGGGATCCGGGTGCTGGCTGGCGTTTACCACGTCCAGAATGTAAACGCCTACCATTCGCGCCTGAAAGGATGGCTGC
TGAGATTTCATGGAGTGGCGACCAAATACCTGGGGCATTATCTCGGTTGGAAACGTCTGCTGGAACGATTCGGTGATTATCTCAACTCCGCCCTGTGGTT
GACTTTGGCGGTTGGTCAGCATGAGGTGCAACAATGTTTGGGAACATAGCC
GTCGGTCCCGACCCTGACATCGGCACAAAGAGGAGAAATGAAGATCGCCATTGAACAAGTGGACAACAAAAACCTGGTGGGGGGTGTCGCATCTCTGGTC
GGAACCCCTACCTGTTGCCCCCATTGCCACCATCCCCATATTCGACCATGTGGCCGGGCATCCGGGTTGAAACGTTACCGGTGCAAGGGCTGTCAACGTA
CCTTTAGCCCGCTGACGAACACGGCTTTGGCGGGACTTCACCACAAGGACCGCTGGCTCTTGTATCTGGAGGGGTTCCAGTGGGGAGAGTCGGTCCGAAA
GGCCGCCCGGCGCTGTGGCATCAACCAGAAGGCTTCCTTCAACTGGCGCCATCGCTTTCTGGCACTGCCTTCCGATCTCCAGGCCCGTCAGGAAAGCGGG
ATTGTCGAGGCCGACGAGGCTTGGTTCCTGCGCTCCTACAAGGGGCAACGACACAATCTCCCCAGGGAATCCCGACACCGGGGCGGTCACGCTTCCAAAC
GAGGGCTTTCCAGTGAACAGGTTCCGGTCCTGGTGGTTCGGGACCGCTCTGGAGCCACATCCGATGCGATTCTTCCCAAGGACGACCACCTTGCGATCCA
AGCTGTCCTGAAACCCCTTCTGGCCCAGGATGCGGTTCTTTGCACCGACGGCGGAGGAAAAGGCCCCTTTGCCCTGGCGGCCAGAAAGATGGGCATAGCC
CACCGTGCAGTCAACCTGAGCAAAGGGATCCGGGTGCTGGCTGGCGTTTACCACGTCCAGAATGTAAACGCCTACCATTCGCGCCTGAAAGGATGGCTGC
TGAGATTTCATGGAGTGGCGACCAAATACCTGGGGCATTATCTCGGTTGGAAACGTCTGCTGGAACGATTCGGTGATTATCTCAACTCCGCCCTGTGGTT
GACTTTGGCGGTTGGTCAGCATGAGGTGCAACAATGTTTGGGAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 69 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MKKPAFQRCLKSVPTLTSAQRGEMKIAIEQVDNKNLVGGVASLVGTPTCCPHCHHPHIRPCGRASGLKRYRCKGCQRTFSPLTNTALAGLHHKDRWLLYL
EGFQWGESVRKAARRCGINQKASFNWRHRFLALPSDLQARQESGIVEADEAWFLRSYKGQRHNLPRESRHRGGHASKRGLSSEQVPVLVVRDRSGATSDA
ILPKDDHLAIQAVLKPLLAQDAVLCTDGGGKGPFALAARKMGIAHRAVNLSKGIRVLAGVYHVQNVNAYHSRLKGWLLRFHGVATKYLGHYLGWKRLLER
FGDYLNSALWLTLAVGQHEVQQCLGT
EGFQWGESVRKAARRCGINQKASFNWRHRFLALPSDLQARQESGIVEADEAWFLRSYKGQRHNLPRESRHRGGHASKRGLSSEQVPVLVVRDRSGATSDA
ILPKDDHLAIQAVLKPLLAQDAVLCTDGGGKGPFALAARKMGIAHRAVNLSKGIRVLAGVYHVQNVNAYHSRLKGWLLRFHGVATKYLGHYLGWKRLLER
FGDYLNSALWLTLAVGQHEVQQCLGT
Blast result :
Comments
ISLsp6 is 91% aa similar to ISLsp2.
References
1] ISfinder annotation (2016)
2] Ferrer,A., Bunk,B., Sproeer,C., Valdes,N., Torres,T., Tello,M., Jahn,M., Orellana,O., Jahn,D., Biedendieck,R. and Levican,G. (2013) Direct GenaBnak submission.
2] Ferrer,A., Bunk,B., Sproeer,C., Valdes,N., Torres,T., Tello,M., Jahn,M., Orellana,O., Jahn,D., Biedendieck,R. and Levican,G. (2013) Direct GenaBnak submission.