ISLsp6

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP012147 ND Leptospirillum sp.
Leptospirillum sp. Group II CF-1
DNA section
IS Length : 1051 bp

Ends


IR Length : 20/23

IRL : GGCTATGTTCCCGAGCTTTGTTGTATGAGACAGAAAAGGGTGTAGTCTTT
IRR : GGCTATGTTCCCAAACATTGTTGCACCTCATGCTGACCAACCGCCAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCGAAGGGAAGAATTAAGGGGAGAGC8

DNA sequence

GGCTATGTTCCCGAGCTTTGTTGTATGAGACAGAAAAGGGTGTAGTCTTTCTATAGGAGGGGGTTCCCATGAAAAAACCCGCATTCCAACGATGTTTGAA
GTCGGTCCCGACCCTGACATCGGCACAAAGAGGAGAAATGAAGATCGCCATTGAACAAGTGGACAACAAAAACCTGGTGGGGGGTGTCGCATCTCTGGTC
GGAACCCCTACCTGTTGCCCCCATTGCCACCATCCCCATATTCGACCATGTGGCCGGGCATCCGGGTTGAAACGTTACCGGTGCAAGGGCTGTCAACGTA
CCTTTAGCCCGCTGACGAACACGGCTTTGGCGGGACTTCACCACAAGGACCGCTGGCTCTTGTATCTGGAGGGGTTCCAGTGGGGAGAGTCGGTCCGAAA
GGCCGCCCGGCGCTGTGGCATCAACCAGAAGGCTTCCTTCAACTGGCGCCATCGCTTTCTGGCACTGCCTTCCGATCTCCAGGCCCGTCAGGAAAGCGGG
ATTGTCGAGGCCGACGAGGCTTGGTTCCTGCGCTCCTACAAGGGGCAACGACACAATCTCCCCAGGGAATCCCGACACCGGGGCGGTCACGCTTCCAAAC
GAGGGCTTTCCAGTGAACAGGTTCCGGTCCTGGTGGTTCGGGACCGCTCTGGAGCCACATCCGATGCGATTCTTCCCAAGGACGACCACCTTGCGATCCA
AGCTGTCCTGAAACCCCTTCTGGCCCAGGATGCGGTTCTTTGCACCGACGGCGGAGGAAAAGGCCCCTTTGCCCTGGCGGCCAGAAAGATGGGCATAGCC
CACCGTGCAGTCAACCTGAGCAAAGGGATCCGGGTGCTGGCTGGCGTTTACCACGTCCAGAATGTAAACGCCTACCATTCGCGCCTGAAAGGATGGCTGC
TGAGATTTCATGGAGTGGCGACCAAATACCTGGGGCATTATCTCGGTTGGAAACGTCTGCTGGAACGATTCGGTGATTATCTCAACTCCGCCCTGTGGTT
GACTTTGGCGGTTGGTCAGCATGAGGTGCAACAATGTTTGGGAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa691049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKPAFQRCLKSVPTLTSAQRGEMKIAIEQVDNKNLVGGVASLVGTPTCCPHCHHPHIRPCGRASGLKRYRCKGCQRTFSPLTNTALAGLHHKDRWLLYL
EGFQWGESVRKAARRCGINQKASFNWRHRFLALPSDLQARQESGIVEADEAWFLRSYKGQRHNLPRESRHRGGHASKRGLSSEQVPVLVVRDRSGATSDA
ILPKDDHLAIQAVLKPLLAQDAVLCTDGGGKGPFALAARKMGIAHRAVNLSKGIRVLAGVYHVQNVNAYHSRLKGWLLRFHGVATKYLGHYLGWKRLLER
FGDYLNSALWLTLAVGQHEVQQCLGT

 

Blast result :
Comments
ISLsp6 is 91% aa similar to ISLsp2.
References
1] ISfinder annotation (2016)
2] Ferrer,A., Bunk,B., Sproeer,C., Valdes,N., Torres,T., Tello,M., Jahn,M., Orellana,O., Jahn,D., Biedendieck,R. and Levican,G. (2013) Direct GenaBnak submission.