ISNtsp4
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002876 | ND | Nitrosomonas sp. | Nitrosomonas sp. Is79A3 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 22/25
IRL : GGCTCTGTAGCAATTAATTGTTGAATTGCTAGTCAAATATGCATCGGAAT
IRR : GGCTATGTAGTAATTAACTGTTGAAATTGTCTTGTTTTCCCAAGTGACAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTCAACGGC | CTGTTAAA | CCCCTTTATG | 8 |
DNA sequence
GGCTCTGTAGCAATTAATTGTTGAATTGCTAGTCAAATATGCATCGGAATGTAAAAGAGGGGTTATGCATCATGAAAGCAGCTGAATTCAAAGATTGGAT
AAAATCGATTGAGAGGATGAGCCGCGGTCAGCGAGACAAGCTTCGAGAAAGATTAGAAAGAAAAGCCGGTGCTGATACGATCATAGAATTGATTGAGCAA
GGGCAGAATGAAGAACGAATTTGTCCCTATTGTCAGGGAACAAAGCTGTATCGGTGGGGTAAAGCCAGTGAGTTACAACGCTACCGATGCCGCCACTGCA
ATCACACATTTAATGCCCTGACAGGCACGGCATTGGCCCGATTACGCCACAAAGACAAATGGTTTGATTATGAGCAAGCGATGGTTCAAGGGGTAAGTGT
ACGTAAAGCAGCGGTCAGCTGCGGAGTAACCACGAACACGAGCTTTAAATGGCGTCACCGTTTTTTGCGAACGCCTGCACTCCATCAATCTCCCAAAATG
AATGGCATTGTTGAAGCTGACGAAATGTATTTTCTGGAATCTTTTAAGGGACAACATCATTTACCGAGAGCCGCACGCAAACGAGGCGGCAAAGCTGCCA
AGCGCGGCACATCAAAAGAACAGATACCTGTGCTAGTGGTGCGCGATCGTTATGGTGAAACTGATGACCGTATACTGCATGACACAAGCGCAGAGCAAAT
CGGAACAGTGCTTATCCCTTTGTTAAGCAAAGATGTCATTCTCTGCACAGATGGAATGCCCGCCTACAGACAGATCACCAGGAATGCAAGAATTGTTCAT
CGTCCAGTCAACATTGCTGCAGGTCAACGAGTTATCAACGATGTTTACCACATTCAGAATGTTAATGCTTATGGCAGCCGACTCAGACAATGGATGGCGA
AGTTCCATGGTGTGGCAACACGCTATCTTGCAAGTTATCTGGGGTGGCATAGAATGATTGACCGTCTCGGTCAGAACGTTACACCAACCCTTTGTTTCCT
AATGTCACTTGGGAAAACAAGACAATTTCAACAGTTAATTACTACATAGCC
AAAATCGATTGAGAGGATGAGCCGCGGTCAGCGAGACAAGCTTCGAGAAAGATTAGAAAGAAAAGCCGGTGCTGATACGATCATAGAATTGATTGAGCAA
GGGCAGAATGAAGAACGAATTTGTCCCTATTGTCAGGGAACAAAGCTGTATCGGTGGGGTAAAGCCAGTGAGTTACAACGCTACCGATGCCGCCACTGCA
ATCACACATTTAATGCCCTGACAGGCACGGCATTGGCCCGATTACGCCACAAAGACAAATGGTTTGATTATGAGCAAGCGATGGTTCAAGGGGTAAGTGT
ACGTAAAGCAGCGGTCAGCTGCGGAGTAACCACGAACACGAGCTTTAAATGGCGTCACCGTTTTTTGCGAACGCCTGCACTCCATCAATCTCCCAAAATG
AATGGCATTGTTGAAGCTGACGAAATGTATTTTCTGGAATCTTTTAAGGGACAACATCATTTACCGAGAGCCGCACGCAAACGAGGCGGCAAAGCTGCCA
AGCGCGGCACATCAAAAGAACAGATACCTGTGCTAGTGGTGCGCGATCGTTATGGTGAAACTGATGACCGTATACTGCATGACACAAGCGCAGAGCAAAT
CGGAACAGTGCTTATCCCTTTGTTAAGCAAAGATGTCATTCTCTGCACAGATGGAATGCCCGCCTACAGACAGATCACCAGGAATGCAAGAATTGTTCAT
CGTCCAGTCAACATTGCTGCAGGTCAACGAGTTATCAACGATGTTTACCACATTCAGAATGTTAATGCTTATGGCAGCCGACTCAGACAATGGATGGCGA
AGTTCCATGGTGTGGCAACACGCTATCTTGCAAGTTATCTGGGGTGGCATAGAATGATTGACCGTCTCGGTCAGAACGTTACACCAACCCTTTGTTTCCT
AATGTCACTTGGGAAAACAAGACAATTTCAACAGTTAATTACTACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 72 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MKAAEFKDWIKSIERMSRGQRDKLRERLERKAGADTIIELIEQGQNEERICPYCQGTKLYRWGKASELQRYRCRHCNHTFNALTGTALARLRHKDKWFDY
EQAMVQGVSVRKAAVSCGVTTNTSFKWRHRFLRTPALHQSPKMNGIVEADEMYFLESFKGQHHLPRAARKRGGKAAKRGTSKEQIPVLVVRDRYGETDDR
ILHDTSAEQIGTVLIPLLSKDVILCTDGMPAYRQITRNARIVHRPVNIAAGQRVINDVYHIQNVNAYGSRLRQWMAKFHGVATRYLASYLGWHRMIDRLG
QNVTPTLCFLMSLGKTRQFQQLITT
EQAMVQGVSVRKAAVSCGVTTNTSFKWRHRFLRTPALHQSPKMNGIVEADEMYFLESFKGQHHLPRAARKRGGKAAKRGTSKEQIPVLVVRDRYGETDDR
ILHDTSAEQIGTVLIPLLSKDVILCTDGMPAYRQITRNARIVHRPVNIAAGQRVINDVYHIQNVNAYGSRLRQWMAKFHGVATRYLASYLGWHRMIDRLG
QNVTPTLCFLMSLGKTRQFQQLITT
Blast result :
Comments
ISNtsp4 is 68% aa similar to ISRso22.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bollmann,A., Norton,J., Suwa,Y., Klotz,M., Stein,L., Laanbroek,H., Arp,D. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bollmann,A., Norton,J., Suwa,Y., Klotz,M., Stein,L., Laanbroek,H., Arp,D. and Woyke,T. (2011) Direct GenBank submission.