ISNtsp4

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002876 ND Nitrosomonas sp.
Nitrosomonas sp. Is79A3
DNA section
IS Length : 1051 bp

Ends


IR Length : 22/25

IRL : GGCTCTGTAGCAATTAATTGTTGAATTGCTAGTCAAATATGCATCGGAAT
IRR : GGCTATGTAGTAATTAACTGTTGAAATTGTCTTGTTTTCCCAAGTGACAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTCAACGGCCTGTTAAACCCCTTTATG8

DNA sequence

GGCTCTGTAGCAATTAATTGTTGAATTGCTAGTCAAATATGCATCGGAATGTAAAAGAGGGGTTATGCATCATGAAAGCAGCTGAATTCAAAGATTGGAT
AAAATCGATTGAGAGGATGAGCCGCGGTCAGCGAGACAAGCTTCGAGAAAGATTAGAAAGAAAAGCCGGTGCTGATACGATCATAGAATTGATTGAGCAA
GGGCAGAATGAAGAACGAATTTGTCCCTATTGTCAGGGAACAAAGCTGTATCGGTGGGGTAAAGCCAGTGAGTTACAACGCTACCGATGCCGCCACTGCA
ATCACACATTTAATGCCCTGACAGGCACGGCATTGGCCCGATTACGCCACAAAGACAAATGGTTTGATTATGAGCAAGCGATGGTTCAAGGGGTAAGTGT
ACGTAAAGCAGCGGTCAGCTGCGGAGTAACCACGAACACGAGCTTTAAATGGCGTCACCGTTTTTTGCGAACGCCTGCACTCCATCAATCTCCCAAAATG
AATGGCATTGTTGAAGCTGACGAAATGTATTTTCTGGAATCTTTTAAGGGACAACATCATTTACCGAGAGCCGCACGCAAACGAGGCGGCAAAGCTGCCA
AGCGCGGCACATCAAAAGAACAGATACCTGTGCTAGTGGTGCGCGATCGTTATGGTGAAACTGATGACCGTATACTGCATGACACAAGCGCAGAGCAAAT
CGGAACAGTGCTTATCCCTTTGTTAAGCAAAGATGTCATTCTCTGCACAGATGGAATGCCCGCCTACAGACAGATCACCAGGAATGCAAGAATTGTTCAT
CGTCCAGTCAACATTGCTGCAGGTCAACGAGTTATCAACGATGTTTACCACATTCAGAATGTTAATGCTTATGGCAGCCGACTCAGACAATGGATGGCGA
AGTTCCATGGTGTGGCAACACGCTATCTTGCAAGTTATCTGGGGTGGCATAGAATGATTGACCGTCTCGGTCAGAACGTTACACCAACCCTTTGTTTCCT
AATGTCACTTGGGAAAACAAGACAATTTCAACAGTTAATTACTACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa721049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAAEFKDWIKSIERMSRGQRDKLRERLERKAGADTIIELIEQGQNEERICPYCQGTKLYRWGKASELQRYRCRHCNHTFNALTGTALARLRHKDKWFDY
EQAMVQGVSVRKAAVSCGVTTNTSFKWRHRFLRTPALHQSPKMNGIVEADEMYFLESFKGQHHLPRAARKRGGKAAKRGTSKEQIPVLVVRDRYGETDDR
ILHDTSAEQIGTVLIPLLSKDVILCTDGMPAYRQITRNARIVHRPVNIAAGQRVINDVYHIQNVNAYGSRLRQWMAKFHGVATRYLASYLGWHRMIDRLG
QNVTPTLCFLMSLGKTRQFQQLITT

 

Blast result :
Comments
ISNtsp4 is 68% aa similar to ISRso22.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Bollmann,A., Norton,J., Suwa,Y., Klotz,M., Stein,L., Laanbroek,H., Arp,D. and Woyke,T. (2011) Direct GenBank submission.