ISMetu1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JH109153 ND Methylobacter tundripaludum
Methylobacter tundripaludum SV96
DNA section
IS Length : 1051 bp

Ends


IR Length : 22/25

IRL : GGCTATGTCATCGTTAATTATGGAATTTTTTATTTCTTCTTCATAAAATG
IRR : GGCTATGTCACCGTTAAATATTGAAAATTCCCCAGAGCAGCATTGAGTAG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTATATCATTAATTGTCGCTGGAGTG8

DNA sequence

GGCTATGTCATCGTTAATTATGGAATTTTTTATTTCTTCTTCATAAAATGGTTTTTGTGGATTTTCAATTGGAGATCATCATGAAAAGCGTCGAATTTAT
GCAATTAATTACTGCAGTCCATGAATTAGATCATCATCAGCGCAAATTGTTGAGCGCTGCATTAAACGAACTATCCGACGAATCCAAAGTCCTCGAATTG
ATTGAGGTCTGCTTTGATGCTAGAAGTGCGTGCCCGCATTGTGCCAGTGTCGAGTTATACCGTCACGGATTGGTCAGCGGGTTGCAACGTTATTATTGTA
AAAGCTGCCACAAAACTTTCAATGCCCTCACCGGCACGCCGCTGGCTCGTCTCCGAGAGAAGCCAAAATGGCTGAATTACCTCGCTGCGATGACACAATC
GCTGACCGTACGTCAGTCCGCTTCCGATAGCGGTGTTCATCGCAATACCAGTTTCCGCTGGCGACATCGTTTCTTGAGCTGGATTACCCAAGATCGCCCC
TCAACTCTTCACGGTATTACCGAAGCCGATGAAACGTATTTGTTGGAATCGGACAAAGGCAAGCGGAACCTTGAACGCAAGGCTCGCAAGCGTGGCGGTA
ACGCCACCAAACGAGGAATCTCTGACGAACAGGTCTGTGTGCTGGTTGCTCGTGACCGTTCCGGGCAAACGCTGGATTTCGTTACCGGCAAAGGACCGTT
AACCAAGCCCCTTCTTACCACCTCCCTAAAGCCAGTACTGGATGTGGCTGCCCTTTTGGTTAGCGATGCCAATCCCACCTATATGGCATTCTGTCATGCA
GAAGGCATCAGTCATGAAGTCGTTAACCTCAGTCAAGGCCAGCGGGTCAATGGCGCTTATCATGTGCAAAATGTCAACGCATATCACAGTCGGTTTAAAC
AGTGGCTGGAGCATTTTCACGGTGTGGCGACTAAATACTTACCAAACTACCTGGGCTGGAGACGGTCCTTTGAACAACACCGCCAGCTCGCACCAGAAAC
GCTACTCAATGCTGCTCTGGGGAATTTTCAATATTTAACGGTGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1002 bp333 aa481049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVFVDFQLEIIMKSVEFMQLITAVHELDHHQRKLLSAALNELSDESKVLELIEVCFDARSACPHCASVELYRHGLVSGLQRYYCKSCHKTFNALTGTPLA
RLREKPKWLNYLAAMTQSLTVRQSASDSGVHRNTSFRWRHRFLSWITQDRPSTLHGITEADETYLLESDKGKRNLERKARKRGGNATKRGISDEQVCVLV
ARDRSGQTLDFVTGKGPLTKPLLTTSLKPVLDVAALLVSDANPTYMAFCHAEGISHEVVNLSQGQRVNGAYHVQNVNAYHSRFKQWLEHFHGVATKYLPN
YLGWRRSFEQHRQLAPETLLNAALGNFQYLTVT

 

Blast result :
Comments
ISMetu1 is 68% aa similar to ISPna2.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Klotz,M.G., Dispirito,A.A., Murrell,J.C., Dunfield,P., Kalyuzhnaya,M.G., Svenning,M., Trotsenko,Y.A., Stein,L.Y. and Woyke,T. (2011) Direct GenBank submission.