ISUnCu23

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AMFJ01009550 ND Uncultured bacterium
Uncultured bacterium ACD_23C01012
DNA section
IS Length : 1045 bp

Ends


IR Length : 17/23

IRL : GGCTATGTAATCGCTGCATGTTGGTCTATAAATAAACTATCTGAATCAAT
IRR : GGCTATGTACCCATAGCCTGTTGAACCCCATCGATTCCCAAAGCGGCCCG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNAAATATTTTAAAAAGTCGGCGCTGG0

DNA sequence

GGCTATGTAATCGCTGCATGTTGGTCTATAAATAAACTATCTGAATCAATCGGATAGGTGTTGTGATGAAAGCCAGTGATTTCCGGCAACTGTCGAGCGC
GGTGAAAAATCTGACACCGCATCAACGGCAAGTATTGATGGACCGCCTGCAACCTGTGGCCCAGGCGTCTGCCTCCTGCCATCTGGTCGAAACACGGGTT
GCGGAGAAGCCGATCTGCCCGCACTGCGCCGACAAACAAGTTTCTCGCTGGGGATTCGCCAACGGCTTGCAGCGCTATCGTTGCTGCGCCTGCCGAGCGA
CGTTCAACGCCCTGACCGATACACCGCTGGCAGGACTTCGCCACAAAACGAAATGGATGGACTACGCAAAGCAGTTGGTTGAAGGGACGAGCATACGCAA
AAGCGCTGCCGCCGTTGGCATCCATCCCAATACCGCTTTCCGCTGGCGCCATCGCTTCCTGAAATTGCCCAACGGTCAGCGGGCGATCAGCCTGGCAGGC
ATCGCCGAAGCCGATGAAACCTACTTCCTTGAATCGCAGAAGGGCAGAAAACACGGCTTGACTCGAGCCCCTCGCAAGCGGGGCGGCAAAGCCAGCAAAC
GTGGGTTGTCTGAAGAACAAATCCCGGTGCTGATCTGTCGTGACAGAGCGGGAAACACGGCGGACTTCATGCTGGAGAAGGCCGATAAGGAACACATCGG
GGCAGTGCTCAAGCCACTCTTGGCGACCGATGTCGTTTTGTGCACCGATGGGGCGAAATCCCTGGCGGCGGTCGCCAGAGCAATGGGCATCACCCATCGC
CCGGTCAATCTGGCGGCTGGTCAGCGCATCGTTGCCGGTGTCTATCATGTCCAGAACGTGAATGCCTACGACAGCCGACTCAAGGAATGGATGCGCCGCT
TCCACGGTGTGGCTACCCGCTACTTGGGCAATTACCTCGGTTGGCGACGCCTGATTGAGCGACACAACCGGGAAATTTCCACGGCTGATTTCCTGCGGGC
CGCTTTGGGAATCGATGGGGTTCAACAGGCTATGGGTACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa661043+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKASDFRQLSSAVKNLTPHQRQVLMDRLQPVAQASASCHLVETRVAEKPICPHCADKQVSRWGFANGLQRYRCCACRATFNALTDTPLAGLRHKTKWMDY
AKQLVEGTSIRKSAAAVGIHPNTAFRWRHRFLKLPNGQRAISLAGIAEADETYFLESQKGRKHGLTRAPRKRGGKASKRGLSEEQIPVLICRDRAGNTAD
FMLEKADKEHIGAVLKPLLATDVVLCTDGAKSLAAVARAMGITHRPVNLAAGQRIVAGVYHVQNVNAYDSRLKEWMRRFHGVATRYLGNYLGWRRLIERH
NREISTADFLRAALGIDGVQQAMGT

 

Blast result :
Comments
ISUnCu23 is 69% aa similar to ISRso22.
References
1] ISfinder annotation (2016)
2] Wrighton,K.C., Thomas,B.C., Sharon,I., Miller,C.S., Castelle,C.J., VerBerkmoes,N.C., Wilkins,M.J., Hettich,R.L., Lipton,M.S., Williams,K.H., Long,P.E. and Banfield,J.F. (2012) Science 337 (6102), 1661-1665.