ISUnCu23
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AMFJ01009550 | ND | Uncultured bacterium | Uncultured bacterium ACD_23C01012 |
DNA section
IS Length : 1045 bp
Ends
IR Length : 17/23
IRL : GGCTATGTAATCGCTGCATGTTGGTCTATAAATAAACTATCTGAATCAAT
IRR : GGCTATGTACCCATAGCCTGTTGAACCCCATCGATTCCCAAAGCGGCCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNAAA | TATTTTAAAAAGTCGGCGCTGG | 0 |
DNA sequence
GGCTATGTAATCGCTGCATGTTGGTCTATAAATAAACTATCTGAATCAATCGGATAGGTGTTGTGATGAAAGCCAGTGATTTCCGGCAACTGTCGAGCGC
GGTGAAAAATCTGACACCGCATCAACGGCAAGTATTGATGGACCGCCTGCAACCTGTGGCCCAGGCGTCTGCCTCCTGCCATCTGGTCGAAACACGGGTT
GCGGAGAAGCCGATCTGCCCGCACTGCGCCGACAAACAAGTTTCTCGCTGGGGATTCGCCAACGGCTTGCAGCGCTATCGTTGCTGCGCCTGCCGAGCGA
CGTTCAACGCCCTGACCGATACACCGCTGGCAGGACTTCGCCACAAAACGAAATGGATGGACTACGCAAAGCAGTTGGTTGAAGGGACGAGCATACGCAA
AAGCGCTGCCGCCGTTGGCATCCATCCCAATACCGCTTTCCGCTGGCGCCATCGCTTCCTGAAATTGCCCAACGGTCAGCGGGCGATCAGCCTGGCAGGC
ATCGCCGAAGCCGATGAAACCTACTTCCTTGAATCGCAGAAGGGCAGAAAACACGGCTTGACTCGAGCCCCTCGCAAGCGGGGCGGCAAAGCCAGCAAAC
GTGGGTTGTCTGAAGAACAAATCCCGGTGCTGATCTGTCGTGACAGAGCGGGAAACACGGCGGACTTCATGCTGGAGAAGGCCGATAAGGAACACATCGG
GGCAGTGCTCAAGCCACTCTTGGCGACCGATGTCGTTTTGTGCACCGATGGGGCGAAATCCCTGGCGGCGGTCGCCAGAGCAATGGGCATCACCCATCGC
CCGGTCAATCTGGCGGCTGGTCAGCGCATCGTTGCCGGTGTCTATCATGTCCAGAACGTGAATGCCTACGACAGCCGACTCAAGGAATGGATGCGCCGCT
TCCACGGTGTGGCTACCCGCTACTTGGGCAATTACCTCGGTTGGCGACGCCTGATTGAGCGACACAACCGGGAAATTTCCACGGCTGATTTCCTGCGGGC
CGCTTTGGGAATCGATGGGGTTCAACAGGCTATGGGTACATAGCC
GGTGAAAAATCTGACACCGCATCAACGGCAAGTATTGATGGACCGCCTGCAACCTGTGGCCCAGGCGTCTGCCTCCTGCCATCTGGTCGAAACACGGGTT
GCGGAGAAGCCGATCTGCCCGCACTGCGCCGACAAACAAGTTTCTCGCTGGGGATTCGCCAACGGCTTGCAGCGCTATCGTTGCTGCGCCTGCCGAGCGA
CGTTCAACGCCCTGACCGATACACCGCTGGCAGGACTTCGCCACAAAACGAAATGGATGGACTACGCAAAGCAGTTGGTTGAAGGGACGAGCATACGCAA
AAGCGCTGCCGCCGTTGGCATCCATCCCAATACCGCTTTCCGCTGGCGCCATCGCTTCCTGAAATTGCCCAACGGTCAGCGGGCGATCAGCCTGGCAGGC
ATCGCCGAAGCCGATGAAACCTACTTCCTTGAATCGCAGAAGGGCAGAAAACACGGCTTGACTCGAGCCCCTCGCAAGCGGGGCGGCAAAGCCAGCAAAC
GTGGGTTGTCTGAAGAACAAATCCCGGTGCTGATCTGTCGTGACAGAGCGGGAAACACGGCGGACTTCATGCTGGAGAAGGCCGATAAGGAACACATCGG
GGCAGTGCTCAAGCCACTCTTGGCGACCGATGTCGTTTTGTGCACCGATGGGGCGAAATCCCTGGCGGCGGTCGCCAGAGCAATGGGCATCACCCATCGC
CCGGTCAATCTGGCGGCTGGTCAGCGCATCGTTGCCGGTGTCTATCATGTCCAGAACGTGAATGCCTACGACAGCCGACTCAAGGAATGGATGCGCCGCT
TCCACGGTGTGGCTACCCGCTACTTGGGCAATTACCTCGGTTGGCGACGCCTGATTGAGCGACACAACCGGGAAATTTCCACGGCTGATTTCCTGCGGGC
CGCTTTGGGAATCGATGGGGTTCAACAGGCTATGGGTACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 66 | 1043 | + | No |
Chemistry : DDE
ORF sequence :
MKASDFRQLSSAVKNLTPHQRQVLMDRLQPVAQASASCHLVETRVAEKPICPHCADKQVSRWGFANGLQRYRCCACRATFNALTDTPLAGLRHKTKWMDY
AKQLVEGTSIRKSAAAVGIHPNTAFRWRHRFLKLPNGQRAISLAGIAEADETYFLESQKGRKHGLTRAPRKRGGKASKRGLSEEQIPVLICRDRAGNTAD
FMLEKADKEHIGAVLKPLLATDVVLCTDGAKSLAAVARAMGITHRPVNLAAGQRIVAGVYHVQNVNAYDSRLKEWMRRFHGVATRYLGNYLGWRRLIERH
NREISTADFLRAALGIDGVQQAMGT
AKQLVEGTSIRKSAAAVGIHPNTAFRWRHRFLKLPNGQRAISLAGIAEADETYFLESQKGRKHGLTRAPRKRGGKASKRGLSEEQIPVLICRDRAGNTAD
FMLEKADKEHIGAVLKPLLATDVVLCTDGAKSLAAVARAMGITHRPVNLAAGQRIVAGVYHVQNVNAYDSRLKEWMRRFHGVATRYLGNYLGWRRLIERH
NREISTADFLRAALGIDGVQQAMGT
Blast result :
Comments
ISUnCu23 is 69% aa similar to ISRso22.
References
1] ISfinder annotation (2016)
2] Wrighton,K.C., Thomas,B.C., Sharon,I., Miller,C.S., Castelle,C.J., VerBerkmoes,N.C., Wilkins,M.J., Hettich,R.L., Lipton,M.S., Williams,K.H., Long,P.E. and Banfield,J.F. (2012) Science 337 (6102), 1661-1665.
2] Wrighton,K.C., Thomas,B.C., Sharon,I., Miller,C.S., Castelle,C.J., VerBerkmoes,N.C., Wilkins,M.J., Hettich,R.L., Lipton,M.S., Williams,K.H., Long,P.E. and Banfield,J.F. (2012) Science 337 (6102), 1661-1665.