ISVal3

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KT072771 ND Vibrio alginolyticus
Vibrio alginolyticus HN437
DNA section
IS Length : 1019 bp

Ends


IR Length : 22/23

IRL : GGCTATGTTCCCTTTAACTGTTGTTATACTTAAAGTAGGCAACGATTGGA
IRR : GGCTATGTTCCCTTTAATTGTTGCTGAAGACTTAACATCCTGTTTTCATT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGCCAGCAATATCAAAACCCGTAACG8

DNA sequence

GGCTATGTTCCCTTTAACTGTTGTTATACTTAAAGTAGGCAACGATTGGAGGGAACTCCTATGCTTCAGTCACAGTTCCACAAGCTTATAAAACTGCTAC
CCAAGCTCACCGATAATCAATCTGTACTACTCGAACAATTCTTGAGAGGGGTTGAACCTGTCTCGCAAGTCATTCGTGAACTTGAACAAAGAGTCGTTGA
CTCCCCTGAATGCCCTCACTGCCATAGTTCACTCATAAATCGCCATGGCAAGGTTAATGATATGCAGCGATATCGCTGCAAAAACTGCCTAAAAACATTT
GTCGCTACGACAGGTACGCCTCTTGCTCGATTGCGTTACAAAGAACAATGGGTTAACTACATGAAGTGTATGCTTGATAGTAAAGTGCTGCGTGTCAGTG
CTAAAGAGTGTGGTATCAACCTGAAAACATCATTTCGCTGGCGTCATCGCTTCCTTGAATTCCCTGCAACGCTAAATGCATCAAAGCTTGAGGGGATCAT
TGAAGCAGATGAAACTCTATTTCCGTACTCTGAAAAAGGCTCAAAAAAGCTAACACGTAAACCAAGAAAACGAGGAATGAGAGCGCATAAGCGTGGTCGC
TCTAAGGAGGATTGGGTTCCAGTTTTAACGGTCAGAGACCGAGGTAAGCACACGTTTGAGTCAATCTTGCCTGATGTAAAAGAAGAAACACTAGCCAAAG
AGTTAGCAGGCAAGCTAGAAAAAGATAGTGTGCTCTGTACTGATGGCCATAAGTCTTACATTAGTTTATGCCTTAACAATGACTTAGTGCATAAGCAACT
CAATATATCCGCAGGATTAAAGGTCATTGACCGAGTTTTTCATGTTCAAAATGTGAATGCTTATCACAGTCGCACCAAAGAATGGATGAAGCGATTCCAT
GGAGTAGCAACGAAGTACCTAGATCATTACCTTGGTTGGCACCGTTACATGGAAGTTACTGAAGAACTTAATGAAAACAGGATGTTAAGTCTTCAGCAAC
AATTAAAGGGAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa611017+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLQSQFHKLIKLLPKLTDNQSVLLEQFLRGVEPVSQVIRELEQRVVDSPECPHCHSSLINRHGKVNDMQRYRCKNCLKTFVATTGTPLARLRYKEQWVNY
MKCMLDSKVLRVSAKECGINLKTSFRWRHRFLEFPATLNASKLEGIIEADETLFPYSEKGSKKLTRKPRKRGMRAHKRGRSKEDWVPVLTVRDRGKHTFE
SILPDVKEETLAKELAGKLEKDSVLCTDGHKSYISLCLNNDLVHKQLNISAGLKVIDRVFHVQNVNAYHSRTKEWMKRFHGVATKYLDHYLGWHRYMEVT
EELNENRMLSLQQQLKGT

 

Blast result :
Comments
ISVal3 is 63% aa similar to ISNe7.
ISVal3 is inserted in an integrative conjugative element (ICE) : ICEValHN437.
References
1] ISfinder annotation (2016)
2] Luo,P., He,X., Wang,Y., Liu,Q. and Hu,C. (2016) BMC Microbiol. 16 (1), 79.