ISVal3
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KT072771 | ND | Vibrio alginolyticus | Vibrio alginolyticus HN437 |
DNA section
IS Length : 1019 bp
Ends
IR Length : 22/23
IRL : GGCTATGTTCCCTTTAACTGTTGTTATACTTAAAGTAGGCAACGATTGGA
IRR : GGCTATGTTCCCTTTAATTGTTGCTGAAGACTTAACATCCTGTTTTCATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGCCAGCA | ATATCAAA | ACCCGTAACG | 8 |
DNA sequence
GGCTATGTTCCCTTTAACTGTTGTTATACTTAAAGTAGGCAACGATTGGAGGGAACTCCTATGCTTCAGTCACAGTTCCACAAGCTTATAAAACTGCTAC
CCAAGCTCACCGATAATCAATCTGTACTACTCGAACAATTCTTGAGAGGGGTTGAACCTGTCTCGCAAGTCATTCGTGAACTTGAACAAAGAGTCGTTGA
CTCCCCTGAATGCCCTCACTGCCATAGTTCACTCATAAATCGCCATGGCAAGGTTAATGATATGCAGCGATATCGCTGCAAAAACTGCCTAAAAACATTT
GTCGCTACGACAGGTACGCCTCTTGCTCGATTGCGTTACAAAGAACAATGGGTTAACTACATGAAGTGTATGCTTGATAGTAAAGTGCTGCGTGTCAGTG
CTAAAGAGTGTGGTATCAACCTGAAAACATCATTTCGCTGGCGTCATCGCTTCCTTGAATTCCCTGCAACGCTAAATGCATCAAAGCTTGAGGGGATCAT
TGAAGCAGATGAAACTCTATTTCCGTACTCTGAAAAAGGCTCAAAAAAGCTAACACGTAAACCAAGAAAACGAGGAATGAGAGCGCATAAGCGTGGTCGC
TCTAAGGAGGATTGGGTTCCAGTTTTAACGGTCAGAGACCGAGGTAAGCACACGTTTGAGTCAATCTTGCCTGATGTAAAAGAAGAAACACTAGCCAAAG
AGTTAGCAGGCAAGCTAGAAAAAGATAGTGTGCTCTGTACTGATGGCCATAAGTCTTACATTAGTTTATGCCTTAACAATGACTTAGTGCATAAGCAACT
CAATATATCCGCAGGATTAAAGGTCATTGACCGAGTTTTTCATGTTCAAAATGTGAATGCTTATCACAGTCGCACCAAAGAATGGATGAAGCGATTCCAT
GGAGTAGCAACGAAGTACCTAGATCATTACCTTGGTTGGCACCGTTACATGGAAGTTACTGAAGAACTTAATGAAAACAGGATGTTAAGTCTTCAGCAAC
AATTAAAGGGAACATAGCC
CCAAGCTCACCGATAATCAATCTGTACTACTCGAACAATTCTTGAGAGGGGTTGAACCTGTCTCGCAAGTCATTCGTGAACTTGAACAAAGAGTCGTTGA
CTCCCCTGAATGCCCTCACTGCCATAGTTCACTCATAAATCGCCATGGCAAGGTTAATGATATGCAGCGATATCGCTGCAAAAACTGCCTAAAAACATTT
GTCGCTACGACAGGTACGCCTCTTGCTCGATTGCGTTACAAAGAACAATGGGTTAACTACATGAAGTGTATGCTTGATAGTAAAGTGCTGCGTGTCAGTG
CTAAAGAGTGTGGTATCAACCTGAAAACATCATTTCGCTGGCGTCATCGCTTCCTTGAATTCCCTGCAACGCTAAATGCATCAAAGCTTGAGGGGATCAT
TGAAGCAGATGAAACTCTATTTCCGTACTCTGAAAAAGGCTCAAAAAAGCTAACACGTAAACCAAGAAAACGAGGAATGAGAGCGCATAAGCGTGGTCGC
TCTAAGGAGGATTGGGTTCCAGTTTTAACGGTCAGAGACCGAGGTAAGCACACGTTTGAGTCAATCTTGCCTGATGTAAAAGAAGAAACACTAGCCAAAG
AGTTAGCAGGCAAGCTAGAAAAAGATAGTGTGCTCTGTACTGATGGCCATAAGTCTTACATTAGTTTATGCCTTAACAATGACTTAGTGCATAAGCAACT
CAATATATCCGCAGGATTAAAGGTCATTGACCGAGTTTTTCATGTTCAAAATGTGAATGCTTATCACAGTCGCACCAAAGAATGGATGAAGCGATTCCAT
GGAGTAGCAACGAAGTACCTAGATCATTACCTTGGTTGGCACCGTTACATGGAAGTTACTGAAGAACTTAATGAAAACAGGATGTTAAGTCTTCAGCAAC
AATTAAAGGGAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 61 | 1017 | + | No |
Chemistry : DDE
ORF sequence :
MLQSQFHKLIKLLPKLTDNQSVLLEQFLRGVEPVSQVIRELEQRVVDSPECPHCHSSLINRHGKVNDMQRYRCKNCLKTFVATTGTPLARLRYKEQWVNY
MKCMLDSKVLRVSAKECGINLKTSFRWRHRFLEFPATLNASKLEGIIEADETLFPYSEKGSKKLTRKPRKRGMRAHKRGRSKEDWVPVLTVRDRGKHTFE
SILPDVKEETLAKELAGKLEKDSVLCTDGHKSYISLCLNNDLVHKQLNISAGLKVIDRVFHVQNVNAYHSRTKEWMKRFHGVATKYLDHYLGWHRYMEVT
EELNENRMLSLQQQLKGT
MKCMLDSKVLRVSAKECGINLKTSFRWRHRFLEFPATLNASKLEGIIEADETLFPYSEKGSKKLTRKPRKRGMRAHKRGRSKEDWVPVLTVRDRGKHTFE
SILPDVKEETLAKELAGKLEKDSVLCTDGHKSYISLCLNNDLVHKQLNISAGLKVIDRVFHVQNVNAYHSRTKEWMKRFHGVATKYLDHYLGWHRYMEVT
EELNENRMLSLQQQLKGT
Blast result :
Comments
ISVal3 is 63% aa similar to ISNe7.
ISVal3 is inserted in an integrative conjugative element (ICE) : ICEValHN437.
ISVal3 is inserted in an integrative conjugative element (ICE) : ICEValHN437.
References
1] ISfinder annotation (2016)
2] Luo,P., He,X., Wang,Y., Liu,Q. and Hu,C. (2016) BMC Microbiol. 16 (1), 79.
2] Luo,P., He,X., Wang,Y., Liu,Q. and Hu,C. (2016) BMC Microbiol. 16 (1), 79.