ISMsa1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP007152 ND Marinobacter salarius
Marinobacter salarius R9SW1
DNA section
IS Length : 1047 bp

Ends


IR Length : 25

IRL : GGCTATGTTGGTTTTTGCTGTTGGTACGCTCCAATAATACTGTATATACT
IRR : GGCTATGTTGGTTTTTGCTGTTGGTTTACATTTATCGCAGCACGCAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
CAAATTTTGCTTTAGACAATACTAATGGGTTCG0

DNA sequence

GGCTATGTTGGTTTTTGCTGTTGGTACGCTCCAATAATACTGTATATACTACTGTATAAACAGTTCCTTGGTGGAGCGCATCATGAAGCAGGCCGACATC
AATGCCCTTGAATCTACCTTAGCTCACCTTCCGGTTGATCTGAAAAAACACTTTTCCGATCAGCTCCTTGGGCAAATTAATGCTCAAGCTCACACCCTGA
TAGAAACTGCTAGCTCTCATCGTATTTGCCCTCATTGTGGCAATGACCACCTTGTAAAATGGGGACGCTCTGGTGGCTTGCAGCGGTATCGGTGCCAGAA
CGCATCCTGTCGAAAGACTTTTAATGCAGTCACACGAACCTCGTTGGCCAGATTGCGCTATCGCAATAAATGGTTTGACTACTTGCGGTGTATGCGAGAC
AGCCTGACCCTGCGGGTGTCGGCAGCCCGAGTAGGCATTGATTTAAAGACGGCTTTCCGGTGGCGTCATCGCTTTCTGCATGCCAGTGCAAACGCCAACG
CGAATGCTCTGTCCGGCATTATCGAAGTGGATGAAACCTTCTTTGCGGAGTCCTGCAAAGGCAAGCGCAACATCACGCATCGAAGTTCCAGGAAGCGTGG
CGGGCAAAGTAACAGGAAGTATAAACCTGATAAAATTCCAGTGGTTATTGCGCGAGATCGCAACGGTCATATCAGCGATCTGGTGGATCCCGAACTGAAT
AAATCAACGATCCACGCCTTCCTGGCACCGATCATTAACCGTGACTCGATTTTATGTTCAGACGGTCACAGTTGGTATAAAACCTTTTCTAAGGAACAAG
GCATTGCCCACCATCGGCTTATCACACTCAATAATCAACGAGTGATCGGCAAGGAATACCACATTCAAAACGTCAACAGTTATATCAGTCGATTGAAGGG
CTGGATGGCGCGTTTTCACGGGGTGGGGACGGCCTATCTGCCGAGTTATCTGGCATGGCGACGGTTGTTTGAAAGAGGACAACCCTCTGAAGAAGCTTGG
CTGCGTGCTGCGATAAATGTAAACCAACAGCAAAAACCAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044963 bp320 aa831045045+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQADINALESTLAHLPVDLKKHFSDQLLGQINAQAHTLIETASSHRICPHCGNDHLVKWGRSGGLQRYRCQNASCRKTFNAVTRTSLARLRYRNKWFDY
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLHASANANANALSGIIEVDETFFAESCKGKRNITHRSSRKRGGQSNRKYKPDKIPVVIARDRNGHISDL
VDPELNKSTIHAFLAPIINRDSILCSDGHSWYKTFSKEQGIAHHRLITLNNQRVIGKEYHIQNVNSYISRLKGWMARFHGVGTAYLPSYLAWRRLFERGQ
PSEEAWLRAAINVNQQQKPT

 

Blast result :
Comments
ISMsa1 is 65% aa similar to ISPesp2.
References
1] ISfinder annotation (2016)
2] Ivanova,E.P., Ng,H.J., Webb,H.K., Feng,G., Oshima,K., Hattori,M., Ohkuma,M., Sergeev,A.F., Mikhailov,V.V., Crawford,R.J. and Sawabe,T. (2014) Genome Announc 2 (3), e00442-14.